+	1	1524	1524	Chromosomal replication initiator protein DnaA	peg	gi|57116681|ref|NC_000962.2|_34_1524		chromosomal replication initiator protein DnaA		CDS	chromosomal replication initiator protein DnaA		dnaA	
+	2052	3260	1209	DNA polymerase III beta subunit (EC 2.7.7.7)	peg	gi|57116681|ref|NC_000962.2|_2052_3260		DNA polymerase III, beta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III, beta subunit	2.7.7.7	dnaN	
+	3280	4437	1158	DNA recombination and repair protein RecF	peg	gi|57116681|ref|NC_000962.2|_3280_4437		DNA replication and repair protein RecF		CDS	DNA replication and repair RecF family protein		recF	
+	4482	4997	516	"Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives"	peg	gi|57116681|ref|NC_000962.2|_4497_4997		Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives		CDS	conserved hypothetical protein			
+	5123	7267	2145	DNA gyrase subunit B (EC 5.99.1.3)	peg	gi|57116681|ref|NC_000962.2|_5207_7267		DNA gyrase subunit B (EC 5.99.1.3)	5.99.1.3	CDS	DNA gyrase, B subunit	5.99.1.3	gyrB	
+	7302	9818	2517	DNA gyrase subunit A (EC 5.99.1.3)	peg	gi|57116681|ref|NC_000962.2|_7302_9818		DNA gyrase subunit A (EC 5.99.1.3)	5.99.1.3	CDS	DNA gyrase, A subunit	5.99.1.3	gyrA	
+	9963	10160	198	FIG00822768: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_9963_10160		hypothetical protein		CDS	conserved hypothetical protein			
+	10190	10828	639	FIG187021: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_10484_10828		Transmembrane domain of unknown function (DUF3566).		CDS	conserved hypothetical protein			
-	11123	11341	219							hypothetical protein			
-	11421	11615	195	FIG00822946: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_11615_11421		hypothetical protein		CDS	putative predicted protein			
-	11874	12311	438	FIG024317: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_12311_11874		Protein of unknown function (DUF2562).		CDS	conserved hypothetical protein			
+	12468	13016	549	Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	peg	gi|57116681|ref|NC_000962.2|_12486_13016		Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8	CDS	putative peptidyl-prolyl cis-trans isomerase A			
-	13024	13176	153	FIG00822644: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_13176_13024		hypothetical protein		CDS	conserved hypothetical protein			
-	13133	13492	360	FIG020554: membrane protein	peg	gi|57116681|ref|NC_000962.2|_13447_13133		4-alpha-glucanotransferase		CDS	conserved hypothetical protein			
-	13714	13995	282	FIG018426: putative septation inhibitor protein	peg	gi|57116681|ref|NC_000962.2|_13995_13714		Uncharacterised protein family (UPF0233).		CDS	conserved hypothetical protein			
+	14134	14877	744	FIG215594: Membrane spanning protein	peg	gi|57116681|ref|NC_000962.2|_14134_14877		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	15590	17470	1881	PknB	peg	gi|57116681|ref|NC_000962.2|_17470_15590		Uncharacterized protein conserved in bacteria	2.7.11.1	CDS	serine/threonine-protein kinase pknB	2.7.11.1	pknB	
+	14914	15612	699	"Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb"	peg	gi|57116681|ref|NC_000962.2|_14914_15612		anthranilate synthase, component II (EC 4.1.3.27)	2.6.1.85	CDS	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein			
-	17467	18762	1296	Serine/threonine-protein kinase PknA (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_18762_17467		Serine/threonine protein kinase	2.7.11.1	CDS	putative serine/threonine-protein kinase pknA			
-	18759	20234	1476	Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	peg	gi|57116681|ref|NC_000962.2|_20234_18759		Cell division protein FtsI/penicillin-binding protein 2	2.4.1.129	CDS	penicillin-binding protein A		pbpA	
-	20231	21640	1410	Cell division protein FtsW	peg	gi|57116681|ref|NC_000962.2|_21640_20231		cell elongation-specific peptidoglycan biosynthesis regulator RodA		CDS	cell cycle family protein			
-	21637	23172	1536	Serine/threonine phosphatase PPP (EC 3.1.3.16)	peg	gi|57116681|ref|NC_000962.2|_23172_21637		Serine/threonine protein phosphatase	3.1.3.16	CDS	phosphatase 2C family protein			
-	23270	23737	468	FIG00818182: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_23737_23270		FOG: FHA domain		CDS	FHA domain protein			
-	23861	25444	1584	FIG025441: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_25243_23861		FOG: FHA domain		CDS	FHA domain protein			
+	25238	25543	306	FIG00830002: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_25238_25543					conserved hypothetical protein			
-	25913	26881	969	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_26881_25913		Dioxygenases related to 2-nitropropane dioxygenase	1.13.12.16	CDS	nitronate monooxygenase family protein			
-	27023	27442	420	WhiB family transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_27178_27023		Transcription factor WhiB.		CDS	putative transcriptional regulatory protein (Whib-like), WhiB5			
+	27595	28365	771	Transcriptional regulatory protein	peg	gi|57116681|ref|NC_000962.2|_27595_28365		Predicted transcriptional regulators		CDS	helix-turn-helix family protein			
+	28362	29207	846	"NlpC/P60 family, cell wall-associated hydrolase, invasion-associated protein"	peg	gi|57116681|ref|NC_000962.2|_28362_29207		Cell wall-associated hydrolases (invasion-associated proteins)		CDS	nlpC/P60 family protein			
+	29245	29607	363	FIG00821242: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_29245_29607		Domain of unknown function (DUF4226).		CDS	conserved hypothetical protein			
+	29722	31068	1347	FIG00821131: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_29722_31068		Domain of unknown function (DUF4226).		CDS	conserved hypothetical protein			
+	31189	31506	318	FIG00822329: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_31207_31506		Protein of unknown function (DUF2580).		CDS	conserved hypothetical protein			
+	31514	31819	306	FIG00820005: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_31514_31819		Protein of unknown function (DUF2694).		CDS	conserved hypothetical protein			
+	32057	33154	1098	Vegetative cell wall protein gp1 precursor	peg	gi|57116681|ref|NC_000962.2|_32057_33154		hypothetical protein		CDS	conserved hypothetical protein			
+	33224	33553	330	FIG00820917: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_33224_33553		Protein of unknown function (DUF2710).		CDS	conserved hypothetical protein			
+	34295	36610	2316	"aminotransferase, class II"	peg	gi|57116681|ref|NC_000962.2|_34295_36610		7-keto-8-aminopelargonate synthetase and related enzymes	2.3.1.47	CDS	aminotransferase class-V family protein			
+	36607	36870	264	Acyl carrier protein	peg	gi|57116681|ref|NC_000962.2|_36607_36870		Acyl carrier protein		CDS	phosphopantetheine attachment site family protein			
+	36867	37262	396	FIG00821634: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_36867_37262		Ketosteroid isomerase-related protein		CDS	snoaL-like domain protein			
+	37259	38947	1689	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_37259_38947		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	AMP-binding enzyme family protein			
-	39056	39829	774	FIG00822256: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_39829_39056		TIGR03084 family protein		CDS	conserved hypothetical protein			
-	39877	41187	1311	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_41178_39877		Major Facilitator Superfamily.		CDS	major Facilitator Superfamily protein			
+	41280	41912	633	FIG00996838: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_41304_41912		Putative transcriptional regulator		CDS	conserved hypothetical protein			
-	42004	42351	348	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_42351_42004		hypothetical protein		CDS	putative membrane protein			
-	42433	43365	933	Proline-rich 28 kDa antigen	peg	gi|57116681|ref|NC_000962.2|_43365_42433		Probable lipoprotein LpqN.		CDS	putative lipoLpqN family protein			
+	43562	46471	2910	Leucyl-tRNA synthetase (EC 6.1.1.4)	peg	gi|57116681|ref|NC_000962.2|_43562_46471		leucyl-tRNA synthetase (EC 6.1.1.4)	6.1.1.4	CDS	leucine--tRNA ligase	6.1.1.4	leuS	
-	46581	47207	627	"Transcriptional regulator, MarR family"	peg	gi|57116681|ref|NC_000962.2|_47084_46581		transcriptional regulator, MarR family		CDS	marR family protein			
-	47366	48100	735	"Transcriptional regulator, GntR family"	peg	gi|57116681|ref|NC_000962.2|_48100_47366		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
-	48233	49027	795	Possible oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_49027_48233		probable F420-dependent oxidoreductase, MSMEG_2906 family		CDS	putative F420-dependent oxidoreductase, MSMEG_2906 family protein			
-	49043	49939	897	Hydrolase	peg	gi|57116681|ref|NC_000962.2|_49939_49043		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
-	50021	51124	1104	Inositol-1-phosphate synthase (EC 5.5.1.4)	peg	gi|57116681|ref|NC_000962.2|_51124_50021		inositol 1-phosphate synthase, Actinobacterial type	5.5.1.4	CDS	inositol 1-phosphate synthase	5.5.1.-		
-	51185	51727	543	"Transcriptional regulator, PadR family"	peg	gi|57116681|ref|NC_000962.2|_51727_51185		transcriptional regulator, PadR family		CDS	transcriptional regulator PadR-like family protein			
-	51828	52697	870	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_52697_51828		Domain of unknown function (DUF1707).		CDS	conserved hypothetical protein			
+	52810	53244	435	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_52810_53244		hypothetical protein		CDS	conserved hypothetical protein			
+	53237	55699	2463	Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	peg	gi|57116681|ref|NC_000962.2|_53354_55699		Membrane carboxypeptidase (penicillin-binding protein)		CDS	penicillin binding transpeptidase domain protein			
+	55696	57378	1683	Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	peg	gi|57116681|ref|NC_000962.2|_55696_57378		Predicted integral membrane protein		CDS	conserved hypothetical protein			
+	57335	57973	639	ThiJ/PfpI family protein	peg	gi|57116681|ref|NC_000962.2|_57335_57973		Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain		CDS	DJ-1/PfpI family protein			
+	58192	58482	291	SSU ribosomal protein S6p	peg	gi|57116681|ref|NC_000962.2|_58192_58482		SSU ribosomal protein S6P		CDS	ribosomal protein S6		rpsF	
+	58586	59080	495	Single-stranded DNA-binding protein	peg	gi|57116681|ref|NC_000962.2|_58586_59080		single-strand binding protein		CDS	single-stranded DNA-binding protein		ssb	
+	59122	59376	255	"SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-dependent"	peg	gi|57116681|ref|NC_000962.2|_59122_59376		SSU ribosomal protein S18P		CDS	ribosomal protein S18		rpsR	
+	59397	59867	471	LSU ribosomal protein L9p	peg	gi|57116681|ref|NC_000962.2|_59397_59867		LSU ribosomal protein L9P		CDS	ribosomal protein L9		rplI	
+	59896	60417	522	FIG00822036: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_60250_60417		hypothetical protein		CDS				
+	60396	63020	2625	Replicative DNA helicase (EC 3.6.1.-) @ intein-containing	peg	gi|57116681|ref|NC_000962.2|_60396_63020		replicative DNA helicase	3.6.4.12	CDS	replicative DNA helicase	3.6.4.12	dnaB	
+	63200	63892	693	FIG00821672: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_63200_63892		hypothetical protein		CDS	conserved hypothetical protein			
+	63909	64967	1059	"ADP-ribose 1""-phosphate phophatase related protein"	peg	gi|57116681|ref|NC_000962.2|_63909_64967		Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1		CDS	macro domain protein			
-	65012	65665	654	FIG00822718: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_65188_65012		hypothetical protein		CDS	conserved hypothetical protein			
-	65400	65687	288	FIG00820573: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_65687_65400					conserved hypothetical protein			
+	65771	66694	924	Endoglucanase A precursor (EC 3.2.1.4)	peg	gi|57116681|ref|NC_000962.2|_65771_66694		Cellobiohydrolase A (1,4-beta-cellobiosidase A)	3.2.1.4	CDS	endoglucanase A	3.2.1.4	cenA	
+	66923	68362	1440	Oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_66923_68362		FAD/FMN-containing dehydrogenases		CDS	FAD binding domain protein			
+	68424	68579	156	FIG00823318: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_68424_68579		hypothetical protein		CDS	putative predicted protein			
+	68620	71559	2940	INTEGRAL MEMBRANE PROTEIN (Rhomboid family)	peg	gi|57116681|ref|NC_000962.2|_68620_71559		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	71589	71828	240	FIG00821519: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_71589_71828		hypothetical protein		CDS	putative antitoxin VapB1			
+	71821	72222	402	FIG00821043: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_71821_72222		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
-	72274	74511	2238	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	peg	gi|57116681|ref|NC_000962.2|_74511_72274		isocitrate dehydrogenase, NADP-dependent, monomeric type	1.1.1.42	CDS	isocitrate dehydrogenase, NADP-dependent	1.1.1.42		
-	74629	75198	570	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_75177_74629		transcriptional regulator, TetR family		CDS	transcriptional regulator, TetR family			
+	75301	76212	912	Oxidoreductase/Short-chain dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_75301_76212		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
-	76237	77622	1386	L-serine dehydratase (EC 4.3.1.17)	peg	gi|57116681|ref|NC_000962.2|_77622_76237		L-serine ammonia-lyase (EC 4.3.1.17)	4.3.1.17	CDS	L-serine ammonia-lyase	4.3.1.17		
-	77619	78896	1278	Serine hydroxymethyltransferase (EC 2.1.2.1)	peg	gi|57116681|ref|NC_000962.2|_78896_77619		serine hydroxymethyltransferase (EC 2.1.2.1)	2.1.2.1	CDS	serine hydroxymethyltransferase family protein			
+	79486	80193	708	Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)	peg	gi|57116681|ref|NC_000962.2|_79486_80193		Retron-type reverse transcriptase		CDS	reverse transcriptase family protein			
+	80624	81673	1050	Glutamine-transport transmembrane protein ABC transporter	peg	gi|57116681|ref|NC_000962.2|_80624_81673		ABC-type transport system, involved in lipoprotein release, permease component		CDS	ftsX-like permease family protein			
+	81676	82668	993	Glutamine-transport ATP-binding protein ABC transporter	peg	gi|57116681|ref|NC_000962.2|_81676_82668		ABC-type antimicrobial peptide transport system, ATPase component		CDS	ABC transporter family protein			
+	82748	83983	1236	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_82748_83983		Imidazolonepropionase and related amidohydrolases		CDS	amidohydrolase family protein			
+	83996	85168	1173	"Cystathionine beta-lyase, type II (EC 4.4.1.8)"	peg	gi|57116681|ref|NC_000962.2|_83996_85168		Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	4.4.1.8	CDS	beta C-S lyase	3.-.-.-	aecD	
-	85183	85572	390	PROBABLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_85407_85183		hypothetical protein		CDS	putative membrane protein			
-	85636	86466	831	Oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_86394_85636		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
+	86528	87133	606	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_86528_87133		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	87208	87801	594	FIG00822098: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_87801_87208		Nucleotidyl transferase of unknown function (DUF1814).		CDS	conserved hypothetical protein			
-	87798	88004	207				hypothetical protein		CDS				
+	88204	89025	822	FIG00820894: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_88204_89025		hypothetical protein		CDS	conserved hypothetical protein			
+	89022	89480	459	FIG033054: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_89022_89480		Predicted flavin-nucleotide-binding protein		CDS	pyridoxamine 5'-phosphate oxidase family protein			
+	89575	89919	345	"regulatory protein, ArsR"	peg	gi|57116681|ref|NC_000962.2|_89575_89919		transcriptional regulator, ArsR family		CDS	conserved hypothetical protein			
+	89924	90403	480	Formate hydrogenlyase subunit 7	peg	gi|57116681|ref|NC_000962.2|_89924_90403		Ni,Fe-hydrogenase III small subunit		CDS	NADH ubiquinone oxidoreductase, 20 Kd subunit			
+	90400	92322	1923	Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3	peg	gi|57116681|ref|NC_000962.2|_90400_92322		Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit		CDS	NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			
+	92319	93278	960	Formate hydrogenlyase subunit 4	peg	gi|57116681|ref|NC_000962.2|_92319_93278		Formate hydrogenlyase subunit 4		CDS	NADH dehydrogenase family protein			
+	93289	93951	663	Hydrogenase-4 component E (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_93289_93951		Hydrogenase 4 membrane component (E)	1.-	CDS	putative membrane protein			
+	93951	95417	1467	Hydrogenase-4 component F (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_93951_95417		Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	1.-	CDS	NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			
+	95414	96892	1479	Formate hydrogenlyase subunit 5	peg	gi|57116681|ref|NC_000962.2|_95414_96892		NADH dehydrogenase subunit C (EC 1.6.5.3)		CDS	respiratory-chain NADH dehydrogenase, 30 Kd subunit			
+	97023	97601	579	FIG00821781: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_97023_97601		Oligoketide cyclase/lipid transport protein		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	97758	98351	594	Methyltransferase/methylase	peg	gi|57116681|ref|NC_000962.2|_97758_98351		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
+	98480	99250	771	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_98480_99250		Predicted membrane protein		CDS	conserved hypothetical protein			
+	99379	99573	195				hypothetical protein		CDS				
+	99684	100451	768	5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	peg	gi|57116681|ref|NC_000962.2|_99684_100451		Nucleoside phosphorylase	3.2.2.9	CDS	MTA/SAH nucleosidase	3.2.2.16	mtnN	
-	102815	103525	711				Predicted integral membrane protein		CDS				
+	100583	102868	2286	"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)"	peg	gi|57116681|ref|NC_000962.2|_100718_102868		copper-(or silver)-translocating P-type ATPase	3.6.3.-	CDS	copper-translocating P-type ATPase	3.6.3.4		
-	103710	104669	960	Partial REP13E12 repeat protein	peg	gi|57116681|ref|NC_000962.2|_104663_103710		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
-	104805	105170	366	Partial REP13E12 repeat protein	peg	gi|57116681|ref|NC_000962.2|_105101_104805		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
+	104656	104808	153	FIG00821345: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_104656_104808					conserved hypothetical protein			
+	105324	106715	1392	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_105324_106715		PPE-repeat proteins		CDS	PPE family protein			
+	106734	107603	870	Oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_106734_107603		Probable taurine catabolism dioxygenase		CDS	taurine catabolism dioxygenase TauD, TfdA family protein			
+	107600	108151	552	FIG00822555: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_107633_108151		FcoT-like thioesterase domain.		CDS	conserved hypothetical protein			
+	108180	109778	1599	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_108180_109778		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	AMP-binding enzyme family protein			
+	109771	110019	249	FIG024827: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_109771_110019		Phosphopantetheine attachment site.		CDS	phosphopantetheine attachment site family protein			
+	110001	117539	7539	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_110001_117539		amino acid adenylation domain/thioester reductase domain		CDS	thioester reductase domain protein			
+	117777	119699	1923	"Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein"	peg	gi|57116681|ref|NC_000962.2|_117777_119699		Predicted membrane protein		CDS	cytochrome c oxidase caa3 assembly factor family protein			
-	119915	122173	2259	"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)"	peg	gi|57116681|ref|NC_000962.2|_122158_119915		copper-(or silver)-translocating P-type ATPase	3.6.3.-	CDS	copper-translocating P-type ATPase	3.6.3.4		
+	122317	123831	1515	FIG00823331: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_122344_123831		Cyclic nucleotide-binding domain.		CDS	cyclic nucleotide-binding domain protein			
-	123980	124264	285	LSU ribosomal protein L28p	peg	gi|57116681|ref|NC_000962.2|_124264_123980		LSU ribosomal protein L28P		CDS	ribosomal protein L28		rpmB	
+	124374	125570	1197	"Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family"	peg	gi|57116681|ref|NC_000962.2|_124374_125570		Putative GTPases (G3E family)		CDS	cobW/HypB/UreG, nucleotide-binding domain protein			
-	125643	130541	4899	Probable cation-transporting ATPase I (EC 3.6.3.-)	peg	gi|57116681|ref|NC_000962.2|_130541_125643		ATPase, P-type (transporting), HAD superfamily, subfamily IC	3.6.3.-	CDS	HAD ATPase, P-type, IC family protein	3.6.3.-		
-	130895	131137	243	FIG00821282: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_131137_130895		hypothetical protein		CDS	conserved hypothetical protein			
+	131382	132872	1491	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_131382_132872		PE family.		CDS	PE family protein			
+	133020	133769	750	FIG056164: rhomboid family serine protease	peg	gi|57116681|ref|NC_000962.2|_133131_133769		Uncharacterized membrane protein (homolog of Drosophila rhomboid)		CDS	rhomboid family protein			
+	133950	136007	2058	Transmembrane acyltransferase (EC:2.3.1.-)	peg	gi|57116681|ref|NC_000962.2|_133992_136007		Predicted acyltransferases		CDS	acyltransferase family protein			
+	136289	137245	957	"GDP-mannose 4,6 dehydratase (EC 4.2.1.47)"	peg	gi|57116681|ref|NC_000962.2|_136289_137245		Nucleoside-diphosphate-sugar epimerases	4.2.1.47	CDS	polysaccharide biosynthesis family protein			
+	137286	137909	624	Phosphoheptose isomerase (EC 5.3.1.-)	peg	gi|57116681|ref|NC_000962.2|_137319_137909		phosphoheptose isomerase (EC 5.3.1.-)	5.3.1.28	CDS	phosphoheptose isomerase	5.3.1.28	gmhA	
-	138082	138375	294	FIG00820450: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_138375_138082					hypothetical protein			
+	137941	138513	573				histidinol-phosphate phosphatase family domain/HAD-superfamily hydrolase, subfamily IIIA	3.1.3.82, 3.1.3.83	CDS				
+	138513	139673	1161	"D,D-heptose 7-phosphate kinase"	peg	gi|57116681|ref|NC_000962.2|_138513_139673		Predicted kinase related to galactokinase and mevalonate kinase	2.7.1.168	CDS	D-glycero-D-manno-heptose 1-phosphate kinase			
+	139956	140144	189	FIG00821503: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_139956_140144		hypothetical protein		CDS	hypothetical protein			
-	140267	141022	756	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_141022_140267		Uncharacterized protein conserved in bacteria		CDS	L,D-transpeptidase catalytic domain protein			
-	142128	143876	1749	Oxalyl-CoA decarboxylase (EC 4.1.1.8)	peg	gi|57116681|ref|NC_000962.2|_143846_142128		oxalyl-CoA decarboxylase	4.1.1.8	CDS	oxalyl-CoA decarboxylase	4.1.1.8	oxc	
+	141200	142144	945	Hydrogen peroxide-inducible genes activator	peg	gi|57116681|ref|NC_000962.2|_141200_142144		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	143998	145626	1629	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_143998_145626		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	putative peroxisomal-coenzyme A synthetase			
-	145627	147771	2145	Translation elongation factor G-related protein	peg	gi|57116681|ref|NC_000962.2|_147771_145627		translation elongation factor 2 (EF-2/EF-G)		CDS	small GTP-binding domain protein			
-	147908	148342	435	PPOX class F420-dependent enzyme	peg	gi|57116681|ref|NC_000962.2|_148342_147908		PPOX class probable F420-dependent enzyme, Rv0121 family		CDS	pyridoxamine 5'-phosphate oxidase family protein			
+	148677	148859	183	FIG00823664: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_148677_148859		hypothetical protein		CDS	conserved hypothetical protein			
+	148856	149224	369	"DNA-binding protein, CopG family"	peg	gi|57116681|ref|NC_000962.2|_148856_149224		Ribbon-helix-helix protein, copG family.		CDS	ribbon-helix-helix , copG family protein			
-	149305	149472	168	FIG00824260: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_149472_149305					hypothetical protein			
+	149533	150996	1464	PE-PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_149533_150996		PE family.		CDS	PE family protein			
+	151148	152215	1068	Serine protease PepA	peg	gi|57116681|ref|NC_000962.2|_151148_152215		Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain		CDS	trypsin family protein			
+	152324	154129	1806	Trehalose synthase (EC 5.4.99.16)	peg	gi|57116681|ref|NC_000962.2|_152324_154129		trehalose synthase	3.2.1.1, 5.4.99.16	CDS	trehalose synthase	5.4.99.16	treS	
+	154232	155599	1368	"Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]"	peg	gi|57116681|ref|NC_000962.2|_154232_155599		Uncharacterized protein, probably involved in trehalose biosynthesis		CDS	phosphotransferase enzyme family protein			
+	155667	156446	780	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_155667_156446		Predicted membrane protein		CDS	conserved hypothetical protein			
-	156578	157600	1023	Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C) (EC 2.3.1.-)	peg	gi|57116681|ref|NC_000962.2|_157600_156578		Predicted esterase		CDS	antigen 85-C	2.3.1.-	fbpC	
+	157847	158302	456	Probable enoyl-CoA hydratase 1 (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_157847_158302		Acyl dehydratase		CDS	putative enoyl-CoA hydratase 1			
-	158315	159658	1344	PROBABLE ACYL-CoA DEHYDROGENASE FADE1 (EC 1.3.99.-)	peg	gi|57116681|ref|NC_000962.2|_159652_158315		Acyl-CoA dehydrogenases	1.3.99.3	CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
-	159700	160782	1083	F420-dependent glucose-6-phosphate dehydrogenase Fgd3	peg	gi|57116681|ref|NC_000962.2|_160782_159700		F420-dependent oxidoreductase, G6PDH family		CDS	F420-dependent oxidoreductase, G6PDH family protein	1.-.-.-		
+	160869	161474	606	Histone acetyltransferase HPA2 and related acetyltransferases	peg	gi|57116681|ref|NC_000962.2|_160869_161474		Predicted acetyltransferase		CDS	acetyltransferase family protein			
-	162644	163249	606	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_163249_162644		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	161771	162673	903	epoxide hydrolase	peg	gi|57116681|ref|NC_000962.2|_161771_162673		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
+	163366	164691	1326	Cytochrome P450 138	peg	gi|57116681|ref|NC_000962.2|_163366_164691		Cytochrome P450		CDS	cytochrome P450 family protein			
-	164712	165260	549	Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)	peg	gi|57116681|ref|NC_000962.2|_165260_164712		methionine-S-sulfoxide reductase	1.8.4.11	CDS	peptide-methionine (S)-S-oxide reductase	1.8.4.11	msrA	
+	165323	165826	504	FIG00821695: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_165323_165826		SnoaL-like domain.		CDS	snoaL-like domain protein			
+	165827	166849	1023	Dihydroflavonol-4-reductase (EC 1.1.1.219)	peg	gi|57116681|ref|NC_000962.2|_165827_166849		Nucleoside-diphosphate-sugar epimerases	1.1.1.219	CDS	NAD dependent epimerase/dehydratase family protein			
-	167271	167681	411	FIG00820093: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_167681_167271		Ketosteroid isomerase-related protein		CDS	snoaL-like domain protein			
+	166910	167290	381	FIG00822464: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_166910_167290		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	167711	168637	927	FIG00822261: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_167726_168637		3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase		CDS	conserved hypothetical protein			
-	168704	170182	1479	Chloride channel protein	peg	gi|57116681|ref|NC_000962.2|_170182_168704		Chloride channel protein EriC		CDS	voltage gated chloride channel family protein			
+	170284	171126	843	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_170482_171126		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	171215	172168	954	FIG00823034: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_171215_172168		methyltransferase, putative, TIGR00027 family		CDS	putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			
+	172211	173143	933	FIG00823034: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_172211_173143		methyltransferase, putative, TIGR00027 family		CDS	putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			
+	173238	174758	1521	Aldehyde dehydrogenase (EC 1.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_173238_174758		NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	aldehyde dehydrogenase, dimeric NADP-preferring	1.2.1.5	Aldh3a1	
+	174833	175693	861	Short-chain dehydrogenase/reductase SDR	peg	gi|57116681|ref|NC_000962.2|_174833_175693		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	putative short-chain type dehydrogenase/reductase Rv0148			
-	176665	176988	324	FIG00820781: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_176988_176665		hypothetical protein		CDS	conserved hypothetical protein			
+	175700	176668	969	Quinone oxidoreductase (EC 1.6.5.5)	peg	gi|57116681|ref|NC_000962.2|_175700_176668		NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	zinc-binding dehydrogenase family protein			
-	177543	179309	1767	PE family protein	peg	gi|57116681|ref|NC_000962.2|_179225_177543		PE-PPE domain./PE family.		CDS	PE family protein			
-	179319	180791	1473	PE family protein	peg	gi|57116681|ref|NC_000962.2|_180791_179319		PE-PPE domain.		CDS	PE-PPE domain protein			
-	180805	181029	225	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_181029_180805		PE family.		CDS	PE family protein			
-	181155	181985	831	Protein tyrosine phosphatase (EC 3.1.3.48)	peg	gi|57116681|ref|NC_000962.2|_181985_181155		Protein tyrosine/serine phosphatase	3.1.3.48	CDS	tyrosine phosphatase family protein			
-	181987	183210	1224	Butyryl-CoA dehydrogenase (EC 1.3.99.2)	peg	gi|57116681|ref|NC_000962.2|_183210_181987		Acyl-CoA dehydrogenases	1.3.99.3	CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
+	183622	184722	1101	NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)	peg	gi|57116681|ref|NC_000962.2|_183622_184722		NAD/NADP transhydrogenase alpha subunit	1.6.1.2	CDS	alanine dehydrogenase/pyridine nucleotide transhydrogenase			
+	184723	185055	333	NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)	peg	gi|57116681|ref|NC_000962.2|_184723_185055		NAD/NADP transhydrogenase alpha subunit	1.6.1.2	CDS	conserved hypothetical protein			
+	185052	186479	1428	NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)	peg	gi|57116681|ref|NC_000962.2|_185052_186479		NAD/NADP transhydrogenase beta subunit	1.6.1.2	CDS	NAD(P) transhydrogenase beta subunit			
+	186785	187429	645	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_186785_187429		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	187433	188839	1407	PE family protein	peg	gi|57116681|ref|NC_000962.2|_188839_187433		PE-PPE domain./PE family.		CDS	PE family protein			
-	188931	190439	1509	PE family protein	peg	gi|57116681|ref|NC_000962.2|_190439_188931		PE-PPE domain./PE family.		CDS	PE family protein			
+	190583	191956	1374	putative oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_190583_191956		FAD/FMN-containing dehydrogenases		CDS	FAD linked oxidase, C-terminal domain protein			
-	191984	193135	1152	Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|57116681|ref|NC_000962.2|_193135_191984		Zn-dependent alcohol dehydrogenases, class III	1.1.1.1	CDS	zinc-binding dehydrogenase family protein			
+	193117	193572	456	putative 4-hydroxybenzoyl-CoA thioesterase	peg	gi|57116681|ref|NC_000962.2|_193117_193572		Predicted thioesterase	3.1.2.-	CDS	thioesterase superfamily protein			
+	193671	194111	441	FIG00820956: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_193671_194111		Oligoketide cyclase/lipid transport protein		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
-	194144	194938	795	"Predicted regulator PutR for proline utilization, GntR family"	peg	gi|57116681|ref|NC_000962.2|_194758_194144		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	194993	196657	1665	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_194993_196657		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	AMP-binding enzyme family protein			
+	196861	197658	798	Conserved hypothetical integral membrane protein YrbE1A	peg	gi|57116681|ref|NC_000962.2|_196861_197658		ABC-type transport system involved in resistance to organic solvents, permease component		CDS	permease family protein			
+	197633	198529	897	Conserved hypothetical integral membrane protein YrbE1B	peg	gi|57116681|ref|NC_000962.2|_197633_198529		ABC-type transport system involved in resistance to organic solvents, permease component		CDS	permease family protein			
+	198534	199898	1365	MCE-family protein Mce1A	peg	gi|57116681|ref|NC_000962.2|_198534_199898		virulence factor Mce family protein		CDS	mce related family protein			
+	199895	200935	1041	MCE-family protein Mce1B	peg	gi|57116681|ref|NC_000962.2|_199895_200935		virulence factor Mce family protein		CDS	mce related family protein			
+	200932	202479	1548	MCE-family protein Mce1C	peg	gi|57116681|ref|NC_000962.2|_200932_202479		virulence factor Mce family protein		CDS	mce related family protein			
+	202476	204068	1593	MCE-family protein Mce1D	peg	gi|57116681|ref|NC_000962.2|_202476_204068		virulence factor Mce family protein		CDS	mce related family protein			
+	204065	205237	1173	MCE-family lipoprotein LprK (MCE-family lipoprotein Mce1e)	peg	gi|57116681|ref|NC_000962.2|_204065_205237		virulence factor Mce family protein		CDS	mce related family protein			
+	205231	206778	1548	MCE-family protein Mce1F	peg	gi|57116681|ref|NC_000962.2|_205231_206778		virulence factor Mce family protein		CDS	mce related family protein			
+	206748	207455	708	FIG033430: Probable conserved MCE associated membrane protein	peg	gi|57116681|ref|NC_000962.2|_206814_207455		hypothetical protein		CDS	putative cONSERVED MCE ASSOCIATED MEMBRANE PROTEIN			
+	207452	208420	969	FIG033285: Conserved MCE associated transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_207458_208420		Predicted membrane protein/domain		CDS	RDD family protein			
+	208417	208971	555	FIG034772: Probable conserved MCE associated protein	peg	gi|57116681|ref|NC_000962.2|_208417_208971		hypothetical protein		CDS	conserved hypothetical protein			
+	208938	209672	735	FIG030769: Probable conserved MCE associated membrane protein	peg	gi|57116681|ref|NC_000962.2|_208938_209672		hypothetical protein		CDS	putative predicted protein			
-	209703	210812	1110	Possible lipoprotein LprO	peg	gi|57116681|ref|NC_000962.2|_210812_209703		Predicted periplasmic protein (DUF2233).		CDS	conserved hypothetical protein			
-	210892	212250	1359	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_212250_210892		Predicted membrane protein		CDS	conserved hypothetical protein			
-	212277	213011	735	Pirin-like protein Rv0181c/MT0192	peg	gi|57116681|ref|NC_000962.2|_213011_212277		Pirin-related protein		CDS	pirin family protein			
-	213028	214026	999	RNA polymerase factor sigma-70	peg	gi|57116681|ref|NC_000962.2|_214026_213028		RNA polymerase, sigma subunit, ECF family		CDS	RNA polymerase sigma factor, sigma-70 family protein			
+	214031	214927	897	"lysophospholipase, putative"	peg	gi|57116681|ref|NC_000962.2|_214088_214927		Lysophospholipase		CDS	dienelactone hydrolase family protein			
+	214969	215718	750	FIG00819976: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_214969_215718		Protein of unknown function (DUF2786).		CDS	conserved hypothetical protein			
+	215715	216224	510	FIG00820103: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_215715_216224		hypothetical protein		CDS	conserved hypothetical protein			
+	216269	218344	2076	Beta-glucosidase (EC 3.2.1.21)	peg	gi|57116681|ref|NC_000962.2|_216269_218344		Beta-glucosidase-related glycosidases	3.2.1.21	CDS	glycosyl hydrolase family 3 C-terminal domain protein			
+	218705	219367	663	O-methyltransferase	peg	gi|57116681|ref|NC_000962.2|_218705_219367		Predicted O-methyltransferase		CDS	O-methyltransferase family protein			
+	219486	219917	432	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_219525_219917		SPW repeat.		CDS	SPW repeat family protein			
-	219996	221723	1728	Dihydroxy-acid dehydratase (EC 4.2.1.9)	peg	gi|57116681|ref|NC_000962.2|_221723_219996		dihydroxyacid dehydratase (EC 4.2.1.9)	4.2.1.9	CDS	dihydroxy-acid dehydratase	4.2.1.9	ilvD	
+	221871	222161	291	FIG00820970: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_221871_222161		Uncharacterized protein conserved in bacteria		CDS	metal-sensitive transcriptional repressor family protein			
+	222289	223530	1242	"Integral membrane protein, sugar transporter"	peg	gi|57116681|ref|NC_000962.2|_222289_223530		Arabinose efflux permease		CDS	major Facilitator Superfamily protein			
+	223607	223909	303				hypothetical protein		CDS				
+	223798	224664	867	YkuD domain-containing hypothetical lipoprotein	peg	gi|57116681|ref|NC_000962.2|_223798_224664		peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family		CDS	L,D-transpeptidase catalytic domain protein			
-	224724	226571	1848	FIG00821418: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_226550_224724		hypothetical protein		CDS	conserved hypothetical protein			
+	226878	230462	3585	ATP binding cassette (ABC) transporter homolog	peg	gi|57116681|ref|NC_000962.2|_226878_230462		ABC-type multidrug transport system, ATPase and permease components		CDS	lipid A export permease/ATP-binding protein MsbA		msbA	
+	230767	231534	768	"Transcriptional regulator, LuxR family"	peg	gi|57116681|ref|NC_000962.2|_230836_231534		Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	bacterial regulatory s, luxR family protein			
+	231647	232231	585	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_231647_232231		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	234516	236507	1992	Metallopeptidase	peg	gi|57116681|ref|NC_000962.2|_236507_234516		endothelin-converting enzyme (EC 3.4.24.71). Metallo peptidase. MEROPS family M13	3.4.24.-	CDS	peptidase M13 family protein			
+	232228	234519	2292	"Formate dehydrogenase-O, major subunit (EC 1.2.1.2)"	peg	gi|57116681|ref|NC_000962.2|_232228_234519		Anaerobic dehydrogenases, typically selenocysteine-containing		CDS	molydopterin dinucleotide binding domain protein			
+	236550	237209	660	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_236550_237209		hypothetical protein		CDS	putative conserved membrane protein			
-	237892	238395	504	FIG00821048: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_238395_237892		hypothetical protein		CDS	conserved hypothetical protein			
+	237206	237895	690	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_237206_237895		hypothetical protein		CDS	putative conserved transmembrane protein			
-	238392	241292	2901	Transmembrane transport protein MmpL13	peg	gi|57116681|ref|NC_000962.2|_241292_238392		Predicted drug exporters of the RND superfamily		CDS	MMPL family protein			
+	241514	241924	411	POSSIBLE EXPORTED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_241514_241924		hypothetical protein		CDS	putative exported protein			
-	241976	243259	1284	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_243100_241976		Predicted integral membrane protein		CDS	TIGR00374 family protein			
-	244484	247318	2835	Transmembrane transport protein MmpL5	peg	gi|57116681|ref|NC_000962.2|_247318_244484		Predicted drug exporters of the RND superfamily		CDS	MMPL family protein			
+	243384	244487	1104	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_243384_244487		Predicted permease		CDS	conserved hypothetical protein			
-	247384	248118	735	FIG01001556: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_248118_247384		NYN domain.		CDS	NYN domain protein			
-	248115	248708	594	tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	peg	gi|57116681|ref|NC_000962.2|_248708_248115		tRNA (guanine-N(7)-)-methyltransferase	2.1.1.33	CDS	tRNA (guanine-N(7)-)-methyltransferase	2.1.1.33	trmB	
+	249038	250123	1086	FIG032248: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_249038_250123		hypothetical protein		CDS	conserved hypothetical protein			
+	250120	251598	1479	FIG033897: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_250120_251598		hypothetical protein		CDS	conserved hypothetical protein			
+	251782	253602	1821	Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)	peg	gi|57116681|ref|NC_000962.2|_251782_253602		Phosphoenolpyruvate carboxykinase (GTP)	4.1.1.32	CDS	phosphoenolpyruvate carboxykinase [GTP]	4.1.1.32	pckG	
-	253669	254640	972	"Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22)"	peg	gi|57116681|ref|NC_000962.2|_254640_253669		nicotinamide-nucleotide adenylyltransferase, NadR type		CDS	nicotinamide-nucleotide adenylyltransferase	2.7.7.1		
-	254637	255953	1317	POSSIBLE METHYLTRANSFERASE (METHYLASE)	peg	gi|57116681|ref|NC_000962.2|_255953_254637		Fe-S oxidoreductase		CDS	radical SAM superfamily protein			
+	256160	257677	1518	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_256160_257677		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.3	CDS	AMP-binding enzyme family protein			
-	257783	258856	1074	putative acyl-CoA dehydrogenase fadE3( EC:1.3.99.- )	peg	gi|57116681|ref|NC_000962.2|_258856_257783		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
-	259923	260831	909	Esterase LipW	peg	gi|57116681|ref|NC_000962.2|_260831_259923		Esterase/lipase		CDS	alpha/beta hydrolase fold family protein			
+	258913	259926	1014	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_258913_259926		Acyl dehydratase		CDS	conserved hypothetical protein			
+	260924	262252	1329	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_260924_262252		Sulfite oxidase and related enzymes		CDS	oxidoreductase molybdopterin binding domain protein			
+	262254	262802	549	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_262254_262802		hypothetical protein		CDS	putative conserved transmembrane protein			
+	262812	264023	1212	Esterase LipC	peg	gi|57116681|ref|NC_000962.2|_262812_264023		Esterase/lipase	3.1.1.-	CDS	alpha/beta hydrolase fold family protein			
+	264067	265476	1410	Diacyglycerol O-acyltransferase (EC 2.3.1.20)	peg	gi|57116681|ref|NC_000962.2|_264067_265476		acyltransferase, WS/DGAT/MGAT		CDS	acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		
+	265507	266295	789	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_265507_266295		short chain enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	enoyl-CoA hydratase EchA1		echA1	
-	266301	267764	1464	Aldehyde dehydrogenase (EC 1.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_267764_266301		NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	aldehyde dehydrogenase family protein			
-	267863	268627	765	POSSIBLE METHYLTRANSFERASE (METHYLASE)	peg	gi|57116681|ref|NC_000962.2|_268627_267863		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	ubiE/COQ5 methyltransferase family protein			
+	268663	269817	1155	Glycosyltransferase (EC 2.4.1.-)	peg	gi|57116681|ref|NC_000962.2|_268663_269817		Glycosyltransferase		CDS	glycosyl transferases group 1 family protein			
-	269834	271564	1731	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_271528_269834		hypothetical protein		CDS	putative membrane protein			
-	271574	272854	1281	PROBABLE CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_272839_271574		Protein of unknown function (DUF3068).		CDS	conserved hypothetical protein			
+	272980	274278	1299	Lysophospholipid acyltransferase	peg	gi|57116681|ref|NC_000962.2|_273115_274278		Predicted acyltransferases		CDS	acyltransferase family protein			
-	274306	274719	414	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_274719_274306		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC21			
-	274710	274904	195	FIG00821454: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_274904_274710		hypothetical protein		CDS	toxin domain protein			
-	274983	275963	981	Phosphotriesterase homology protein	peg	gi|57116681|ref|NC_000962.2|_275963_274983		Predicted metal-dependent hydrolase with the TIM-barrel fold		CDS	aryldialkylphosphatase	3.1.8.1	php	
+	276058	277764	1707	Acyl-CoA dehydrogenase (EC 1.3.99.3)	peg	gi|57116681|ref|NC_000962.2|_276058_277764		Acyl-CoA dehydrogenases	1.3.99.3	CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	277899	278588	690	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_277899_278588		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	278585	279529	945	Ribonucleotide-diphosphate reductase subunit beta (EC 1.17.4.1)	peg	gi|57116681|ref|NC_000962.2|_278585_279529		Ribonucleotide reductase, beta subunit	1.17.4.1	CDS	R2-like ligand binding oxidase	1.-.-.-		
-	279605	280978	1374	Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	peg	gi|57116681|ref|NC_000962.2|_280978_279605		NAD-dependent aldehyde dehydrogenases	1.2.1.16	CDS	aldehyde dehydrogenase family protein			
-	281166	282614	1449	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_282614_281166		Lipase maturation factor.		CDS	lipase maturation factor 1		Lmf1	
-	282649	286851	4203	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_286851_282649		Domain of unknown function (DUF3367)./F5/8 type C domain.		CDS	F5/8 type C domain protein			
-	286898	287071	174	SMALL SECRETED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_287071_286898		Protein of unknown function (DUF2613).		CDS	conserved hypothetical protein			
+	287186	288352	1167	Beta-hexosaminidase (EC 3.2.1.52)	peg	gi|57116681|ref|NC_000962.2|_287186_288352		Beta-glucosidase-related glycosidases	3.2.1.21	CDS	glycosyl hydrolase family 3 N terminal domain protein			
+	288476	289042	567	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_288476_289042		transcriptional regulator, TetR family		CDS	putative transcriptional regulator			
+	289104	289337	234	FIG00821638: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_289104_289337		hypothetical protein		CDS	putative antitoxin VapB24			
+	289345	289782	438	FIG00823838: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_289345_289782		Predicted nucleic acid-binding protein, contains PIN domain		CDS	mycobacterium tuberculosis PIN domain protein			
-	289812	290654	843	Acyl dehydratase	peg	gi|57116681|ref|NC_000962.2|_290654_289812		Acyl dehydratase		CDS	maoC like domain protein			
-	290665	292029	1365	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|57116681|ref|NC_000962.2|_292029_290665		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.100	CDS	short chain dehydrogenase family protein			
+	292171	293493	1323	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	peg	gi|57116681|ref|NC_000962.2|_292171_293493		3-ketoacyl-CoA thiolase (EC 2.3.1.16)	2.3.1.9	CDS	acetyl-CoA C-acetyltransferase family protein			
-	293798	295633	1836	PROBABLE ACYL-COA DEHYDROGENASE FADE5( EC:1.3.99.- )	peg	gi|57116681|ref|NC_000962.2|_295633_293798		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	296005	296493	489	Nitrilotriacetate monooxygenase component B (EC 1.14.13.-)	peg	gi|57116681|ref|NC_000962.2|_296005_296493		Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	flavin reductase like domain protein			
-	298116	298862	747	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	peg	gi|57116681|ref|NC_000962.2|_298844_298116		succinate dehydrogenase subunit B (EC 1.3.5.1)	1.3.99.1	CDS	succinate dehydrogenase and fumarate reductase iron-sulfur family protein			
+	296809	298119	1311	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_296809_298119		hypothetical protein		CDS	putative membrane protein			
-	298863	300803	1941	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	peg	gi|57116681|ref|NC_000962.2|_300803_298863		succinate dehydrogenase subunit A (EC 1.3.5.1)	1.3.99.1	CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
-	300834	301655	822	putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)	peg	gi|57116681|ref|NC_000962.2|_301655_300834		hypothetical protein		CDS	putative membrane protein			
-	301735	302028	294	FIG00820825: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_302028_301735		hypothetical protein		CDS	conserved hypothetical protein			
-	302173	302652	480	Heat shock protein hsp	peg	gi|57116681|ref|NC_000962.2|_302652_302173		Molecular chaperone (small heat shock protein)		CDS	hsp20/alpha crystallin family protein			
+	302917	305427	2511	Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)	peg	gi|57116681|ref|NC_000962.2|_302917_305427		assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4)	1.7.1.4	CDS	nitrite reductase [NAD(P)H], large subunit	1.7.1.4	nirB	
+	305453	305809	357	Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)	peg	gi|57116681|ref|NC_000962.2|_305453_305809		nitrite reductase [NAD(P)H], small subunit	1.7.1.4	CDS	nitrite reductase [NAD(P)H], small subunit	1.7.1.4	nirD	
-	305825	306349	525	Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	peg	gi|57116681|ref|NC_000962.2|_306349_305825		adenosylcobinamide kinase (EC 2.7.1.156)/adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	2.7.1.156, 2.7.7.62	CDS	cobinamide kinase / cobinamide phosphate guanyltransferase family protein			
-	306374	307858	1485	Cobyric acid synthase	peg	gi|57116681|ref|NC_000962.2|_307858_306374		adenosylcobyric acid synthase (glutamine-hydrolysing) (EC 6.3.5.10)	6.3.5.10	CDS	cobyric acid synthase CobQ	6.3.5.10	cobQ	
-	307877	309547	1671	Predicted cobalt transporter in Mycobacteria	peg	gi|57116681|ref|NC_000962.2|_309547_307877		PPE-repeat proteins		CDS	PPE family protein			
-	310294	310749	456	FIG00825710: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_310749_310294		transcriptional regulator, TetR family		CDS	conserved hypothetical protein			
-	310774	311517	744	Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	peg	gi|57116681|ref|NC_000962.2|_311517_310774		Uncharacterized conserved protein		CDS	cbiX family protein			
-	311514	312659	1146	Bifunctional uroporphyrinogen-III synthetase/response regulator domain protein	peg	gi|57116681|ref|NC_000962.2|_312659_311514		Uroporphyrinogen-III synthase	4.2.1.75	CDS	uroporphyrinogen-III synthase HemD family protein			
-	312759	314168	1410	Nitrate/nitrite transporter	peg	gi|57116681|ref|NC_000962.2|_314168_312759		Nitrate/nitrite transporter		CDS	major Facilitator Superfamily protein			
-	314309	314854	546	Aminoglycoside 2'-N-acetyltransferase AAC (AAC(2')-IC)	peg	gi|57116681|ref|NC_000962.2|_314854_314309		Predicted acetyltransferase		CDS	aminoglycoside 2'-N-acetyltransferase	2.3.1.-	aac	
-	314864	315766	903	Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	peg	gi|57116681|ref|NC_000962.2|_315766_314864		biotin-dependent carboxylase uncharacterized domain		CDS	allophanate hydrolase subunit 2			
-	315783	316436	654	Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	peg	gi|57116681|ref|NC_000962.2|_316415_315783		Allophanate hydrolase subunit 1		CDS	allophanate hydrolase subunit 1			
-	316511	317503	993	"ABC transporter, periplasmic iron-transport lipoprotein"	peg	gi|57116681|ref|NC_000962.2|_317473_316511		ABC-type Fe3+-hydroxamate transport system, periplasmic component		CDS	periplasmic binding family protein			
-	317525	321154	3630	"Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), contradiction in experimental data (see Annotation)"	peg	gi|57116681|ref|NC_000962.2|_321154_317525		5-oxoprolinase (ATP-hydrolysing) (EC 3.5.2.9)	3.5.2.9	CDS	hydantoinase B/oxoprolinase family protein			
+	321331	322722	1392	Nitrate/nitrite transporter	peg	gi|57116681|ref|NC_000962.2|_321331_322722		nitrite extrusion protein (nitrite facilitator)		CDS	nitrite extrusion protein 1		narK	
-	322764	323021	258	FIG00820728: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_322967_322764		prevent-host-death family protein		CDS	prevent-host-death family protein			
-	323338	324531	1194	ATP-dependent DNA ligase (EC 6.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_324531_323338		Predicted eukaryotic-type DNA primase		CDS	eukaryotic and archaeal DNA primase small subunit			
+	324567	326249	1683	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_324567_326249		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	AMP-binding enzyme family protein			
-	326266	328461	2196	FadE6	peg	gi|57116681|ref|NC_000962.2|_328461_326266		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
-	328575	329708	1134	FIG00820646: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_329708_328575		Alpha/beta hydrolase family.		CDS	alpha/beta hydrolase family protein			
-	329705	330325	621	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_330325_329705		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	330933	331667	735	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_331658_330933		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	330422	331003	582				Lactoylglutathione lyase and related lyases		CDS				
+	331748	332668	921	FIG00820338: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_331748_332668		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	332708	333136	429	FIG00820219: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_333136_332708		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC25			
-	333160	333333	174	FIG00820304: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_333333_333160					antitoxin VapB25		vapB25	
-	333437	336310	2874	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_336310_333437		hypothetical protein		CDS	PE family protein			
-	336560	339073	2514	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_339073_336560		PE family.		CDS	PE family protein			
+	339107	339367	261				hypothetical protein		CDS				
+	339247	340974	1728	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_339247_340974		PPE-repeat proteins		CDS	PPE family protein			
+	340998	341906	909	O-Methyltransferase	peg	gi|57116681|ref|NC_000962.2|_340998_341906		methyltransferase, putative, TIGR00027 family		CDS	putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			
+	342130	344025	1896	"AAA family ATPase, ESX-1 secretion system component Rv3868"	peg	gi|57116681|ref|NC_000962.2|_342163_344025		type VII secretion AAA-ATPase EccA		CDS	type VII secretion AAA-ATPase EccA		eccA	
+	344022	345638	1617	Type VII secretion protein EccB	peg	gi|57116681|ref|NC_000962.2|_344022_345638		type VII secretion protein EccB, Actinobacterial		CDS	type VII secretion protein EccB		eccB	
+	345635	349627	3993	Type VII secretion protein EccCa	peg	gi|57116681|ref|NC_000962.2|_345635_349627		type VII secretion protein EccCa/type VII secretion protein EccCb		CDS	type VII secretion protein EccCb		eccCb	
+	349624	349932	309	PE family protein	peg	gi|57116681|ref|NC_000962.2|_349624_349932		PE family.		CDS	PE family protein			
+	349935	351476	1542	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_349935_351476		PPE-repeat proteins		CDS	PPE family protein			
+	351525	351818	294	PE family protein	peg	gi|57116681|ref|NC_000962.2|_351525_351818		Proteins of 100 residues with WXG.		CDS	pe family protein			
+	351848	352138	291	10 kDa antigen CFP7	peg	gi|57116681|ref|NC_000962.2|_351848_352138		WXG100 family type VII secretion target		CDS	ESAT-6-like protein esxH		esxH	
+	352149	353036	888	RD1 region associated protein Rv3866	peg	gi|57116681|ref|NC_000962.2|_352149_353036		EspG family.		CDS	espG family protein			
+	353083	354501	1419	ESX-3 secretion system protein EccD3	peg	gi|57116681|ref|NC_000962.2|_353083_354501		type VII secretion integral membrane protein EccD		CDS	type VII secretion integral membrane protein EccD		eccD	
+	354483	355883	1401	Type VII secretion-associated serine protease mycosin MycP3	peg	gi|57116681|ref|NC_000962.2|_354483_355883		type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	
-	356862	358073	1212	FIG00821889: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_358064_356862		Esterase/lipase		CDS	alpha/beta hydrolase family protein			
+	355880	356875	996	ESX-3 secretion system protein EccE3	peg	gi|57116681|ref|NC_000962.2|_355880_356875		type VII secretion protein EccE		CDS	type VII secretion protein EccE		eccE	
-	358945	359748	804	Sulfotransferase	peg	gi|57116681|ref|NC_000962.2|_359736_358945		Uncharacterized protein conserved in bacteria		CDS	sulfotransferase			
+	358171	358956	786	Trans-aconitate 2-methyltransferase (EC 2.1.1.144)	peg	gi|57116681|ref|NC_000962.2|_358171_358956		Trans-aconitate methyltransferase	2.1.1.144	CDS	methyltransferase domain protein			
-	359758	361155	1398	Choline-sulfatase (EC 3.1.6.6)	peg	gi|57116681|ref|NC_000962.2|_361155_359758		Arylsulfatase A and related enzymes		CDS	type I phosphodiesterase / nucleotide pyrophosphatase family protein			
+	361334	363109	1776	PE-PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_361334_363109		PE family.		CDS	PE family protein			
+	363252	363479	228	Programmed cell death antitoxin YdcD	peg	gi|57116681|ref|NC_000962.2|_363252_363479		Ribbon-helix-helix protein, copG family.		CDS	antitoxin Rv0298/MT0312			
+	363476	363778	303	Programmed cell death toxin YdcE	peg	gi|57116681|ref|NC_000962.2|_363476_363778		hypothetical protein		CDS	toxin Rv0299			
+	363826	364047	222	FIG00821978: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_363826_364047		Ribbon-helix-helix protein, copG family.		CDS				
+	364038	364469	432	FIG036853: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_364038_364469		Predicted nucleic acid-binding protein, contains PIN domain		CDS	ribonuclease VapC2	3.1.-.-	vapC2	
+	364605	365237	633	TetR/ACRR family transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_364605_365237		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	365234	366142	909	"""Oxidoreductase, short-chain dehydrogenase/reductase family"""	peg	gi|57116681|ref|NC_000962.2|_365234_366142		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
-	366150	372764	6615	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_372764_366150		Pentapeptide repeats (8 copies).		CDS	pentapeptide repeats family protein			
-	372820	375711	2892	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_375711_372820		PPE-repeat proteins		CDS	PPE family protein			
-	376573	377055	483	FIG00820335: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_377055_376573		hypothetical protein		CDS	putative conserved protein			
+	375914	376585	672	"Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family"	peg	gi|57116681|ref|NC_000962.2|_375941_376585		cob(II)yrinic acid a,c-diamide reductase (EC 1.16.8.1)/5,6-dimethylbenzimidazole synthase (EC 1.14.99.40)	1.14.99.40	CDS	5,6-dimethylbenzimidazole synthase	1.14.99.40	bluB	
+	377113	377829	717	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_377113_377829		Membrane-associated phospholipid phosphatase		CDS	PAP2 superfamily protein			
+	377931	378587	657	FIG019540: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_378000_378587		Uncharacterized protein conserved in bacteria		CDS	L,D-transpeptidase catalytic domain protein			
-	378657	379148	492	Bile acid 7-alpha dehydratase BaiE (EC 4.2.1.106)	peg	gi|57116681|ref|NC_000962.2|_379133_378657		SnoaL-like domain.		CDS	snoaL-like domain protein			
+	379172	380401	1230	FIG00823053: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_379172_380401		hypothetical protein		CDS	conserved hypothetical protein			
+	380556	382418	1863	Proline and threonine rich protein	peg	gi|57116681|ref|NC_000962.2|_380556_382418		Molecular chaperone		CDS	hsp70 family protein			
+	382490	382876	387	FIG00822480: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_382490_382876		hypothetical protein		CDS	conserved hypothetical protein			
-	382879	383541	663	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_383541_382879		Protein of unknown function (DUF3060).		CDS	conserved hypothetical protein			
+	383632	384486	855	"""Possible beta-1,3-glucanase"""	peg	gi|57116681|ref|NC_000962.2|_383632_384486		Beta-glucanase/Beta-glucan synthetase		CDS	glycosyl hydrolases family protein 16			
+	384535	385149	615	Muconolactone isomerase (EC 5.3.3.4)	peg	gi|57116681|ref|NC_000962.2|_384535_385149		Muconolactone delta-isomerase		CDS	muconolactone delta-isomerase family protein			
-	385173	385910	738	Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	peg	gi|57116681|ref|NC_000962.2|_385874_385173		Glycerophosphoryl diester phosphodiesterase	3.1.4.46	CDS	glycerophosphoryl diester phosphodiesterase family protein			
-	386305	387099	795	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_387081_386305		Predicted divalent heavy-metal cations transporter		CDS	ZIP Zinc transporter family protein			
+	387148	387816	669	Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	peg	gi|57116681|ref|NC_000962.2|_387148_387816		pyroglutamyl-peptidase I (EC:3.4.19.3). Cysteine peptidase. MEROPS family C15	3.4.19.3	CDS	pyroglutamyl-peptidase I	3.4.19.3	pcp	
+	387888	388550	663	Possible conserved exported protein	peg	gi|57116681|ref|NC_000962.2|_387963_388550		hypothetical protein		CDS	conserved hypothetical protein			
+	388582	389154	573	Deoxycytidine triphosphate deaminase (EC 3.5.4.30) (dUMP-forming)	peg	gi|57116681|ref|NC_000962.2|_388582_389154		dCTP deaminase (EC 3.5.4.13)	3.5.4.13	CDS	deoxycytidine triphosphate deaminase	3.5.4.13	dcd	
-	390580	391251	672	FIG030768: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_391206_390580		Uncharacterized proteins, LmbE homologs		CDS	glcNAc-PI de-N-acetylase family protein			
+	389260	390591	1332	UDP-glucose dehydrogenase (EC 1.1.1.22)	peg	gi|57116681|ref|NC_000962.2|_389260_390591		nucleotide sugar dehydrogenase	1.1.1.22	CDS	nucleotide sugar dehydrogenase family protein			
+	391352	392032	681	"Transcriptional regulator, ArsR family"	peg	gi|57116681|ref|NC_000962.2|_391352_392032		transcriptional regulator, ArsR family		CDS	bacterial regulatory , arsR family protein			
+	392039	392263	225	Methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_392066_392263		hypothetical protein		CDS	conserved hypothetical protein			
-	392696	394045	1350	Cytochrome P450 135A1	peg	gi|57116681|ref|NC_000962.2|_394045_392696		Cytochrome P450		CDS	cytochrome P450 family protein			
+	392273	392728	456	Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	peg	gi|57116681|ref|NC_000962.2|_392273_392728		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
-	394694	395320	627	FIG034077: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_395320_394694		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	ubiE/COQ5 methyltransferase family protein			
+	394111	394713	603	HTH-type transcriptional regulator BetI	peg	gi|57116681|ref|NC_000962.2|_394111_394713		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	395347	396087	741	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_396087_395347		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	396201	397367	1167	Oxidoreductase (flavoprotein)	peg	gi|57116681|ref|NC_000962.2|_396201_397367		Uncharacterized NAD(FAD)-dependent dehydrogenases		CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	397442	398227	786	FIG00820643: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_397472_398227		uncharacterized Actinobacterial protein TIGR03083		CDS	conserved hypothetical protein			
+	398194	398628	435	FIG00820524: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_398254_398628		SnoaL-like domain.		CDS	snoaL-like domain protein			
+	398658	399524	867	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	peg	gi|57116681|ref|NC_000962.2|_398658_399524		Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	2.7.7.24	CDS	glucose-1-phosphate thymidylyltransferase	2.7.7.24	rfbA	
-	399535	399837	303	PE family protein	peg	gi|57116681|ref|NC_000962.2|_399837_399535					PE family protein			
+	399487	400098	612				hypothetical protein		CDS				
+	400168	401703	1536	13E12 repeat family protein	peg	gi|57116681|ref|NC_000962.2|_400168_401703		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
-	401873	403162	1290	aspartate aminotransferase AspC	peg	gi|57116681|ref|NC_000962.2|_403162_401873		L-aspartate aminotransferase apoenzyme (EC 2.6.1.1)	2.6.1.2, 2.6.1.66	CDS	aminotransferase class-V family protein			
-	403193	405841	2649	Iron-sulphur-binding reductase	peg	gi|57116681|ref|NC_000962.2|_405841_403193		Fe-S oxidoreductase		CDS	4Fe-4S dicluster domain protein			
-	405950	408400	2451	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_408400_405950		Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	bacterial regulatory s, luxR family protein			
+	408634	409173	540	FIG00820657: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_408634_409173		hypothetical protein		CDS	conserved hypothetical protein			
+	409356	410801	1446	Isoniazid inductible protein IniB	peg	gi|57116681|ref|NC_000962.2|_409356_410801		hypothetical protein		CDS	putative isoniazid-inductible protein iniB			
+	410838	412760	1923	Isoniazid inductible protein IniA	peg	gi|57116681|ref|NC_000962.2|_410907_412760		Predicted GTPases (dynamin-related)		CDS	isoniazid-inductible protein iniA		iniA	
+	412757	414238	1482	Isoniazid inductible protein IniC	peg	gi|57116681|ref|NC_000962.2|_412757_414238		Dynamin family.		CDS	50S ribosome-binding GTPase family protein			
-	414381	414941	561	Lipoprotein LpqJ	peg	gi|57116681|ref|NC_000962.2|_414665_414381		hypothetical protein		CDS	putative lpqJ protein			
+	414718	414963	246	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_414718_414963					hypothetical protein			
+	415044	415460	417	CTP:molybdopterin cytidylyltransferase	peg	gi|57116681|ref|NC_000962.2|_415044_415460		MobA-like NTP transferase domain.		CDS	mobA-like NTP transferase domain protein			
-	415502	416965	1464	L-asparagine permease	peg	gi|57116681|ref|NC_000962.2|_416965_415502		asparagine:proton symporter, AAT family (TC 2.A.3.1.8)		CDS	amino acid permease family protein			
-	417284	417454	171	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_417454_417284					hypothetical protein			
+	417478	418290	813	FIG047027: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_417478_418290		hypothetical protein		CDS	TIGR04255 family protein			
-	418901	419119	219	FIG00821445: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_419119_418901		hypothetical protein		CDS	hypothetical protein			
+	418293	418946	654	FIG046367: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_418293_418946		hypothetical protein		CDS	putative transcriptional regulator			
+	419192	419608	417	FIG00820329: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_419192_419608		hypothetical protein		CDS	conserved hypothetical protein			
+	419835	421712	1878	Chaperone protein DnaK	peg	gi|57116681|ref|NC_000962.2|_419835_421712		chaperone protein DnaK		CDS	chaperone protein DnaK		dnaK	
+	421709	422416	708	Heat shock protein GrpE	peg	gi|57116681|ref|NC_000962.2|_421709_422416		Molecular chaperone GrpE (heat shock protein)		CDS	grpE family protein			
+	422452	423639	1188	Chaperone protein DnaJ	peg	gi|57116681|ref|NC_000962.2|_422452_423639		chaperone protein DnaJ		CDS	chaperone protein DnaJ		dnaJ	
+	423639	424019	381	"HspR, transcriptional repressor of DnaK operon"	peg	gi|57116681|ref|NC_000962.2|_423639_424019		Predicted transcriptional regulators		CDS	merR regulatory family protein			
-	424269	424694	426	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_424682_424269		hypothetical protein		CDS	pPE FAMILY PROTEIN		PPE7	
-	424777	434679	9903	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_434679_424777		PPE-repeat proteins		CDS	PPE family protein			
-	434830	435474	645	FIG00822066: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_435459_434830		Uncharacterized protein, possibly involved in aromatic compounds catabolism		CDS	thioesterase superfamily protein			
-	435471	436769	1299	Adenylosuccinate synthetase (EC 6.3.4.4)	peg	gi|57116681|ref|NC_000962.2|_436769_435471		Adenylosuccinate synthetase (EC 6.3.4.4)	6.3.4.4	CDS	adenylosuccinate synthase	6.3.4.4	purA	
+	436860	437507	648	FIG00820475: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_436860_437507		hypothetical protein		CDS	conserved hypothetical protein			
+	437518	438297	780	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_437518_438297		Zn-dependent proteases		CDS	peptidase M50 family protein			
-	438302	438739	438	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_438739_438302		Protein of unknown function (DUF3151).		CDS	conserved hypothetical protein			
+	438822	439649	828	PROBABLE CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_438822_439649		hypothetical protein		CDS	conserved hypothetical protein			
+	439871	441253	1383	Mg/Co/Ni transporter MgtE / CBS domain	peg	gi|57116681|ref|NC_000962.2|_439871_441253		Mg2+ transporter (mgtE)		CDS	magnesium transporter		mgtE	
-	441265	442299	1035	Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	peg	gi|57116681|ref|NC_000962.2|_442299_441265		fructose-bisphosphate aldolase (EC 4.1.2.13)	4.1.2.13	CDS	fructose-bisphosphate aldolase, class II	4.1.2.13	fbaA	
-	443067	444197	1131	fructose-bisphosphate aldolase family protein	peg	gi|57116681|ref|NC_000962.2|_444197_443067		Predicted glycosyl hydrolase		CDS	glycosyl hydrolase 76 family protein			
+	442395	443078	684	DedA protein	peg	gi|57116681|ref|NC_000962.2|_442395_443078		Uncharacterized membrane-associated protein		CDS	conserved hypothetical protein			
-	444222	444815	594	FIG027960: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_444815_444222		Uncharacterized protein conserved in bacteria		CDS	zeta toxin family protein			
-	444844	445233	390	FIG00824223: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_445233_444844		Protein of unknown function (DUF3423).		CDS	conserved hypothetical protein			
-	445314	446534	1221	Carbon monoxide oxidation accessory protein CoxE	peg	gi|57116681|ref|NC_000962.2|_446525_445314		Protein containing von Willebrand factor type A (vWA) domain		CDS	VWA domain containing CoxE-like family protein			
-	446531	447133	603	Carbon monoxide oxidation accessory protein CoxG	peg	gi|57116681|ref|NC_000962.2|_447133_446531		Uncharacterized conserved protein		CDS	carbon monoxide dehydrogenase subunit G family protein			
-	447147	448043	897	Carbon monoxide oxidation accessory protein CoxD	peg	gi|57116681|ref|NC_000962.2|_448043_447147		MoxR-like ATPases		CDS	AAA domain family protein			
-	448040	448633	594	Uncharacterized MobA-related protein	peg	gi|57116681|ref|NC_000962.2|_448633_448040		Uncharacterized MobA-related protein		CDS	moba relate protein			
-	448630	449385	756	Aerobic carbon monoxide dehydrogenase molybdenum cofactor insertion protein CoxF	peg	gi|57116681|ref|NC_000962.2|_449385_448630		Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family		CDS	xdhC and CoxI family protein			
-	449404	451803	2400	"Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )"	peg	gi|57116681|ref|NC_000962.2|_451803_449404		carbon monoxide dehydrogenase, large subunit apoprotein	1.2.99.2	CDS	carbon-monoxide dehydrogenase, large subunit	1.2.99.2		
-	451800	452279	480	Carbon monoxide dehydrogenase small chain (EC 1.2.99.2)	peg	gi|57116681|ref|NC_000962.2|_452279_451800		Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs	1.2.99.2	CDS	carbon monoxide dehydrogenase small chain	1.2.99.2	coxS	
-	452294	453196	903	Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)	peg	gi|57116681|ref|NC_000962.2|_453154_452294		carbon monoxide dehydrogenase, medium subunit	1.2.99.2	CDS	FAD binding domain in molybdopterin dehydrogenase family protein			
-	453230	454396	1167	"CO dehydrogenases maturation factor, CoxF family"	peg	gi|57116681|ref|NC_000962.2|_454396_453230		Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family		CDS	xanthine dehydrogenase			
+	454421	455386	966	Transcription regulator in CO-DH cluster	peg	gi|57116681|ref|NC_000962.2|_454421_455386		transcriptional regulator, LysR family		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	455631	455858	228	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_455631_455858		hypothetical protein		CDS	hypothetical protein			
+	455977	456192	216	Preprotein translocase subunit SecE2	peg	gi|57116681|ref|NC_000962.2|_455983_456192		Uncharacterized conserved protein		CDS	dodecin family protein			
-	456268	456918	651	probable RNA methyltransferase	peg	gi|57116681|ref|NC_000962.2|_456819_456268		rRNA methylases		CDS	spoU rRNA Methylase family protein			
-	456915	457823	909	hypothetical protein Rv0381c	peg	gi|57116681|ref|NC_000962.2|_457823_456915		hypothetical protein		CDS	conserved hypothetical protein			
-	457841	458380	540	Orotate phosphoribosyltransferase (EC 2.4.2.10)	peg	gi|57116681|ref|NC_000962.2|_458380_457841		orotate phosphoribosyltransferase (EC 2.4.2.10)	2.4.2.10	CDS	orotate phosphoribosyltransferase	2.4.2.10	pyrE	
-	458461	459315	855	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_459315_458461		hypothetical protein		CDS	putative conserved secreted protein			
-	459456	462002	2547	ClpB protein	peg	gi|57116681|ref|NC_000962.2|_462002_459456		ATP-dependent chaperone ClpB		CDS	ATP-dependent chaperone protein ClpB		clpB	
+	462030	463307	1278	Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	peg	gi|57116681|ref|NC_000962.2|_462135_463307		2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases		CDS	oxidoreductase NAD-binding domain protein			
+	463411	466668	3258	"Adenylyl cyclase class-3/4/guanylyl cyclase / Disease resistance domain-containing protein / Tetratricopeptide repeat-containing protein / Transcriptional regulator, LuxR family"	peg	gi|57116681|ref|NC_000962.2|_463411_466668		Predicted ATPase		CDS	bacterial regulatory s, luxR family protein			
-	466672	467406	735	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_467406_466672		Polymorphic PE/PPE proteins C terminal.		CDS	polymorphic PE/PPE s C terminal family protein			
-	467459	468001	543	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_468001_467459		PPE family.		CDS	PPE family protein			
-	468194	468364	171	FIG00822289: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_468364_468194					putative predicted protein			
+	468335	469594	1260	Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)	peg	gi|57116681|ref|NC_000962.2|_468416_469594		formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-)	2.1.2.2	CDS	phosphoribosylglycinamide formyltransferase 2	2.1.2.-	purT	
+	469591	470013	423	Rhodanese-related sulfurtransferase	peg	gi|57116681|ref|NC_000962.2|_469591_470013		Rhodanese-related sulfurtransferase		CDS	rhodanese-like domain protein			
-	471227	472639	1413	NADH dehydrogenase (EC 1.6.99.3)	peg	gi|57116681|ref|NC_000962.2|_472591_471227		NADH dehydrogenase, FAD-containing subunit	1.6.99.3	CDS	glucose inhibited division A family protein			
+	469998	471230	1233	O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	peg	gi|57116681|ref|NC_000962.2|_469998_471230		O-succinylhomoserine sulfhydrylase	2.5.1.-	CDS	O-succinylhomoserine sulfhydrylase	4.2.99.-	metZ	
+	472842	473105	264	CONSERVED 13E12 REPEAT FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_472842_473105		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
+	473114	474106	993	13E12 repeat family protein	peg	gi|57116681|ref|NC_000962.2|_473114_474106		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
-	474122	474841	720	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_474811_474122		hypothetical protein		CDS	putative secreted protein			
+	474940	475344	405	FIG00820904: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_474949_475344		hypothetical protein		CDS	hypothetical protein			
+	475326	475742	417	FIG00821159: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_475326_475742		hypothetical protein		CDS	conserved hypothetical protein			
+	475816	476184	369	13E12 repeat family protein	peg	gi|57116681|ref|NC_000962.2|_475816_476184		hypothetical protein		CDS	putative hNH endonuclease			
-	476679	477320	642	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_477320_476679		hypothetical protein		CDS	putative secreted protein			
-	477327	478556	1230	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg	gi|57116681|ref|NC_000962.2|_478556_477327		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
-	478566	479756	1191	Glutaryl-CoA dehydrogenase (EC 1.3.99.7)	peg	gi|57116681|ref|NC_000962.2|_479756_478566		Acyl-CoA dehydrogenases	1.3.99.7	CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
+	479789	480160	372	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_479789_480160		Protein of unknown function (DUF3054).		CDS	conserved hypothetical protein			
-	480355	483231	2877	Transmembrane transport protein MmpL1	peg	gi|57116681|ref|NC_000962.2|_483231_480355		Transport protein		CDS	transport family protein			
-	483228	483656	429	"membrane protein, MmpS family"	peg	gi|57116681|ref|NC_000962.2|_483656_483228		Mycobacterium membrane protein.		CDS	mycobacterium membrane family protein			
+	484037	485734	1698	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_484037_485734		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	long-chain-fatty-acid--AMP ligase FadD30	6.2.1.-	fadD30	
-	489887	490705	819				Zn-dependent hydrolases, including glyoxylases		CDS				
+	485731	489939	4209	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	peg	gi|57116681|ref|NC_000962.2|_487027_489939		Polyketide synthase modules and related proteins		CDS	phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	
+	490783	491793	1011	F420-dependent glucose-6-phosphate dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_490783_491793		glucose-6-phosphate dehydrogenase (coenzyme-F420)	1.1.98.2	CDS	glucose-6-phosphate dehydrogenase	1.1.98.2	fgd	
+	491786	493858	2073	Phosphate acetyltransferase (EC 2.3.1.8)	peg	gi|57116681|ref|NC_000962.2|_491861_493858		phosphotransacetylase (EC 2.3.1.8)	2.3.1.8	CDS	phosphate acetyltransferase	2.3.1.8	pta	
+	493851	495008	1158	Acetate kinase (EC 2.7.2.1)	peg	gi|57116681|ref|NC_000962.2|_493851_495008		acetate kinase (EC 2.7.2.1)	2.7.2.1	CDS	acetate kinase	2.7.2.1	ackA	
-	495062	497314	2253	serine/threonine protein kinase	peg	gi|57116681|ref|NC_000962.2|_497314_495062		Protein kinase domain.	2.7.11.1	CDS	putative serine/threonine-protein kinase pknG			
-	497314	498300	987	"""Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)"""	peg	gi|57116681|ref|NC_000962.2|_498240_497314		amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)		CDS	bacterial extracellular solute-binding s, 3 family protein			
-	498300	499619	1320	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_499619_498300		hypothetical protein		CDS	putative cONSERVED MEMBRANE PROTEIN			
-	500350	501018	669	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	peg	gi|57116681|ref|NC_000962.2|_501018_500350		thiamine-phosphate diphosphorylase	2.5.1.3	CDS	thiamine-phosphate pyrophosphorylase	2.5.1.3	thiE	
+	499770	500366	597	"""Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase) """	peg	gi|57116681|ref|NC_000962.2|_499770_500366		ADP-ribose pyrophosphatase	3.6.1.-	CDS	NUDIX domain protein			
+	501148	502170	1023	Glycine oxidase ThiO (EC 1.4.3.19)	peg	gi|57116681|ref|NC_000962.2|_501148_502170		glycine oxidase (EC 1.4.3.19)	1.4.3.19	CDS	glycine oxidase ThiO	1.4.3.19	thiO	
+	502167	502373	207	sulfur carrier protein ThiS	peg	gi|57116681|ref|NC_000962.2|_502167_502373		thiamine biosynthesis protein ThiS		CDS	thiamine biosynthesis protein ThiS		thiS	
+	502366	503124	759	Thiazole biosynthesis protein ThiG	peg	gi|57116681|ref|NC_000962.2|_502366_503124		thiazole-phosphate synthase		CDS	thiazole synthase	4.-.-.-	thiG	
+	503146	503298	153	FIG00822290: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_503146_503298					conserved hypothetical protein			
+	503496	504998	1503	"Aminopeptidase Y (Arg, Lys, Leu preference) (EC 3.4.11.15)"	peg	gi|57116681|ref|NC_000962.2|_503514_504998		aminopeptidase Y (EC:3.4.11.15). Metallo peptidase. MEROPS family M28A	3.4.11.-	CDS	peptidase M20/M25/M40 family protein			
-	506561	506902	342	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_506902_506561		hypothetical protein		CDS	putative tRANSMEMBRANE PROTEIN			
+	505086	506582	1497	Lipoprotein peptidase LpqM	peg	gi|57116681|ref|NC_000962.2|_505140_506582		Predicted metalloprotease		CDS	neutral zinc metallopeptidase family protein			
-	507132	507761	630	FIG022825: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_507761_507132		Predicted hydrolase of the alpha/beta-hydrolase fold		CDS	alpha/beta hydrolase family protein			
-	507758	508585	828	Phosphomethylpyrimidine kinase (EC 2.7.4.7)	peg	gi|57116681|ref|NC_000962.2|_508585_507758		phosphomethylpyrimidine kinase	2.7.4.7, 2.7.1.49	CDS	phosphomethylpyrimidine kinase	2.7.4.7	thiD	
-	508582	510225	1644	Thiamin biosynthesis protein ThiC	peg	gi|57116681|ref|NC_000962.2|_510225_508582		hydroxymethylpyrimidine synthase		CDS	thiamine biosynthesis protein ThiC		thiC	
-	510377	510652	276	FIG00821936: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_510577_510377		hypothetical protein		CDS	conserved hypothetical protein			
-	510702	515321	4620	Metal cation transporting P-type ATPase CtpH	peg	gi|57116681|ref|NC_000962.2|_515321_510702		ATPase, P-type (transporting), HAD superfamily, subfamily IC		CDS	HAD ATPase, P-type, IC family protein	3.6.3.-		
-	515373	515834	462	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_515834_515373		hypothetical protein		CDS	putative transmembrane protein			
-	516017	516892	876	Exodeoxyribonuclease III (EC 3.1.11.2)	peg	gi|57116681|ref|NC_000962.2|_516892_516017		Exodeoxyribonuclease III (EC 3.1.11.2)	3.1.11.2	CDS	exodeoxyribonuclease III	3.1.11.2	xth	
-	516895	517803	909	Histone acetyltransferase HPA2 and related acetyltransferases	peg	gi|57116681|ref|NC_000962.2|_517740_516895		hypothetical protein		CDS	putative acetyltransferase			
-	517803	518396	594	Peptide deformylase (EC 3.5.1.88)	peg	gi|57116681|ref|NC_000962.2|_518396_517803		peptide deformylase	3.5.1.88	CDS	peptide deformylase	3.5.1.88	def	
+	518733	519041	309	FIG00822394: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_518745_519041		Protein of unknown function (DUF3263).		CDS	conserved hypothetical protein			
+	519085	519567	483	Tuberculin related peptide	peg	gi|57116681|ref|NC_000962.2|_519085_519567		LytR cell envelope-related transcriptional attenuator.		CDS	lytR cell envelope-related transcriptional attenuator family protein			
+	519600	520322	723	Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)	peg	gi|57116681|ref|NC_000962.2|_519600_520322		Cu/Zn superoxide dismutase	1.15.1.1	CDS	superoxide dismutase [Cu-Zn]	1.15.1.1	sodC	
+	520303	521454	1152	Carboxylate-amine ligase	peg	gi|57116681|ref|NC_000962.2|_520303_521454		carboxylate-amine ligase, YbdK family	6.3.-	CDS	carboxylate-amine ligase, YbdK family protein	6.3.-.-		
+	521511	522167	657	"Uncharacterized protein, similar to the N-terminal domain of Lon protease"	peg	gi|57116681|ref|NC_000962.2|_521511_522167		Uncharacterized protein, similar to the N-terminal domain of Lon protease		CDS	ATP-dependent protease La domain protein			
-	522347	524533	2187	Cell division protein FtsH (EC 3.4.24.-)	peg	gi|57116681|ref|NC_000962.2|_524533_522347		ATPases of the AAA+ class		CDS	spermatogenesis-associated 5 domain protein		SPATA5	
-	524530	525390	861	CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)	peg	gi|57116681|ref|NC_000962.2|_525390_524530		CDP-diacylglycerol--serine O-phosphatidyltransferase	2.7.8.8	CDS	CDP-diacylglycerol-serine O-phosphatidyltransferase	2.7.8.8	pssA	
-	525387	526082	696	Phosphatidylserine decarboxylase (EC 4.1.1.65)	peg	gi|57116681|ref|NC_000962.2|_526082_525387		phosphatidylserine decarboxylase precursor-related protein	4.1.1.65	CDS	phosphatidylserine decarboxylase family protein			
-	526143	527360	1218	Molybdopterin biosynthesis protein MoeA	peg	gi|57116681|ref|NC_000962.2|_527360_526143		molybdopterin molybdochelatase (EC 2.10.1.1)		CDS	molybdenum cofactor synthesis domain protein			
-	527379	528314	936	probable oxidoreductase/Short-chain dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_528314_527379		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
+	528608	530230	1623	Heat shock protein 60 family chaperone GroEL	peg	gi|57116681|ref|NC_000962.2|_528608_530230		chaperonin GroL		CDS	chaperonin GroL		groL	
-	530296	530724	429	FIG00825576: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_530724_530296		hypothetical protein		CDS	conserved hypothetical protein			
-	530751	532214	1464	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_532214_530751		PPE-repeat proteins		CDS	PPE family protein			
+	532354	532911	558	FIG00820451: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_532396_532911		Protein of unknown function (DUF664).		CDS	dinB superfamily protein			
-	533091	533789	699	FIG111991: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_533789_533091		Uncharacterized protein conserved in bacteria		CDS	anti-sigma-K factor rskA		rskA	
-	533833	534396	564	alternative RNA polymerase sigma factor SigK	peg	gi|57116681|ref|NC_000962.2|_534396_533833		RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma factor, sigma-70 family protein			
-	534445	535227	783	FIG005069: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_535227_534445		Predicted membrane protein		CDS	conserved hypothetical protein			
-	535224	536507	1284	"Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), plant type"	peg	gi|57116681|ref|NC_000962.2|_536507_535224		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	mycolic acid cyclopropane synthetase family protein			
-	536504	537235	732	FIG001571: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_537235_536504		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	537229	538524	1296	"COG2907: Amine oxidase, flavin-containing"	peg	gi|57116681|ref|NC_000962.2|_538524_537229		Predicted NAD/FAD-binding protein		CDS	flavin containing amine oxidoreductase family protein			
-	538588	541491	2904	Transmembrane transport protein MmpL4	peg	gi|57116681|ref|NC_000962.2|_541491_538588		Transport protein		CDS	transport family protein			
-	541488	541910	423	"membrane protein, MmpS family"	peg	gi|57116681|ref|NC_000962.2|_541910_541488		Mycobacterium membrane protein.		CDS	mycobacterium membrane family protein			
+	542091	542852	762	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_542160_542852		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	543174	544730	1557	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_543195_544730		PPE-repeat proteins		CDS	PPE family protein			
-	544736	545059	324	FIG00820218: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_545059_544736		hypothetical protein		CDS	conserved hypothetical protein			
-	545188	545418	231	FIG00821186: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_545319_545188		hypothetical protein		CDS	hypothetical protein			
-	545375	545821	447	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_545821_545375		Protein of unknown function (DUF2782).		CDS	conserved hypothetical protein			
-	545889	546803	915	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_546803_545889		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase/isomerase family protein			
-	547586	549616	2031	PROBABLE PEPTIDASE( EC:3.4.- )	peg	gi|57116681|ref|NC_000962.2|_549607_547586		Serine proteases of the peptidase family S9A	3.4.21.26	CDS	prolyl oligopeptidase family protein			
+	549675	551198	1524	Aldehyde dehydrogenase (EC 1.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_549675_551198		NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	EPTC-inducible aldehyde dehydrogenase	1.2.1.3	thcA	
+	551198	551689	492	FIG00821442: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_551216_551689		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	551710	551988	279	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_551710_551988		hypothetical protein		CDS	putative membrane protein			
+	551981	552550	570	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_552140_552550		hypothetical protein		CDS	putative tRANSMEMBRANE PROTEIN			
+	552614	554008	1395	Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	peg	gi|57116681|ref|NC_000962.2|_552614_554008		dihydrolipoamide dehydrogenase (EC 1.8.1.4)	1.8.1.4	CDS	dihydrolipoyl dehydrogenase	1.8.1.4	lpdA	
+	554016	554309	294	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_554055_554309		hypothetical protein		CDS	putative membrane protein			
-	554313	554885	573	FIG00821074: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_554885_554313		Uncharacterized conserved protein		CDS	carboxymuconolactone decarboxylase family protein			
-	554882	556306	1425	"""Transcriptional regulator, XRE family"""	peg	gi|57116681|ref|NC_000962.2|_556306_554882		Predicted transcriptional regulator		CDS	helix-turn-helix family protein			
+	556458	557252	795	Acyl-ACP thioesterase	peg	gi|57116681|ref|NC_000962.2|_556458_557252		Acyl-ACP thioesterase		CDS	thioesterase superfamily protein			
+	557527	558813	1287	Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30)	peg	gi|57116681|ref|NC_000962.2|_557527_558813		isocitrate lyase	4.1.3.1	CDS	isocitrate lyase	4.1.3.1	aceA	
+	558895	559755	861	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	peg	gi|57116681|ref|NC_000962.2|_558895_559755		3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	1.1.1.157	CDS	3-hydroxybutyryl-CoA dehydrogenase	1.1.1.157	fadB2	
+	559888	560748	861	POSSIBLE MYCOLIC ACID SYNTHASE UMAA1	peg	gi|57116681|ref|NC_000962.2|_559888_560748		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	cyclopropane mycolic acid synthase 3	2.1.1.79	pcaA	
-	560848	561711	864	Mycolic acid synthase (PcaA/UmaA2) (Cyclopropane Synthase)	peg	gi|57116681|ref|NC_000962.2|_561705_560848		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	cyclopropane mycolic acid synthase 3	2.1.1.79	pcaA	
-	561864	562148	285	FIG00823681: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_562058_561864		hypothetical protein		CDS	conserved hypothetical protein			
-	562225	562713	489	FIG00820166: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_562713_562225		hypothetical protein		CDS	putative prenyltransferase			
-	562723	563493	771	"""Transcriptional regulator, TetR family"""	peg	gi|57116681|ref|NC_000962.2|_563427_562723		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	563546	564934	1389	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_563546_564934		Predicted membrane protein		CDS	conserved hypothetical protein			
+	565021	565443	423	"""Transcriptional regulator, XRE family"""	peg	gi|57116681|ref|NC_000962.2|_565021_565443		Predicted transcriptional regulators		CDS	helix-turn-helix family protein			
+	565797	566396	600	Iron-regulated heparin binding hemagglutinin HbhA (Adhesin)	peg	gi|57116681|ref|NC_000962.2|_565797_566396		hypothetical protein		CDS	putative iron-regulated heparin binding hemagglutinin HbhA			
+	566484	566771	288	FIG00820770: hypothetical membrane protein	peg	gi|57116681|ref|NC_000962.2|_566484_566771		Protein of unknown function (DUF2516).		CDS	conserved hypothetical protein			
+	566776	567222	447	POSSIBLE CONSERVED SECRETED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_567004_567222		Protein of unknown function (DUF2599).		CDS	conserved hypothetical protein			
+	567222	567896	675	Deoxyribose-phosphate aldolase (EC 4.1.2.4)	peg	gi|57116681|ref|NC_000962.2|_567222_567896		deoxyribose-phosphate aldolase	4.1.2.4	CDS	deoxyribose-phosphate aldolase	4.1.2.4	deoC	
-	567921	568670	750	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_568670_567921		Protein of unknown function (DUF2993).		CDS	conserved hypothetical protein			
-	568964	569806	843	Carbon-nitrogen hydrolase	peg	gi|57116681|ref|NC_000962.2|_569806_568964		Predicted amidohydrolase		CDS	carbon-nitrogen hydrolase family protein			
-	569817	569978	162	Carbon-nitrogen hydrolase	peg	gi|57116681|ref|NC_000962.2|_569978_569817					conserved hypothetical protein			
-	569988	570512	525	FIG00996480: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_570512_569988		Protein of unknown function (DUF2505).		CDS	conserved hypothetical protein			
+	570539	571648	1110	UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	peg	gi|57116681|ref|NC_000962.2|_570539_571648		UDP-N-acetylmuramate dehydrogenase (EC 1.1.1.158)	1.1.1.158	CDS	UDP-N-acetylenolpyruvoylglucosamine reductase	1.1.1.158	murB	
-	573046	573801	756	Serine 3-dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_573801_573046		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
+	571710	573065	1356	Possible lipoprotein LprQ	peg	gi|57116681|ref|NC_000962.2|_571827_573065		Uncharacterized protein conserved in bacteria		CDS	L,D-transpeptidase catalytic domain protein			
+	573984	575300	1317	Transcriptional regulatory protein	peg	gi|57116681|ref|NC_000962.2|_573984_575300		Transcriptional regulator/sugar kinase		CDS	ROK family protein			
+	575348	576790	1443	Glycosyltransferase MshA involved in mycothiol biosynthesis (EC 2.4.1.-)	peg	gi|57116681|ref|NC_000962.2|_575348_576790		UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase	2.4.1.250	CDS	D-inositol-3-phosphate glycosyltransferase	2.4.1.250	mshA	
+	576787	577338	552	Uncharacterized protein Rv0487/MT0505 clustered with mycothiol biosynthesis gene	peg	gi|57116681|ref|NC_000962.2|_576817_577338		Putative bacterial sensory transduction regulator.		CDS	bacterial sensory transduction regulator family protein			
+	577631	578269	639	"""Transporter, LysE family"""	peg	gi|57116681|ref|NC_000962.2|_577631_578269		L-lysine exporter		CDS	L-lysine exporter family protein		lysE	
+	578405	579175	771	Phosphoglycerate mutase (EC 5.4.2.1)	peg	gi|57116681|ref|NC_000962.2|_578405_579175		phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1	CDS	phosphoglycerate mutase 1 family protein			
+	579349	580581	1233	Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3); Sensor-like histidine kinase senX3 (EC 2.7.13.3)	peg	gi|57116681|ref|NC_000962.2|_579349_580581		Signal transduction histidine kinase	2.7.13.3	CDS	signal-transduction histidine kinase senX3	2.7.13.3	senX3	
-	581489	583378	1890	GMC-type oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_583378_581489		Choline dehydrogenase and related flavoproteins		CDS	FAD binding domain protein			
+	580800	581492	693	Phosphate regulon transcriptional regulatory protein PhoB (SphR); Sensory transduction protein regX3	peg	gi|57116681|ref|NC_000962.2|_580800_581492		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	sensory transduction protein regX3		regX3	
-	583375	583704	330	FIG00823091: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_583704_583375		hypothetical protein		CDS	conserved hypothetical protein			
-	583701	584651	951	FIG00824158: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_584651_583701		hypothetical protein		CDS	conserved hypothetical protein			
+	584707	585423	717	"Lactate-responsive regulator LldR in Enterobacteria, GntR family"	peg	gi|57116681|ref|NC_000962.2|_584707_585423		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
-	585424	586194	771	FIG00820527: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_586194_585424		hypothetical protein		CDS	conserved hypothetical protein			
+	586346	587380	1035	Exopolyphosphatase (EC 3.6.1.11)	peg	gi|57116681|ref|NC_000962.2|_586358_587380		Exopolyphosphatase	3.6.1.11, 3.6.1.40	CDS	ppx/GppA phosphatase family protein			
+	587377	588309	933	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_587377_588309		hypothetical protein		CDS	conserved hypothetical protein			
+	588325	589167	843	"""AP endonuclease, family protein 2"""	peg	gi|57116681|ref|NC_000962.2|_588364_589167		Sugar phosphate isomerases/epimerases		CDS	xylose isomerase-like TIM barrel family protein			
+	589183	590058	876	TesB-like acyl-CoA thioesterase 3	peg	gi|57116681|ref|NC_000962.2|_589183_590058		Uncharacterized protein, possibly involved in aromatic compounds catabolism		CDS	thioesterase-like superfamily protein			
+	590083	590970	888	Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	peg	gi|57116681|ref|NC_000962.2|_590083_590970		pyrroline-5-carboxylate reductase (EC 1.5.1.2)	1.5.1.2	CDS	pyrroline-5-carboxylate reductase	1.5.1.2	proC	
+	591111	591347	237	"""DNA binding domain protein, excisionase family"""	peg	gi|57116681|ref|NC_000962.2|_591111_591347		DNA binding domain, excisionase family		CDS	DNA binding , excisionase family domain protein			
+	591654	592784	1131	UDP-glucose 4-epimerase (EC 5.1.3.2)	peg	gi|57116681|ref|NC_000962.2|_591654_592784		Nucleoside-diphosphate-sugar epimerases	5.1.3.2	CDS	NAD dependent epimerase/dehydratase family protein			
+	592791	593867	1077	Phospholipid/glycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_592791_593867		1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	acyltransferase family protein			
-	593871	594779	909	"Cyclopropane-fatty-acyl-phospholipid synthase 2, CmaA2 (EC 2.1.1.79)"	peg	gi|57116681|ref|NC_000962.2|_594779_593871		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	cyclopropane mycolic acid synthase 2	2.1.1.79	cmaA2	
-	594802	595302	501	(3R)-hydroxyacyl-ACP dehydratase subunit HadA	peg	gi|57116681|ref|NC_000962.2|_595302_594802		Acyl dehydratase		CDS	maoC like domain protein			
-	595464	596390	927	Phosphoserine phosphatase (EC 3.1.3.3)	peg	gi|57116681|ref|NC_000962.2|_596390_595464		HAD-superfamily subfamily IB hydrolase, TIGR01490		CDS	HAD phosphoserine phosphatase-like hydrolase, IB family protein			
+	596765	597202	438	"membrane protein, MmpS family"	peg	gi|57116681|ref|NC_000962.2|_596786_597202		Mycobacterium membrane protein.		CDS	mycobacterium membrane family protein			
+	597199	600105	2907	Putative membrane protein	peg	gi|57116681|ref|NC_000962.2|_597199_600105		Transport protein		CDS	transport family protein			
+	600113	600391	279	FIG00822170: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_600113_600391		Glutaredoxin-like domain (DUF836).		CDS	conserved hypothetical protein			
+	600441	601847	1407	Glutamyl-tRNA reductase (EC 1.2.1.70)	peg	gi|57116681|ref|NC_000962.2|_600441_601847		glutamyl-tRNA reductase (EC 1.2.1.70)	1.2.1.70	CDS	glutamyl-tRNA reductase	1.2.1.70	hemA	
+	601857	602786	930	Porphobilinogen deaminase (EC 2.5.1.61)	peg	gi|57116681|ref|NC_000962.2|_601857_602786		hydroxymethylbilane synthase (EC 2.5.1.61)	2.5.1.61	CDS	porphobilinogen deaminase	2.5.1.61	hemC	
+	602810	604516	1707	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)	peg	gi|57116681|ref|NC_000962.2|_602810_604516		uroporphyrinogen-III synthase (EC 4.2.1.75)/uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107)	2.1.1.107, 4.2.1.75	CDS	uroporphyrinogen-III synthase HemD family protein			
+	604602	605591	990	Porphobilinogen synthase (EC 4.2.1.24)	peg	gi|57116681|ref|NC_000962.2|_604701_605591		porphobilinogen synthase (EC 4.2.1.24)	4.2.1.24	CDS	delta-aminolevulinic acid dehydratase family protein			
+	605604	606152	549	Transmembrane transport protein MmpL2	peg	gi|57116681|ref|NC_000962.2|_605604_606152		hypothetical protein		CDS	putative transmembrane protein			
+	606149	606448	300	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_606149_606448		hypothetical protein		CDS	putative transmembrane protein			
-	608059	608535	477	Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV	peg	gi|57116681|ref|NC_000962.2|_608415_608059		Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)		CDS	STAS domain protein			
+	606527	608062	1536	13E12 repeat family protein	peg	gi|57116681|ref|NC_000962.2|_606527_608062		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
+	608824	610056	1233	Membrane acyltransferase	peg	gi|57116681|ref|NC_000962.2|_608824_610056		Predicted acyltransferases		CDS	acyltransferase family protein			
+	610188	610883	696	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_610188_610883		Lysophospholipase L1 and related esterases		CDS	GDSL-like Lipase/Acylhydrolase family protein			
-	611172	612074	903	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_612074_611172		Enterochelin esterase and related enzymes		CDS	esterase family protein			
+	612255	612605	351	Similar to methyltransferase domain of sarcosine-dimethylglycine methyltransferase	peg	gi|57116681|ref|NC_000962.2|_612255_612605		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
+	612598	612903	306	POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT)	peg	gi|57116681|ref|NC_000962.2|_612598_612903		hypothetical protein		CDS	glycine-sarcosine methyltransferase domain protein			
-	614326	614721	396	FIG00820204: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_614721_614326		deazaflavin-dependent nitroreductase family protein		CDS	deazaflavin-dependent oxidoreductase, nitroreductase family protein			
+	613038	614342	1305	Aromatic amino acid transport protein AroP	peg	gi|57116681|ref|NC_000962.2|_613038_614342		gamma-aminobutyrate:proton symporter, AAT family (TC 2.A.3.1.5)		CDS	amino acid permease family protein			
+	614835	616223	1389	Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	peg	gi|57116681|ref|NC_000962.2|_614835_616223		glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)	5.4.3.8	CDS	glutamate-1-semialdehyde-2,1-aminomutase	5.4.3.8	hemL	
+	616223	616831	609	"Hypothetical, related to broad specificity phosphatases COG0406"	peg	gi|57116681|ref|NC_000962.2|_616223_616831		Fructose-2,6-bisphosphatase		CDS	conserved hypothetical protein			
+	616879	617496	618	Thiol:disulfide oxidoreductase related to ResA	peg	gi|57116681|ref|NC_000962.2|_616879_617496		Thiol-disulfide isomerase and thioredoxins		CDS	secreted thiol-disulfide isomerase/thioredoxin			
+	617493	618272	780	Cytochrome c-type biogenesis protein CcdA (DsbD analog)	peg	gi|57116681|ref|NC_000962.2|_617493_618272		Cytochrome c biogenesis protein		CDS	cytochrome C biogenesis transmembrane region family protein			
+	618269	619894	1626	Ccs1/ResB-related putative cytochrome C-type biogenesis protein	peg	gi|57116681|ref|NC_000962.2|_618269_619894		ResB protein required for cytochrome c biosynthesis		CDS	resB-like family protein			
+	619891	620865	975	Cytochrome c-type biogenesis protein CcsA/ResC	peg	gi|57116681|ref|NC_000962.2|_619891_620865		cytochrome c-type biogenesis protein CcsB		CDS	cytochrome c-type biogenesis protein CcsB		ccsB	
-	622121	622282	162	FIG00822430: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_622282_622121		hypothetical protein		CDS	conserved hypothetical protein			
+	620913	622124	1212	RD1 region associated protein Rv3876	peg	gi|57116681|ref|NC_000962.2|_620937_622124		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
+	622329	622646	318	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_622329_622646		Protein of unknown function (DUF4229).		CDS	conserved hypothetical protein			
-	624473	625480	1008				3-oxoacyl-[acyl-carrier-protein] synthase III (EC 2.3.1.41)	2.3.1.-	CDS				
+	622793	624577	1785	PE-PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_622793_624577		PE family.		CDS	PE family protein			
-	625562	626440	879	"1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC 2.5.1.74)"	peg	gi|57116681|ref|NC_000962.2|_626440_625562		1,4-dihydroxy-2-naphthoate prenyltransferase (EC 2.5.1.74)	2.5.1.74, 2.5.1.-	CDS	1,4-dihydroxy-2-naphthoate octaprenyltransferase	2.5.1.74	menA	
+	626457	627251	795	5'-methylthioadenosine phosphorylase (EC 2.4.2.28)	peg	gi|57116681|ref|NC_000962.2|_626475_627251		methylthioadenosine phosphorylase (EC 2.4.2.28)	2.4.2.28	CDS	methylthioadenosine phosphorylase	2.4.2.28	mtnP	
+	627248	628288	1041	UDP-glucose 4-epimerase (EC 5.1.3.2)	peg	gi|57116681|ref|NC_000962.2|_627254_628288		Nucleoside-diphosphate-sugar epimerases	5.1.3.2	CDS	polysaccharide biosynthesis family protein			
-	628298	629731	1434	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_629731_628298		hypothetical protein		CDS	putative membrane protein			
+	630040	631686	1647	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_630040_631686		hypothetical protein		CDS	putative conserved membrane protein			
+	631719	632375	657	PROBABLE DOLICHYL-PHOSPHATE SUGAR SYNTHASE (DOLICHOL-PHOSPHATE SUGAR SYNTHETASE) (DOLICHOL-PHOSPHATE SUGAR TRANSFERASE) (SUGAR PHOSPHORYLDOLICHOL SYNTHASE)( EC:2.4.1.- )	peg	gi|57116681|ref|NC_000962.2|_631719_632375		Glycosyltransferases involved in cell wall biogenesis		CDS	glycosyl transferase 2 family protein			
+	632372	633034	663	FIG00821404: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_632372_633034		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	633055	634404	1350	Putative ESX-1 secretion system component Rv3877	peg	gi|57116681|ref|NC_000962.2|_634380_633055		hypothetical protein		CDS	putative membrane protein			
-	634416	635504	1089	O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	peg	gi|57116681|ref|NC_000962.2|_635504_634416		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.26	CDS	AMP-binding enzyme family protein			
-	635573	635875	303	FIG00995255: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_635875_635573		Protein of unknown function (DUF3349).		CDS	conserved hypothetical protein			
-	635935	636213	279	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_636213_635935		hypothetical protein		CDS	conserved hypothetical protein			
-	636210	637463	1254	Probable low-affinity inorganic phosphate transporter	peg	gi|57116681|ref|NC_000962.2|_637463_636210		Phosphate/sulphate permeases		CDS	phosphate transporter family protein			
-	637583	637969	387	FIG020377: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_637969_637583		Predicted enzyme related to lactoylglutathione lyase		CDS	glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein			
-	638032	638916	885	"""Oxidoreductase, short-chain dehydrogenase/reductase family"""	peg	gi|57116681|ref|NC_000962.2|_638916_638032		Short-chain dehydrogenases of various substrate specificities		CDS	fatty acyl-CoA reductase	1.2.1.n2	acr1	
-	639012	639914	903	Naphthoate synthase (EC 4.1.3.36)	peg	gi|57116681|ref|NC_000962.2|_639875_639012		1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36)	4.1.3.36	CDS	naphthoate synthase	4.1.3.36	menB	
-	640228	640641	414	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_640608_640228		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC3			
-	640638	640856	219	Antitoxin 1a	peg	gi|57116681|ref|NC_000962.2|_640856_640638		Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid		CDS	antitoxin VapB3		vapB3	
+	640888	641043	156	FIG00821203: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_640888_641043					putative predicted protein			
-	641096	642712	1617	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_642712_641096		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	AMP-binding enzyme family protein			
+	642880	644493	1614	Amidohydrolase family protein	peg	gi|57116681|ref|NC_000962.2|_642880_644493		Predicted metal-dependent hydrolase with the TIM-barrel fold		CDS	amidohydrolase family protein			
+	644490	645470	981	O-succinylbenzoate synthase (EC 4.2.1.113)	peg	gi|57116681|ref|NC_000962.2|_644499_645470		L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily	4.2.1.113	CDS	mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein			
+	645467	646255	789	"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)"	peg	gi|57116681|ref|NC_000962.2|_645467_646255		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	1.11.1.-	CDS	alpha/beta hydrolase fold family protein			
+	646298	647962	1665	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	peg	gi|57116681|ref|NC_000962.2|_646298_647962		2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (EC 2.2.1.9)	2.2.1.9	CDS	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	2.2.1.9	menD	
+	647959	648474	516	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_647959_648474		hypothetical protein		CDS	putative cONSERVED TRANSMEMBRANE PROTEIN			
+	648446	649672	1227	Glycosyltransferase	peg	gi|57116681|ref|NC_000962.2|_648545_649672		Glycosyltransferase	2.4.1.-	CDS	GDP-mannose-dependent alpha-mannosyltransferase	2.4.1.-	mgtA	
+	649689	650393	705	ubiquinone/menaquinone biosynthesis methyltransferase	peg	gi|57116681|ref|NC_000962.2|_649689_650393		2-octaprenyl-6-methoxy-1,4-benzoquinone methylase (EC 2.1.1.-)/demethylmenaquinone methyltransferase (EC 2.1.1.163)	2.1.1.163, 2.1.1.201	CDS	ubiquinone/menaquinone biosynthesis methyltransferase family protein	2.1.1.-		
-	650407	650745	339	POSSIBLE CONSERVED SECRETED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_650745_650407		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
-	650779	651504	726	Possible benzoquinone methyltransferase	peg	gi|57116681|ref|NC_000962.2|_651495_650779		Methyltransferase domain.		CDS	methyltransferase domain protein			
-	651529	652755	1227	Possible oxidoreductase (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_652749_651529		geranylgeranyl reductase family		CDS	geranylgeranyl reductase family protein	1.3.1.-		
+	652771	653778	1008	"Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29)"	peg	gi|57116681|ref|NC_000962.2|_652771_653778		Geranylgeranyl pyrophosphate synthase	2.5.1.30	CDS	geranylgeranyl pyrophosphate synthase	2.5.1.-	ispB	
+	653879	654739	861	Probable protease htpX homolog (EC 3.4.24.-)	peg	gi|57116681|ref|NC_000962.2|_653879_654739		Heat shock protein. Metallo peptidase. MEROPS family M48B	3.4.24.-	CDS	peptidase M48 family protein			
-	654924	655979	1056	Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	peg	gi|57116681|ref|NC_000962.2|_655979_654924		Glycerol-3-phosphate dehydrogenase	1.1.1.94	CDS	NAD-dependent glycerol-3-phosphate dehydrogenase family protein			
-	656010	657470	1461	Cyclohexanone monooxygenase (EC 1.14.13.22)	peg	gi|57116681|ref|NC_000962.2|_657470_656010		Predicted flavoprotein involved in K+ transport		CDS	FAD-containing monooxygenase EthA	1.14.13.-	ethA	
-	657548	658039	492	FIG001943: hypothetical protein YajQ	peg	gi|57116681|ref|NC_000962.2|_658039_657548		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	658318	659340	1023	O-methyltransferase	peg	gi|57116681|ref|NC_000962.2|_658321_659340		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	O-methyltransferase family protein			
+	659450	660868	1419	Cytochrome P450 135B1	peg	gi|57116681|ref|NC_000962.2|_659450_660868		Cytochrome P450		CDS	cytochrome P450 family protein			
+	661003	661269	267	FIG00820469: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_661003_661269		Domain of unknown function (DUF1918).		CDS	conserved hypothetical protein			
+	661295	663373	2079	Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	peg	gi|57116681|ref|NC_000962.2|_661295_663373		ribonucleoside-diphosphate reductase class II (EC 1.17.4.-)	1.17.4.1	CDS	ribonucleoside-diphosphate reductase, alpha subunit	1.17.4.1		
-	663487	664818	1332	Phosphoribosyl transferase domain protein	peg	gi|57116681|ref|NC_000962.2|_664818_663487		Predicted phosphoribosyltransferases		CDS	dienelactone hydrolase domain protein			
-	665042	665383	342	FIG00822603: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_665260_665042		hypothetical protein		CDS	conserved hypothetical protein			
-	665434	665601	168	FIG00820669: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_665601_665434		hypothetical protein		CDS	conserved hypothetical protein			
-	665851	667242	1392	Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	peg	gi|57116681|ref|NC_000962.2|_667242_665851		putative nicotinate phosphoribosyltransferase	2.4.2.11	CDS	nicotinate phosphoribosyltransferase family protein			
-	667252	668394	1143	Capsule biosynthesis protein CapA	peg	gi|57116681|ref|NC_000962.2|_668394_667252		Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)		CDS	bacterial capsule synthesis PGA_cap family protein			
-	668579	669745	1167	Oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_669745_668579		2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases		CDS	FAD binding domain protein			
+	669839	671152	1314	"Transcriptional regulator, ArsR family"	peg	gi|57116681|ref|NC_000962.2|_669839_671152		transcriptional regulator, ArsR family		CDS	conserved hypothetical protein			
+	671160	671951	792	27 kDa antigen Cfp30B	peg	gi|57116681|ref|NC_000962.2|_671160_671951		Predicted enzyme related to lactoylglutathione lyase		CDS	27 kDa antigen Cfp30B		cfp30B	
-	671996	675916	3921	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_675916_671996		PE family.		CDS	PE family protein			
+	676238	676996	759	FIG00825218: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_676238_676996		Uncharacterized conserved protein		CDS	ub domain fused to Mut7-C family protein			
-	677125	677703	579	FIG030357: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_677691_677125		hypothetical protein		CDS	conserved hypothetical protein			
+	677710	677925	216	FIG00820371: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_677710_677925		Ribbon-helix-helix protein, copG family.		CDS	antitoxin VapB26		vapB26	
+	677922	678329	408	FIG00821513: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_677922_678329		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC26			
-	678389	679075	687	Lipoprotein LpqN	peg	gi|57116681|ref|NC_000962.2|_679075_678389		Probable lipoprotein LpqN.		CDS	putative lipoLpqN family protein			
+	678926	679127	202							hypothetical protein			
+	679229	681862	2634	"Alpha-1,2-mannosidase"	peg	gi|57116681|ref|NC_000962.2|_679229_681862		alpha-1,2-mannosidase, putative		CDS	alpha-1,2-mannosidase family protein			
-	681885	684272	2388	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_684272_681885		Predicted integral membrane protein		CDS	TIGR00374 family protein			
+	684410	685132	723	"Transcriptional regulator, GntR family"	peg	gi|57116681|ref|NC_000962.2|_684410_685132		transcriptional regulator, GntR family		CDS	iron dependent repressor, N-terminal DNA binding domain protein			
+	685129	685926	798	Conserved hypothetical integral membrane protein YrbE1A	peg	gi|57116681|ref|NC_000962.2|_685129_685926		ABC-type transport system involved in resistance to organic solvents, permease component		CDS	permease family protein			
+	685928	686815	888	Conserved hypothetical integral membrane protein YrbE1B	peg	gi|57116681|ref|NC_000962.2|_685928_686815		ABC-type transport system involved in resistance to organic solvents, permease component		CDS	permease family protein			
+	686821	688035	1215	MCE-family protein Mce1A	peg	gi|57116681|ref|NC_000962.2|_686821_688035		virulence factor Mce family protein		CDS	mce related family protein			
+	688032	688859	828	MCE-family protein Mce1B	peg	gi|57116681|ref|NC_000962.2|_688032_688859		virulence factor Mce family protein		CDS	mce related family protein			
+	688808	689062	255	MCE-family protein Mce1B	peg	gi|57116681|ref|NC_000962.2|_688883_689062		hypothetical protein		CDS	MCE-family Mce1B domain protein		mce1B	
+	689059	690504	1446	MCE-family protein Mce1C	peg	gi|57116681|ref|NC_000962.2|_689059_690504		virulence factor Mce family protein		CDS	mce related family protein			
+	690501	692027	1527	MCE-family protein Mce1D	peg	gi|57116681|ref|NC_000962.2|_690501_692027		virulence factor Mce family protein		CDS	mce related family protein			
+	692036	693232	1197	MCE-family lipoprotein LprK (MCE-family lipoprotein Mce1e)	peg	gi|57116681|ref|NC_000962.2|_692114_693232		virulence factor Mce family protein		CDS	mce related family protein			
+	693192	694787	1596	MCE-family protein Mce1F	peg	gi|57116681|ref|NC_000962.2|_693192_694787		virulence factor Mce family protein		CDS	mce related family protein			
-	694839	695234	396	FIG00822047: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_695231_694839		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC4			
-	695228	695485	258	FIG044579: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_695485_695228		prevent-host-death family protein		CDS	antitoxin VapB4		vapB4	
-	695668	696903	1236	ATPase	peg	gi|57116681|ref|NC_000962.2|_696903_695668		Predicted ATPase (AAA+ superfamily)		CDS	conserved hypothetical protein			
-	697154	697567	414	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_697567_697154		PIN domain.		CDS	putative ribonuclease VapC27			
+	697020	697193	174	FIG00822992: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_697020_697193		hypothetical protein		CDS	conserved hypothetical protein			
-	697564	697800	237	FIG00820380: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_697800_697564		looped-hinge helix DNA binding domain, AbrB family		CDS	antitoxin VapB27		vapB27	
-	697904	698410	507	PROBABLE TWO COMPONENT SENSOR KINASE [SECOND PART]	peg	gi|57116681|ref|NC_000962.2|_698410_697904		Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.		CDS	sensor histidine kinase component HK1	2.7.13.3		
-	698524	699054	531	Integral membrane sensor signal transduction histidine kinase	peg	gi|57116681|ref|NC_000962.2|_699054_698524		His Kinase A (phospho-acceptor) domain./HAMP domain.	2.7.13.3	CDS	sensor histidine kinase component HK2	2.7.13.3		
-	699038	699742	705	Two component DNA binding Transcriptional regulatory protein TcrA	peg	gi|57116681|ref|NC_000962.2|_699742_699038		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory protein tcrA		tcrA	
+	699856	700167	312	POSSIBLE EXPORTED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_699856_700167		hypothetical protein		CDS	peptidase propeptide and YPEB domain protein			
+	700263	701189	927	PROBABLE CONSERVED LIPOPROTEIN LPQO	peg	gi|57116681|ref|NC_000962.2|_700263_701189		Domain of Unknown Function (DUF1259).		CDS	conserved hypothetical protein			
+	701430	702014	585	Resolvase	peg	gi|57116681|ref|NC_000962.2|_701430_702014		Predicted site-specific integrase-resolvase		CDS	resolvase, N terminal domain protein			
+	702016	702759	744	Transposase	peg	gi|57116681|ref|NC_000962.2|_702016_702759		Transposase and inactivated derivatives		CDS	putative transposase family protein			
+	702729	703199	471	FIG00822227: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_702729_703199		hypothetical protein		CDS	conserved hypothetical protein			
+	703244	703489	246	FIG036639: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_703244_703489		Uncharacterized protein conserved in bacteria		CDS	antitoxin VapB28		vapB28	
+	703486	703887	402	FIG00821655: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_703486_703887		Uncharacterized protein conserved in bacteria		CDS	putative ribonuclease VapC28			
+	703985	704212	228	FIG00821340: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_703985_704212					conserved hypothetical protein			
-	704475	704672	198	FIG00822720: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_704672_704475		hypothetical protein		CDS	hypothetical protein			
-	704752	705909	1158	FIG00821968: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_705909_704752		hypothetical protein		CDS	conserved hypothetical protein			
-	705961	706182	222	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_706182_705961		hypothetical protein		CDS	hypothetical protein			
+	706381	706929	549	FIG00820918: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_706381_706929		hypothetical protein		CDS	conserved hypothetical protein			
-	706948	709515	2568	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_709515_706948		SEC-C motif.		CDS	SEC-C motif family protein			
+	709599	710348	750	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_709599_710348		hypothetical protein		CDS	conserved hypothetical protein			
+	710348	710587	240	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_710348_710587		hypothetical protein		CDS	putative membrane protein			
+	710782	711009	228	FIG00820212: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_710782_711009		hypothetical protein		CDS	putative antitoxin VapB29			
+	711006	711407	402	FIG037359: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_711006_711407		Predicted nucleic acid-binding protein, contains PIN domain		CDS	mycobacterium tuberculosis PIN domain protein			
+	711536	712231	696	Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	peg	gi|57116681|ref|NC_000962.2|_711536_712231		Galactose-1-phosphate uridylyltransferase	2.7.7.12	CDS	galactose-1-phosphate uridyl transferase, N-terminal domain protein			
+	712249	712719	471	Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	peg	gi|57116681|ref|NC_000962.2|_712249_712719		Galactose-1-phosphate uridylyltransferase	2.7.7.12	CDS	galactose-1-phosphate uridyl transferase, C-terminal domain protein			
+	712716	713807	1092	Galactokinase (EC 2.7.1.6)	peg	gi|57116681|ref|NC_000962.2|_712716_713807		galactokinase (EC 2.7.1.6)	2.7.1.6	CDS	galactokinase	2.7.1.6	galK	
+	714202	715266	1065	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_714451_715266		hypothetical protein		CDS	putative membrane protein			
+	715370	716317	948	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_715370_716317		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
+	716410	716664	255	FIG00821357: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_716410_716664		Uncharacterized protein conserved in bacteria		CDS	antitoxin VapB30		vapB30	
+	716664	717059	396	FIG00825799: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_716664_717059		Uncharacterized protein conserved in bacteria		CDS	putative ribonuclease VapC30			
-	717153	717893	741	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_717893_717153		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	718025	718285	261	FIG00822638: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_718034_718285		prevent-host-death family protein		CDS	putative antitoxin VapB5			
+	718282	718689	408	FIG00821685: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_718282_718689		Predicted nucleic acid-binding protein, contains PIN domain		CDS	ribonuclease VapC5	3.1.-.-	vapC5	
-	718761	719912	1152	FIG00822946: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_719912_718761		Uncharacterized protein conserved in bacteria		CDS	FIST N domain protein			
-	720005	721732	1728	Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)	peg	gi|57116681|ref|NC_000962.2|_721732_720005		DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5)	3.1.11.5	CDS	exodeoxyribonuclease V, alpha subunit	3.1.11.5	recD	
-	721729	725013	3285	Exodeoxyribonuclease V beta chain (EC 3.1.11.5)	peg	gi|57116681|ref|NC_000962.2|_725013_721729		DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5)	3.1.11.5	CDS	exodeoxyribonuclease V, beta subunit	3.1.11.5	recB	
-	725013	728306	3294	Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)	peg	gi|57116681|ref|NC_000962.2|_728306_725013		DNA helicase/exodeoxyribonuclease V, gamma subunit (EC 3.1.11.5)	3.1.11.5	CDS	exodeoxyribonuclease V, gamma subunit	3.1.11.5	recC	
-	728583	729278	696	Enoyl-CoA hydratase	peg	gi|57116681|ref|NC_000962.2|_729278_728583		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase, EchA3		echA3	
-	729327	730187	861	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_730166_729327		hypothetical protein		CDS	conserved hypothetical protein			
-	730320	731033	714	FIG00822416: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_731033_730320		Zn-dependent hydrolases, including glyoxylases	3.1.2.6	CDS	metallo-beta-lactamase superfamily protein			
+	731152	731364	213	FIG00822280: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_731152_731364		Transcription regulator of the Arc/MetJ class		CDS	conserved hypothetical protein			
+	731712	731879	168	"LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-dependent"	peg	gi|57116681|ref|NC_000962.2|_731712_731879		LSU ribosomal protein L33P		CDS	ribosomal protein L33		rpmG	
+	731930	732406	477	FIG00995223: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_731930_732406		Acyl dehydratase		CDS	metal-binding domain of MaoC dehydratase family protein			
+	732375	732821	447	(3R)-hydroxyacyl-ACP dehydratase subunit HadB	peg	gi|57116681|ref|NC_000962.2|_732375_732821		Acyl dehydratase		CDS	maoC like domain protein			
+	732825	733325	501	FIG00820537: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_732825_733325		Acyl dehydratase		CDS	metal-binding domain of MaoC dehydratase family protein			
+	733737	734222	486	Preprotein translocase subunit SecE (TC 3.A.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_733737_734222		protein translocase subunit secE/sec61 gamma		CDS	preprotein translocase, SecE subunit		secE	
+	734254	734970	717	Transcription antitermination protein NusG	peg	gi|57116681|ref|NC_000962.2|_734254_734970		transcription antitermination protein nusG		CDS	transcription termination/antitermination factor NusG		nusG	
+	735022	735450	429	LSU ribosomal protein L11p (L12e)	peg	gi|57116681|ref|NC_000962.2|_735022_735450		LSU ribosomal protein L11P		CDS	ribosomal protein L11		rplK	
+	735517	736224	708	LSU ribosomal protein L1p (L10Ae)	peg	gi|57116681|ref|NC_000962.2|_735517_736224		LSU ribosomal protein L1P		CDS	ribosomal protein L1		rplA	
-	736298	737194	897	Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	peg	gi|57116681|ref|NC_000962.2|_737194_736298		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	hydroxymycolate synthase MmaA4	2.1.1.-	mmaA4	
-	737268	738161	894	Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	peg	gi|57116681|ref|NC_000962.2|_738161_737268		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	cyclopropane mycolic acid synthase MmaA2	2.1.1.79	mmaA2	
-	738297	739217	921	Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	peg	gi|57116681|ref|NC_000962.2|_739160_738297		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	cyclopropane mycolic acid synthase MmaA2	2.1.1.79	mmaA2	
-	739327	740187	861	Methoxy mycolic acid synthase 1 MmaA1 (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_740187_739327		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	cyclopropane mycolic acid synthase 1	2.1.1.79	cmaA1	
-	740234	741139	906	Carboxyl esterase	peg	gi|57116681|ref|NC_000962.2|_741139_740234		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
-	741151	742617	1467	Ubiquinone biosynthesis monooxygenase UbiB	peg	gi|57116681|ref|NC_000962.2|_742497_741151		Predicted unusual protein kinase		CDS	phosphotransferase enzyme family protein			
+	742635	746366	3732	Alpha-mannosidase (EC 3.2.1.24)	peg	gi|57116681|ref|NC_000962.2|_742635_746366		Alpha-mannosidase		CDS	NPCBM-associated, NEW3 domain of alpha-galactosidase family protein			
+	746363	747037	675	POSSIBLE MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE FABD2 (MCT) (EC 2.3.1.39)	peg	gi|57116681|ref|NC_000962.2|_746363_747037		hypothetical protein	2.3.1.39	CDS	putative malonyl CoA-acyl carrier protein transacylase, FabD2			
+	747037	747945	909	Sugar kinase	peg	gi|57116681|ref|NC_000962.2|_747037_747945		glucokinase (EC 2.7.1.2)	2.7.1.2	CDS	ROK family protein			
+	748276	748812	537	LSU ribosomal protein L10p (P0)	peg	gi|57116681|ref|NC_000962.2|_748276_748812		LSU ribosomal protein L10P		CDS	50S ribosomal protein L10		rplJ	
-	749234	749929	696	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_749929_749234		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	748849	749241	393	LSU ribosomal protein L7/L12 (P1/P2)	peg	gi|57116681|ref|NC_000962.2|_748849_749241		LSU ribosomal protein L12P		CDS	ribosomal protein L7/L12		rplL	
+	750000	751505	1506	"""Lignostilbene-alpha,beta-dioxygenase and related enzymes"""	peg	gi|57116681|ref|NC_000962.2|_750000_751505		Lignostilbene-alpha,beta-dioxygenase and related enzymes		CDS	retinal pigment epithelial membrane family protein			
+	751586	752596	1011	Methionine ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_751586_752596		ABC-type transport system involved in resistance to organic solvents, ATPase component		CDS	ABC transporter family protein			
-	752984	753235	252	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_753226_752984		PIN domain.		CDS	PIN domain protein			
-	753232	753399	168	FIG00820147: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_753399_753232					putative ribonuclease VapC6			
-	753462	753617	156	FIG00821248: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_753617_753462		Uncharacterized protein conserved in bacteria (DUF2191).		CDS	conserved hypothetical protein			
-	753693	754409	717	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_754409_753693		Predicted metal-dependent membrane protease		CDS	CAAX protease self-immunity family protein			
-	754685	754993	309	"Death on curing protein, Doc toxin"	peg	gi|57116681|ref|NC_000962.2|_754918_754685		Growth inhibitor	3.1.-	CDS	pemK-like family protein			
-	754980	755231	252	"Prevent host death protein, Phd antitoxin"	peg	gi|57116681|ref|NC_000962.2|_755231_754980		hypothetical protein		CDS	putative antitoxin MazE2			
-	755335	755772	438	FIG00822666: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_755766_755335		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
-	755769	756023	255	"""DNA-binding protein, CopG family"""	peg	gi|57116681|ref|NC_000962.2|_756017_755769		hypothetical protein		CDS				
+	756137	758500	2364	Arylsulfatase (EC 3.1.6.1)	peg	gi|57116681|ref|NC_000962.2|_756137_758500		Arylsulfatase A and related enzymes	3.1.6.1	CDS	sulfatase family protein			
+	758532	758804	273				hypothetical protein		CDS				
+	758801	759139	339	FIG00821129: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_758801_759139		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
+	759294	759524	231	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_759411_759524		hypothetical protein		CDS	hypothetical protein			
+	759807	763325	3519	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	peg	gi|57116681|ref|NC_000962.2|_760035_763325		DNA-directed RNA polymerase subunit beta (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase, beta subunit	2.7.7.6	rpoB	
+	763370	767320	3951	DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	peg	gi|57116681|ref|NC_000962.2|_763370_767320		DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase, beta' subunit	2.7.7.6	rpoC	
-	767684	769597	1914	Alkaline ceramidase	peg	gi|57116681|ref|NC_000962.2|_769540_767684		Neutral/alkaline non-lysosomal ceramidase.		CDS	neutral ceramidase	3.5.1.23		
+	769792	770550	759	Endonuclease IV (EC 3.1.21.2)	peg	gi|57116681|ref|NC_000962.2|_769792_770550		Endonuclease IV (EC 3.1.21.-)	3.1.21.2	CDS	xylose isomerase-like TIM barrel family protein			
+	770582	771424	843	Lipoprotein LpqP	peg	gi|57116681|ref|NC_000962.2|_770681_771424		Poly(3-hydroxybutyrate) depolymerase		CDS	esterase PHB depolymerase family protein			
+	771484	773112	1629	Acyl-CoA dehydrogenase (EC 1.3.99.3)	peg	gi|57116681|ref|NC_000962.2|_771484_773112		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	773123	774061	939	Enoyl-CoA hydratase	peg	gi|57116681|ref|NC_000962.2|_773123_774061		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase			
+	774064	774786	723	Phenylacetic acid degradation operon negative regulatory protein PaaX	peg	gi|57116681|ref|NC_000962.2|_774100_774786		transcriptional regulator, PaaX family		CDS	paaX-like family protein			
+	774783	775574	792	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_774783_775574		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase, EchA5		echA5	
-	775586	778480	2895	Transmembrane transport protein MmpL5	peg	gi|57116681|ref|NC_000962.2|_778402_775586		Transport protein		CDS	transport family protein			
-	778477	778905	429	"membrane protein, MmpS family"	peg	gi|57116681|ref|NC_000962.2|_778905_778477		Mycobacterium membrane protein.		CDS	mycobacterium membrane family protein			
+	778990	779487	498	FIG00822074: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_778990_779487		hypothetical protein		CDS	putative regulatory protein MarR			
-	779543	780040	498	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_779806_779543		Protein of unknown function (DUF3060).		CDS	conserved hypothetical protein			
-	780042	780416	375	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_780416_780042		Protein of unknown function (DUF3060).		CDS	conserved hypothetical protein			
+	779805	780077	273	FIG00820507: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_779805_780077					hypothetical protein			
+	780655	781311	657	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_780721_781311		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	781560	781934	375	SSU ribosomal protein S12p (S23e)	peg	gi|57116681|ref|NC_000962.2|_781560_781934		SSU ribosomal protein S12P		CDS	ribosomal protein S12		rpsL	
+	781934	782404	471	SSU ribosomal protein S7p (S5e)	peg	gi|57116681|ref|NC_000962.2|_781934_782404		SSU ribosomal protein S7P		CDS	ribosomal protein S7		rpsG	
+	782485	784590	2106	Translation elongation factor G	peg	gi|57116681|ref|NC_000962.2|_782485_784590		translation elongation factor 2 (EF-2/EF-G)		CDS	translation elongation factor G		fusA	
+	784821	786011	1191	Translation elongation factor Tu	peg	gi|57116681|ref|NC_000962.2|_784821_786011		translation elongation factor 1A (EF-1A/EF-Tu)		CDS	translation elongation factor Tu		tuf	
+	786149	786946	798	FIG025093: Probable membrane protein	peg	gi|57116681|ref|NC_000962.2|_786149_786946		Short C-terminal domain.		CDS	short C-terminal domain protein			
+	787099	787926	828	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|57116681|ref|NC_000962.2|_787099_787926		oxidoreductase, SDR family		CDS	putative short-chain type dehydrogenase/reductase MSMEG_6031			
-	789157	789411	255	FIG00822343: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_789411_789157					glyoxalase/bleomycin resistance /dioxygenase domain protein			
+	787940	789160	1221	Ferredoxin reductase	peg	gi|57116681|ref|NC_000962.2|_787952_789160		NAD(P)H-nitrite reductase		CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	789172	789420	249				hypothetical protein		CDS				
-	790024	791073	1050	FIG00821437: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_791073_790024		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	791070	791666	597	Mycofactocin system transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_791666_791070		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	791658	791846	189	Mycofactocin precursor	peg	gi|57116681|ref|NC_000962.2|_791658_791846		mycofactocin precursor		CDS	mycofactocin		mftA	
+	791831	792160	330	Mycofactocin system small protein	peg	gi|57116681|ref|NC_000962.2|_791831_792160		mycofactocin system RPExFGAL protein		CDS	conserved hypothetical protein			
+	792157	793332	1176	Mycofactocin radical SAM maturase	peg	gi|57116681|ref|NC_000962.2|_792157_793332		mycofactocin radical SAM maturase		CDS	mycofactocin radical SAM maturase		mftC	
+	793335	794525	1191	Mycofactocin system heme/flavin dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_793335_794525		heme/flavin dehydrogenase, mycofactocin system	1.1.2.3	CDS	FMN-dependent dehydrogenase family protein			
+	794805	795470	666	Cyclic amid hydrolase in mycofactocin cluster	peg	gi|57116681|ref|NC_000962.2|_794805_795470		creatinine amidohydrolase family protein, mycofactocin system		CDS	creatinine amidohydrolase family protein			
+	795519	796931	1413	Mycofactocin system glycosyltransferase	peg	gi|57116681|ref|NC_000962.2|_795519_796931		mycofactocin system glycosyltransferase		CDS	glycosyl transferase 2 family protein			
+	796933	798372	1440	Dehydrogenase in mycofactocin cluster	peg	gi|57116681|ref|NC_000962.2|_796933_798372		dehydrogenase, Rv0697 family		CDS	GMC oxidoreductase family protein			
-	799160	799792	633	FIG055611: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_799792_799160					conserved hypothetical protein			
+	799264	800019	756				hypothetical protein		CDS				
-	800104	800334	231	FIG00820963: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_800334_800104					conserved hypothetical protein			
+	800487	800792	306	SSU ribosomal protein S10p (S20e)	peg	gi|57116681|ref|NC_000962.2|_800487_800792		SSU ribosomal protein S10P		CDS	ribosomal protein S10		rpsJ	
+	800809	801462	654	LSU ribosomal protein L3p (L3e)	peg	gi|57116681|ref|NC_000962.2|_800809_801462		LSU ribosomal protein L3P		CDS	50S ribosomal protein L3		rplC	
+	801462	802133	672	LSU ribosomal protein L4p (L1e)	peg	gi|57116681|ref|NC_000962.2|_801462_802133		LSU ribosomal protein L4P		CDS	50S ribosomal protein L4		rplD	
+	802133	802435	303	LSU ribosomal protein L23p (L23Ae)	peg	gi|57116681|ref|NC_000962.2|_802133_802435		LSU ribosomal protein L23P		CDS	50S ribosomal protein L23		rplW	
+	802528	803370	843	LSU ribosomal protein L2p (L8e)	peg	gi|57116681|ref|NC_000962.2|_802528_803370		LSU ribosomal protein L2P		CDS	ribosomal protein L2		rplB	
+	803411	803692	282	SSU ribosomal protein S19p (S15e)	peg	gi|57116681|ref|NC_000962.2|_803411_803692		SSU ribosomal protein S19P		CDS	ribosomal protein S19		rpsS	
+	803689	804282	594	LSU ribosomal protein L22p (L17e)	peg	gi|57116681|ref|NC_000962.2|_803689_804282		LSU ribosomal protein L22P		CDS	ribosomal protein L22		rplV	
+	804282	805106	825	SSU ribosomal protein S3p (S3e)	peg	gi|57116681|ref|NC_000962.2|_804282_805106		SSU ribosomal protein S3P		CDS	ribosomal protein S3		rpsC	
+	805110	805526	417	LSU ribosomal protein L16p (L10e)	peg	gi|57116681|ref|NC_000962.2|_805110_805526		LSU ribosomal protein L16P		CDS	ribosomal protein L16		rplP	
+	805526	805759	234	LSU ribosomal protein L29p (L35e)	peg	gi|57116681|ref|NC_000962.2|_805526_805759		LSU ribosomal protein L29P		CDS	ribosomal protein L29		rpmC	
+	805759	806166	408	SSU ribosomal protein S17p (S11e)	peg	gi|57116681|ref|NC_000962.2|_805798_806166		SSU ribosomal protein S17P		CDS	30S ribosomal protein S17		rpsQ	
+	806335	808698	2364	Arylsulfatase (EC 3.1.6.1)	peg	gi|57116681|ref|NC_000962.2|_806335_808698		Arylsulfatase A and related enzymes	3.1.6.1	CDS	sulfatase family protein			
+	808746	809645	900	Sulfatase modifying factor 1 precursor (C-alpha-formyglycine- generating enzyme 1)	peg	gi|57116681|ref|NC_000962.2|_808746_809645		Uncharacterized conserved protein		CDS	formylglycine-generating sulfatase enzyme family protein			
+	810027	810887	861	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_810048_810887		hypothetical protein		CDS	putative conserved transmembrane protein			
+	811373	811741	369	LSU ribosomal protein L14p (L23e)	peg	gi|57116681|ref|NC_000962.2|_811373_811741		LSU ribosomal protein L14P		CDS	ribosomal protein L14		rplN	
+	811742	812059	318	LSU ribosomal protein L24p (L26e)	peg	gi|57116681|ref|NC_000962.2|_811742_812059		LSU ribosomal protein L24P		CDS	ribosomal protein L24		rplX	
+	812059	812622	564	LSU ribosomal protein L5p (L11e)	peg	gi|57116681|ref|NC_000962.2|_812059_812622		LSU ribosomal protein L5P		CDS	50S ribosomal protein L5		rplE	
+	812627	812812	186	"SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-dependent"	peg	gi|57116681|ref|NC_000962.2|_812627_812812		SSU ribosomal protein S14P		CDS	30S ribosomal protein S14 type Z		rpsZ	
+	812976	813374	399	SSU ribosomal protein S8p (S15Ae)	peg	gi|57116681|ref|NC_000962.2|_812976_813374		SSU ribosomal protein S8P		CDS	30S ribosomal protein S8		rpsH	
+	813398	813937	540	LSU ribosomal protein L6p (L9e)	peg	gi|57116681|ref|NC_000962.2|_813398_813937		LSU ribosomal protein L6P		CDS	ribosomal protein L6		rplF	
+	813940	814308	369	LSU ribosomal protein L18p (L5e)	peg	gi|57116681|ref|NC_000962.2|_813940_814308		LSU ribosomal protein L18P		CDS	ribosomal protein L18		rplR	
+	814328	814990	663	SSU ribosomal protein S5p (S2e)	peg	gi|57116681|ref|NC_000962.2|_814328_814990		SSU ribosomal protein S5P		CDS	ribosomal protein S5		rpsE	
+	814993	815190	198	LSU ribosomal protein L30p (L7e)	peg	gi|57116681|ref|NC_000962.2|_814993_815190		LSU ribosomal protein L30P		CDS	ribosomal protein L30		rpmD	
+	815190	815630	441	LSU ribosomal protein L15p (L27Ae)	peg	gi|57116681|ref|NC_000962.2|_815190_815630		LSU ribosomal protein L15P		CDS	ribosomal protein L15		rplO	
+	815663	817534	1872	Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase)	peg	gi|57116681|ref|NC_000962.2|_815726_817534		signal peptide peptidase SppA, 67K type	3.4.21.-	CDS	signal peptide peptidase SppA, 67K type	3.4.-.-	sppA	
-	817539	818444	906	FIG00819993: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_818444_817539		methyltransferase, putative, TIGR00027 family		CDS	methyltransferase, TIGR00027 family protein	2.1.1.-		
-	818537	819640	1104	FIG00824343: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_819640_818537		methyltransferase, putative, TIGR00027 family		CDS	methyltransferase, TIGR00027 family protein	2.1.1.-		
-	819843	820499	657	L-fuculose phosphate aldolase (EC 4.1.2.17)	peg	gi|57116681|ref|NC_000962.2|_820499_819843		Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	4.1.2.17	CDS	class II Aldolase and Adducin N-terminal domain protein			
-	820496	821452	957	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	peg	gi|57116681|ref|NC_000962.2|_821440_820496		Phosphoglycerate dehydrogenase and related dehydrogenases	1.1.1.95	CDS	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein			
+	821507	822853	1347	Putative xylulose kinase (EC 2.7.1.17)	peg	gi|57116681|ref|NC_000962.2|_821507_822853		Sugar (pentulose and hexulose) kinases	2.7.1.17	CDS	carbohydrate kinase, FGGY family			
+	822866	823594	729	FIG00820922: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_822866_823594		Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit		CDS	acetyltransferase domain protein			
-	823683	824639	957	FIG00819993: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_824639_823683		methyltransferase, putative, TIGR00027 family		CDS	methyltransferase, TIGR00027 family protein	2.1.1.-		
+	824800	826125	1326	Preprotein translocase secY subunit (TC 3.A.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_824800_826125		protein translocase subunit secY/sec61 alpha		CDS	preprotein translocase, SecY subunit		secY	
+	826122	826667	546	Adenylate kinase (EC 2.7.4.3)	peg	gi|57116681|ref|NC_000962.2|_826173_826667		Adenylate kinase (EC 2.7.4.3)	2.7.4.3	CDS	adenylate kinase	2.7.4.3	adk	
+	826670	827470	801	Methionine aminopeptidase (EC 3.4.11.18)	peg	gi|57116681|ref|NC_000962.2|_826706_827470		methionine aminopeptidase, type I (EC 3.4.11.18)	3.4.11.18	CDS	methionine aminopeptidase, type I	3.4.11.18	map	
+	827543	828076	534	RNA polymerase sigma-70 factor	peg	gi|57116681|ref|NC_000962.2|_827543_828076		RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma factor, sigma-70 family protein			
+	828140	828892	753	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_828140_828892		Predicted transmembrane transcriptional regulator (anti-sigma factor)		CDS	zinc-finger family protein			
+	828947	829159	213	COG0028: Thiamine pyrophosphate-requiring enzymes	peg	gi|57116681|ref|NC_000962.2|_829016_829159					thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein			
+	829135	829704	570	"Transcriptional regulator, MarR family"	peg	gi|57116681|ref|NC_000962.2|_829207_829704		Transcriptional regulators		CDS	marR family protein			
+	829743	829913	171	FIG00828360: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_829743_829913					hypothetical protein			
+	830062	830610	549	FIG00822571: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_830062_830610		TIGR03086 family protein		CDS	conserved hypothetical protein			
+	830858	831661	804	FIG00822485: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_830858_831661		Domain of unknown function (DUF4226).		CDS	conserved hypothetical protein			
+	831695	832303	609	FIG00821514: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_831902_832303		hypothetical protein		CDS	conserved hypothetical protein			
+	832534	832848	315	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_832534_832848		Transposase and inactivated derivatives		CDS	transposase family protein			
+	832990	833508	519	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_832990_833508		PE family.		CDS	PE family protein			
-	833886	834443	558	FIG00821670: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_834380_833886		hypothetical protein		CDS	conserved hypothetical protein			
-	834440	834979	540	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_834979_834440		DNA binding domain, excisionase family		CDS	DNA binding , excisionase family domain protein			
+	835701	838052	2352	PE-PGRS virulence associated protein	peg	gi|57116681|ref|NC_000962.2|_835701_838052		Membrane protein involved in colicin uptake		CDS	PE family protein			
+	838451	840856	2406	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_838451_840856		PE family.		CDS	PE family protein			
+	840938	841204	267	FIG00820737: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_840938_841204		Ribbon-helix-helix protein, copG family.		CDS	antitoxin VapB31		vapB31	
+	841228	841656	429	FIG00820914: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_841228_841656		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC31			
+	842009	842278	270	FIG00823268: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_842045_842278		hypothetical protein		CDS	conserved hypothetical protein			
-	842347	843231	885	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	peg	gi|57116681|ref|NC_000962.2|_843231_842347		3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	1.1.1.31	CDS	3-hydroxyisobutyrate dehydrogenase	1.1.1.31	mmsB	
-	843242	844414	1173	PROBABLE ACYL-COA DEHYDROGENASE FADE9( EC:1.3.99.- )	peg	gi|57116681|ref|NC_000962.2|_844414_843242		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
-	844421	845953	1533	Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	peg	gi|57116681|ref|NC_000962.2|_845953_844421		methylmalonic acid semialdehyde dehydrogenase	1.2.1.18, 1.2.1.27	CDS	methylmalonate-semialdehyde dehydrogenase	1.2.1.27	mmsA	
+	846159	847913	1755	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_846168_847913		Fructose-2,6-bisphosphatase		CDS	histidine phosphatase super family protein			
-	848103	850043	1941	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_850043_848103		PPE-repeat proteins		CDS	PPE family protein			
-	850342	850512	171	PUTATIVE TRANSPOSASE (FRAGMENT)	peg	gi|57116681|ref|NC_000962.2|_850512_850342		Helix-turn-helix domain.		CDS	transposase family protein			
-	850741	851466	726	FIG00820010: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_851466_850741		hypothetical protein		CDS	conserved hypothetical protein			
+	851629	852351	723	DNA-binding response regulator	peg	gi|57116681|ref|NC_000962.2|_851680_852351		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	response regulator			
-	853825	854226	402	HIT family protein	peg	gi|57116681|ref|NC_000962.2|_854226_853825		Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases		CDS	HIT domain protein			
+	852396	853853	1458	PhoR	peg	gi|57116681|ref|NC_000962.2|_852396_853853		Signal transduction histidine kinase	2.7.13.3	CDS	HAMP domain protein			
-	854267	854686	420	"steroid isomerase, putative"	peg	gi|57116681|ref|NC_000962.2|_854686_854267		Nuclear transport factor 2 (NTF2) domain.	5.3.3.1	CDS	snoaL-like domain protein			
-	854699	855826	1128	Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|57116681|ref|NC_000962.2|_855826_854699		oxidoreductase, Rxyl_3153 family	1.1.1.284, 1.1.1.1	CDS	NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family protein	1.1.99.36		
-	855925	856470	546	FIG00994119: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_856470_855925		hypothetical protein		CDS	conserved hypothetical protein			
-	856473	856679	207	Ferredoxin	peg	gi|57116681|ref|NC_000962.2|_856679_856473		Ferredoxin		CDS	4Fe-4S single cluster domain protein			
-	856682	858037	1356	Cytochrome P450 51	peg	gi|57116681|ref|NC_000962.2|_858037_856682		Cytochrome P450	1.14.13.70	CDS	lanosterol 14-alpha demethylase	1.14.13.70	cyp51	
-	858037	858864	828	"oxidoreductase, short-chain dehydrogenase/reductase family"	peg	gi|57116681|ref|NC_000962.2|_858864_858037		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
-	858864	860072	1209	putative cytochrome P450 hydroxylase	peg	gi|57116681|ref|NC_000962.2|_860072_858864		Cytochrome P450		CDS	cytochrome P450 family protein			
-	860069	860710	642	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_860710_860069		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	860912	862381	1470	Aldehyde dehydrogenase (EC 1.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_860912_862381		NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	aldehyde dehydrogenase family protein			
+	862412	863158	747	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|57116681|ref|NC_000962.2|_862412_863158		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	conserved hypothetical protein			
+	863256	864143	888	PROBABLE DEHYDROGENASE/REDUCTASE( EC:1.1.1.- )	peg	gi|57116681|ref|NC_000962.2|_863256_864143		3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases		CDS	putative oxidoreductase			
+	864143	864574	432	4-carboxymuconolactone decarboxylase (EC 4.1.1.44)	peg	gi|57116681|ref|NC_000962.2|_864143_864574		Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit	4.1.1.44	CDS	carboxymuconolactone decarboxylase family protein			
-	865851	867434	1584	Gamma-glutamyltranspeptidase (EC 2.3.2.2)	peg	gi|57116681|ref|NC_000962.2|_867365_865851		gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03	2.3.2.2	CDS	gamma-glutamyltransferase	2.3.2.2	ggt	
+	864586	865854	1269	Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	peg	gi|57116681|ref|NC_000962.2|_864586_865854		phosphoribosylamine--glycine ligase (EC 6.3.4.13)	6.3.4.13	CDS	phosphoribosylamine--glycine ligase	6.3.4.13	purD	
-	867440	868339	900	Gamma-glutamyltranspeptidase (EC 2.3.2.2)	peg	gi|57116681|ref|NC_000962.2|_868339_867440		Predicted esterase		CDS	esterase family protein			
-	868984	869763	780	FIG00820278: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_869763_868984		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	868413	869030	618	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_868458_869030		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	870008	871426	1419	Adenylosuccinate lyase (EC 4.3.2.2)	peg	gi|57116681|ref|NC_000962.2|_870008_871426		adenylosuccinate lyase	4.3.2.2	CDS	adenylosuccinate lyase	4.3.2.2	purB	
-	872672	873292	621	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_873292_872672		hypothetical protein		CDS	putative transmembrane protein			
+	871413	872675	1263	Cytochrome P450 126A3	peg	gi|57116681|ref|NC_000962.2|_871413_872675		Cytochrome P450		CDS	cytochrome P450 family protein			
+	873343	874236	894	Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	peg	gi|57116681|ref|NC_000962.2|_873343_874236		phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	6.3.2.6	CDS	phosphoribosylaminoimidazolesuccinocarboxamide synthase	6.3.2.6	purC	
+	874233	874943	711	Protease II (EC 3.4.21.83)	peg	gi|57116681|ref|NC_000962.2|_874266_874943		Protease II	3.4.21.83	CDS	prolyl oligopeptidase, N-terminal beta-propeller domain protein			
-	876342	876503	162	FIG00821840: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_876503_876342		hypothetical protein		CDS	conserved hypothetical protein			
+	874882	876390	1509	Protease II (EC 3.4.21.83)	peg	gi|57116681|ref|NC_000962.2|_874960_876390		Protease II		CDS	prolyl oligopeptidase family protein			
-	876818	878455	1638	Inner membrane component of tripartite multidrug resistance system	peg	gi|57116681|ref|NC_000962.2|_878455_876818		drug resistance transporter, EmrB/QacA subfamily		CDS	H+ antiporter-2 family protein			
+	878620	879324	705	FIG00998196: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_878620_879324		Predicted deacetylase		CDS	conserved hypothetical protein			
+	879340	881040	1701	Fumarate/succinate/L-aspartate dehydrogenases	peg	gi|57116681|ref|NC_000962.2|_879361_881040		Predicted oxidoreductase		CDS	ksdD-like steroid dehydrogenase MSMEG_5835	1.3.99.-		
-	881075	881713	639	FIG00998332: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_881593_881075		Predicted Zn-dependent hydrolases of the beta-lactamase fold		CDS	beta-lactamase superfamily domain protein			
+	881576	882418	843	FIG00820729: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_881576_882418		hypothetical protein		CDS	conserved hypothetical protein			
+	882524	882763	240	"Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3)"	peg	gi|57116681|ref|NC_000962.2|_882524_882763		phosphoribosylformylglycinamidine synthase, purS protein	6.3.5.3	CDS	phosphoribosylformylglycinamidine synthase, purS protein		purS	
+	882760	883434	675	"Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)"	peg	gi|57116681|ref|NC_000962.2|_882760_883434		phosphoribosylformylglycinamidine synthase subunit I (EC 6.3.5.3)	6.3.5.3	CDS	phosphoribosylformylglycinamidine synthase I	6.3.5.3	purQ	
-	883451	883924	474	FIG00820357: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_883924_883451		hypothetical protein		CDS	conserved hypothetical protein			
-	884072	884800	729	"Transglutaminase-like enzymes, putative cysteine proteases"	peg	gi|57116681|ref|NC_000962.2|_884800_884072		Transglutaminase-like enzymes, putative cysteine proteases		CDS	transglutaminase-like superfamily protein			
-	884797	885840	1044	"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"	peg	gi|57116681|ref|NC_000962.2|_885840_884797		probable F420-dependent oxidoreductase, Rv2161c family		CDS	putative F420-dependent oxidoreductase, Rv2161c family domain protein			
-	885837	886646	810	"PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase"	peg	gi|57116681|ref|NC_000962.2|_886646_885837		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	886719	887024	306	FIG00823434: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_886800_887024		Uncharacterized conserved protein		CDS	antibiotic biosynthesis monooxygenase family protein			
-	887137	888636	1500	"PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase"	peg	gi|57116681|ref|NC_000962.2|_888636_887137		Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	1.8.1.4	CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	889072	889398	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_889072_889398		Transposase and inactivated derivatives		CDS	transposase family protein			
+	889449	890333	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_889449_890333		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	891472	892269	798	Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers	peg	gi|57116681|ref|NC_000962.2|_892269_891472		Uncharacterized protein, linocin/CFP29 homolog		CDS	linocin-M18	3.4.-.-	lin	
+	890388	891482	1095	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_890388_891482		Transposase and inactivated derivatives		CDS	transposase IS116/IS110/IS902 family protein			
-	892266	893273	1008	"Predicted dye-decolorizing peroxidase (DyP), encapsulated subgroup"	peg	gi|57116681|ref|NC_000962.2|_893273_892266		Dyp-type peroxidase family		CDS	conserved hypothetical protein			
+	893318	894619	1302	Aspartyl aminopeptidase	peg	gi|57116681|ref|NC_000962.2|_893318_894619		Aspartyl aminopeptidase	3.4.11.-	CDS	aminopeptidase I zinc metalloprotease family protein			
-	894972	895628	657	FIG00821487: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_895628_894972		Acetyltransferases, including N-acetylases of ribosomal proteins		CDS	acetyltransferase domain protein			
+	894631	894978	348	glyoxalase family protein superfamily	peg	gi|57116681|ref|NC_000962.2|_894649_894978		Predicted enzyme related to lactoylglutathione lyase		CDS	glyoxalase-like domain protein			
+	895781	898084	2304	"Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)"	peg	gi|57116681|ref|NC_000962.2|_895781_898084		phosphoribosylformylglycinamidine synthase subunit II (EC 6.3.5.3)	6.3.5.3	CDS	phosphoribosylformylglycinamidine synthase II	6.3.5.3	purL	
+	898081	898710	630	"3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)"	peg	gi|57116681|ref|NC_000962.2|_898081_898710		CAAX protease self-immunity.		CDS	CAAX protease self-immunity family protein			
-	899732	901330	1599	probable UDP-glucose-4-epimerase	peg	gi|57116681|ref|NC_000962.2|_901330_899732		hypothetical protein	5.1.3.2	CDS	conserved hypothetical protein			
+	898831	899787	957				Predicted phosphohydrolases		CDS				
+	901635	902024	390	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_901635_902024		hypothetical protein		CDS	conserved hypothetical protein			
+	902111	903694	1584	Amidophosphoribosyltransferase (EC 2.4.2.14)	peg	gi|57116681|ref|NC_000962.2|_902111_903694		amidophosphoribosyltransferase (EC 2.4.2.14)	2.4.2.14	CDS	amidophosphoribosyltransferase	2.4.2.14	purF	
+	903725	904819	1095	Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	peg	gi|57116681|ref|NC_000962.2|_903725_904819		phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	6.3.3.1	CDS	phosphoribosylformylglycinamidine cyclo-ligase	6.3.3.1	purM	
-	904905	905087	183	FIG00821405: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_905087_904905		Protein of unknown function (DUF3073).		CDS	conserved hypothetical protein			
-	905234	906340	1107	Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	peg	gi|57116681|ref|NC_000962.2|_906340_905234		folate-binding protein YgfZ		CDS	glycine cleavage T-C-terminal barrel domain protein			
+	906405	907292	888	Aminodeoxychorismate lyase (EC 4.1.3.38)	peg	gi|57116681|ref|NC_000962.2|_906423_907292		Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	4.1.3.38	CDS	aminotransferase class IV family protein			
-	907338	908018	681	DUF1794	peg	gi|57116681|ref|NC_000962.2|_908018_907338		Domain of unknown function (DUF1794).		CDS	conserved hypothetical protein			
-	908181	908483	303	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_908453_908181		Protein of unknown function (DUF1416).		CDS	conserved hypothetical protein			
-	908485	909318	834	"Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)"	peg	gi|57116681|ref|NC_000962.2|_909318_908485		thiosulfate sulfurtransferase (EC 2.8.1.1)	2.8.1.2, 2.8.1.1	CDS	putative thiosulfate sulfurtransferase			
-	909611	910033	423	Thioredoxin	peg	gi|57116681|ref|NC_000962.2|_910033_909611		Thiol-disulfide isomerase and thioredoxins		CDS	thioredoxin family protein			
-	910030	910842	813	FIG00821015: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_910836_910030		Protein of unknown function (DUF2993).		CDS	conserved hypothetical protein			
+	910972	911739	768	GlnR-family transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_910972_911739		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory , C terminal family protein			
+	911736	912683	948	"Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD"	peg	gi|57116681|ref|NC_000962.2|_911736_912683		mycothiol synthase	2.3.1.189	CDS	mycothiol synthase	2.3.1.189	mshD	
+	912726	913502	777	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	peg	gi|57116681|ref|NC_000962.2|_912726_913502		phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1)	3.6.3.27	CDS	phosphate ABC transporter, ATP-binding protein	3.6.3.27	pstB	
-	913558	914199	642	Phosphate transport system regulatory protein PhoU	peg	gi|57116681|ref|NC_000962.2|_914199_913558		phosphate transport system regulatory protein PhoU		CDS	phosphate transport system regulatory protein PhoU		phoU	
-	914257	916311	2055	"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)"	peg	gi|57116681|ref|NC_000962.2|_916311_914257		transcriptional attenuator, LytR family		CDS	cell envelope-related function transcriptional attenuator common domain protein			
-	916477	917646	1170	tRNA dihydrouridine synthase B (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_917646_916477		putative TIM-barrel protein, nifR3 family		CDS	TIM-barrel , nifR3 family protein			
-	917734	918750	1017	Fatty acid desaturase occurring in virulence cluster	peg	gi|57116681|ref|NC_000962.2|_918750_917734		Fatty acid desaturase.		CDS	putative acyl-[acyl-carrier-protein] desaturase desA1			
-	918912	919553	642	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_919553_918912		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	919607	920689	1083	FIG00820092: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_919751_920689		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	920741	921133	393	"transcriptional regulator, ArsR family"	peg	gi|57116681|ref|NC_000962.2|_921085_920741		transcriptional regulator, ArsR family		CDS	bacterial regulatory , arsR family protein			
-	921191	921613	423	Deaminase	peg	gi|57116681|ref|NC_000962.2|_921613_921191		Cytosine/adenosine deaminases		CDS	cytidine and deoxycytidylate deaminase zinc-binding region family protein			
+	921575	921865	291	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_921575_921865					putative transposase DNA-binding domain protein			
+	921970	922875	906	O-Methyltransferase involved in polyketide biosynthesis	peg	gi|57116681|ref|NC_000962.2|_921970_922875		methyltransferase, putative, TIGR00027 family		CDS	methyltransferase, TIGR00027 family protein	2.1.1.-		
-	922894	923709	816	FIG00821728: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_923709_922894		hypothetical protein		CDS	TIGR04255 family protein			
+	924951	925364	414	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_924951_925364		PE family.		CDS	PE family protein			
+	925361	927610	2250	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_925361_927610		hypothetical protein		CDS	pE-PGRS FAMILY PROTEIN		PE_PGRS13	
+	927629	927808	180	FIG00823878: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_927629_927808					putative predicted protein			
-	927837	930485	2649	PE_PGRS	peg	gi|57116681|ref|NC_000962.2|_930485_927837		Ca2+-dependent lipid-binding protein, contains C2 domain		CDS	PE family protein			
-	931578	931991	414				hypothetical protein		CDS				
+	930953	931597	645	POSSIBLE LIPOPROTEIN LPQQ	peg	gi|57116681|ref|NC_000962.2|_930953_931597		PknH-like extracellular domain.		CDS	pknH-like extracellular domain protein			
-	932279	933025	747	FIG00820906: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_933025_932279		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	933003	934031	1029	COG4861: Uncharacterized protein conserved in bacteria	peg	gi|57116681|ref|NC_000962.2|_934031_933003		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	934293	934481	189	FIG00822787: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_934481_934293					putative peptidase S15			
-	934500	934712	213	FIG00821659: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_934712_934500					putative predicted protein			
+	934879	935490	612	D-alanyl-D-alanine dipeptidase	peg	gi|57116681|ref|NC_000962.2|_934879_935490		D-alanyl-D-alanine dipeptidase	3.4.13.22	CDS	D-ala-D-ala dipeptidase family protein			
+	935544	936389	846	Methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_935544_936389		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
-	936457	937317	861	Proline iminopeptidase (EC 3.4.11.5)	peg	gi|57116681|ref|NC_000962.2|_937317_936457		tricorn interacting aminopeptidase F1. Serine peptidase. MEROPS family S33	3.4.11.5	CDS	proline-specific peptidase family protein			
+	937593	937835	243	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_937593_937835					putative membrane protein			
+	938076	939404	1329	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_938076_939404		Arabinose efflux permease		CDS	major Facilitator Superfamily protein			
+	939388	940392	1005	PROBABLE DEHYDROGENASE	peg	gi|57116681|ref|NC_000962.2|_939388_940392		Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	1.2.4.1	CDS	dehydrogenase E1 component family protein			
-	940456	941106	651	"DNA-binding response regulator, LuxR family"	peg	gi|57116681|ref|NC_000962.2|_941106_940456		two component transcriptional regulator, LuxR family		CDS	putative transcriptional regulatory protein NarL			
+	941190	942467	1278	POSSIBLE TWO COMPONENT SENSOR KINASE	peg	gi|57116681|ref|NC_000962.2|_941190_942467		Signal transduction histidine kinase	2.7.13.3	CDS	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			
-	942680	944194	1515	Multicopper oxidase	peg	gi|57116681|ref|NC_000962.2|_944194_942680		Putative multicopper oxidases		CDS	multicopper oxidase family protein			
+	944319	944735	417	PROBABLE LIPOPROTEIN LPQS	peg	gi|57116681|ref|NC_000962.2|_944319_944735		hypothetical protein		CDS	putative lipoprotein lpqS			
+	944842	946056	1215	putative cysteine synthase A CysK2	peg	gi|57116681|ref|NC_000962.2|_945253_946056		Cysteine synthase	2.5.1.47	CDS	pyridoxal-phosphate dependent enzyme family protein			
+	946056	947315	1260	PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN	peg	gi|57116681|ref|NC_000962.2|_946056_947315		Major Facilitator Superfamily.		CDS	major Facilitator Superfamily protein			
-	947641	948468	828	short chain dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_948468_947641		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
+	947297	947644	348	PUTATIVE TRANSPOSASE (FRAGMENT)	peg	gi|57116681|ref|NC_000962.2|_947297_947644		Helix-turn-helix domain of transposase family ISL3.		CDS	helix-turn-helix domain of transposase ISL3 family protein			
-	948573	948773	201	FIG00826747: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_948773_948573					hypothetical protein			
+	948661	949395	735	POSSIBLE FATTY-ACID-COA LIGASE FADD16 (FATTY-ACID-COA SYNTHETASE) (FATTY-ACID-COA SYNTHASE)	peg	gi|57116681|ref|NC_000962.2|_948757_949395		hypothetical protein		CDS	putative fatty-acid-CoA ligase FadD16			
-	949436	951118	1683	Pyruvate decarboxylase (EC 4.1.1.1); Alpha-keto-acid decarboxylase (EC 4.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_951118_949436		Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes	4.1.1.74	CDS	indole-3-pyruvate decarboxylase	4.1.1.74	ipdC	
+	951183	951626	444	FIG00823411: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_951183_951626		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	951632	952711	1080	Alpha-methylacyl-CoA racemase (EC 5.1.99.4)	peg	gi|57116681|ref|NC_000962.2|_951632_952711		Predicted acyl-CoA transferases/carnitine dehydratase	5.1.99.4	CDS	coA-transferase III family protein			
+	952819	953229	411	FIG00822577: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_952819_953229		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
-	953727	954920	1194	putative aminotransferase	peg	gi|57116681|ref|NC_000962.2|_954920_953727		succinyldiaminopimelate aminotransferase apoenzyme (EC 2.6.1.17)	2.6.1.17	CDS	aminotransferase class-V family protein			
+	953257	953730	474	FIG00822577: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_953278_953730		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	955050	956288	1239	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	peg	gi|57116681|ref|NC_000962.2|_955050_956288		acetyl-CoA acetyltransferases	2.3.1.9	CDS	putative acyltransferase Rv0859			
+	956293	958455	2163	Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	peg	gi|57116681|ref|NC_000962.2|_956293_958455		3-hydroxyacyl-CoA dehydrogenase	1.1.1.35, 4.2.1.17, 5.1.2.3	CDS	enoyl-CoA hydratase/isomerase family protein			
-	958523	960172	1650	DNA repair helicase	peg	gi|57116681|ref|NC_000962.2|_960151_958523		DNA or RNA helicases of superfamily II	3.6.4.12	CDS	type III restriction enzyme, res subunit			
+	960113	960274	162	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_960113_960274								
-	960342	962612	2271	probable DNA-binding protein	peg	gi|57116681|ref|NC_000962.2|_962612_960342		Predicted transcriptional regulator		CDS	helicase conserved C-terminal domain protein			
+	962647	962880	234	FIG057355: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_962680_962880		hypothetical protein		CDS	conserved hypothetical protein			
+	962890	963393	504	Molybdenum cofactor biosynthesis protein MoaC	peg	gi|57116681|ref|NC_000962.2|_962890_963393		molybdenum cofactor biosynthesis protein MoaC		CDS	molybdenum cofactor biosynthesis protein C		moaC	
+	963390	963872	483	Molybdenum cofactor biosynthesis protein MoaB	peg	gi|57116681|ref|NC_000962.2|_963420_963872		molybdopterin adenylyltransferase (EC 2.7.7.75)		CDS	molybdenum cofactor synthesis domain			
+	963869	964294	426	Molybdenum cofactor biosynthesis protein MoaE	peg	gi|57116681|ref|NC_000962.2|_963869_964294		Molybdopterin converting factor, large subunit	2.-	CDS	moaE family protein			
-	964312	965535	1224	FIG00820555: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_965535_964312		Chemotaxis protein histidine kinase and related kinases		CDS	transglycosylase-like domain protein			
-	965983	966261	279	Molybdenum cofactor biosynthesis protein MoaD	peg	gi|57116681|ref|NC_000962.2|_966261_965983		Molybdopterin converting factor, small subunit		CDS	thiS family protein			
-	966265	967347	1083	Molybdenum cofactor biosynthesis protein MoaA	peg	gi|57116681|ref|NC_000962.2|_967347_966265		molybdenum cofactor biosynthesis protein A, bacterial		CDS	molybdenum cofactor biosynthesis protein A		moaA	
-	967344	967733	390	FIG020413: transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_967733_967344		Predicted membrane protein		CDS	conserved hypothetical protein			
+	967898	968305	408	Cold shock protein CspC	peg	gi|57116681|ref|NC_000962.2|_967898_968305		cold-shock DNA-binding protein family		CDS	'Cold-shock' DNA-binding domain protein			
-	968424	970244	1821	PE-PGRS virulence associated protein	peg	gi|57116681|ref|NC_000962.2|_970244_968424		PE family.		CDS	PE family protein			
+	970505	972457	1953	FadE10	peg	gi|57116681|ref|NC_000962.2|_970505_972457		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
-	972546	973706	1161	FIG00822946: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_973706_972546		Uncharacterized protein conserved in bacteria		CDS	FIST N domain protein			
-	973806	974294	489	POSSIBLE CONSERVED EXPORTED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_974294_973806		Protein of unknown function (DUF2771).		CDS	conserved hypothetical protein			
-	974291	975970	1680	possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_975937_974291		Arabinose efflux permease		CDS	major Facilitator Superfamily protein			
+	976075	976863	789	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_976102_976863		Protein of unknown function (DUF3027).		CDS	conserved hypothetical protein			
-	976872	978206	1335	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_978206_976872		PPE-repeat proteins		CDS	PPE family protein			
-	978481	978756	276	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_978756_978481		Protein of unknown function (DUF2530).		CDS	conserved hypothetical protein			
-	978753	979157	405	FIG00824650: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_979157_978753								
+	978934	979365	432	"Transcriptional regulator, MarR family"	peg	gi|57116681|ref|NC_000962.2|_979156_979365		Transcriptional regulators		CDS	marR family protein			
+	979362	980228	867	putative rRNA methylase	peg	gi|57116681|ref|NC_000962.2|_979362_980228		rRNA methylases		CDS	spoU rRNA Methylase family protein			
-	980506	981267	762	FIG00996668: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_981267_980506		Protein of unknown function (DUF3071).		CDS	conserved hypothetical protein			
+	980225	980509	285	PROBABLE TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_980225_980509		Protein of unknown function (DUF2537).		CDS	conserved hypothetical protein			
-	981424	982554	1131	Phosphoserine aminotransferase (EC 2.6.1.52)	peg	gi|57116681|ref|NC_000962.2|_982554_981424		phosphoserine aminotransferase apoenzyme (EC 2.6.1.52)	2.6.1.52	CDS	putative phosphoserine aminotransferase			
+	982762	983784	1023	possible transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_982801_983784		P-aminobenzoate N-oxygenase AurF.		CDS	P-aminobenzoate N-oxygenase AurF family protein			
-	985513	985971	459	"phnB protein, putative"	peg	gi|57116681|ref|NC_000962.2|_985971_985513		Uncharacterized protein conserved in bacteria		CDS	glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein			
+	983803	985530	1728	"Ferredoxin / Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type (EC 1.18.1.2)"	peg	gi|57116681|ref|NC_000962.2|_983863_985530		NADPH-dependent glutamate synthase beta chain and related oxidoreductases	1.18.1.2	CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	987182	988705	1524	PROBABLE EXPORTED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_987203_988705		Uncharacterized protein conserved in bacteria		CDS	endonuclease/Exonuclease/phosphatase family protein			
-	988740	989861	1122	Citrate synthase (si) (EC 2.3.3.1)	peg	gi|57116681|ref|NC_000962.2|_989861_988740		citrate synthase (EC 2.3.3.1)	2.3.3.1	CDS	citrate synthase family protein			
-	989948	992596	2649	"Disease resistance domain-containing protein / Transcriptional regulator, LuxR family"	peg	gi|57116681|ref|NC_000962.2|_992566_989948		Predicted ATPase		CDS	bacterial regulatory s, luxR family protein			
-	992598	993203	606	Adenylyl cyclase class-3/4/guanylyl cyclase	peg	gi|57116681|ref|NC_000962.2|_993203_992598					adenylate and Guanylate cyclase catalytic domain protein			
+	993435	993752	318				hypothetical protein		CDS				
-	995318	996295	978	O-Methyltransferase involved in polyketide biosynthesis	peg	gi|57116681|ref|NC_000962.2|_996295_995318		methyltransferase, putative, TIGR00027 family		CDS	putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			
+	993811	995340	1530	Cyclohexanone monooxygenase (EC 1.14.13.22)	peg	gi|57116681|ref|NC_000962.2|_993853_995340		Predicted flavoprotein involved in K+ transport		CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	996524	997705	1182	Disease resistance domain-containing protein	peg	gi|57116681|ref|NC_000962.2|_996524_997705		Predicted ATPase		CDS	AAA ATPase domain protein			
+	997863	999299	1437	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_997863_999299		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	putative diacyglycerol O-acyltransferase tgs2			
+	999250	1000767	1518	Citrate synthase (si) (EC 2.3.3.1)	peg	gi|57116681|ref|NC_000962.2|_999472_1000767		citrate synthase (EC 2.3.3.1)	2.3.3.1	CDS	citrate (Si)-synthase	2.3.3.1	gltA	
-	1000808	1002415	1608	Beta-carotene ketolase (EC 1.14.-.-)	peg	gi|57116681|ref|NC_000962.2|_1002415_1000808		Phytoene dehydrogenase and related proteins		CDS	FAD binding domain protein			
-	1002441	1002704	264	FIG00821893: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1002704_1002441		Protein of unknown function (DUF2630).		CDS	conserved hypothetical protein			
+	1002812	1003792	981	Outer membrane protein	peg	gi|57116681|ref|NC_000962.2|_1002917_1003792		Outer membrane protein and related peptidoglycan-associated (lipo)proteins		CDS	BON domain protein			
+	1003805	1003957	153	POSSIBLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1003805_1003957		hypothetical protein		CDS	hypothetical protein			
+	1003957	1004484	528	POSSIBLE CONSERVED EXPORTED OR MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1003957_1004484		hypothetical protein		CDS	putative conserved exported/membrane protein			
-	1004501	1005910	1410	Sensor-type histidine kinase prrB (EC 2.7.13.3)	peg	gi|57116681|ref|NC_000962.2|_1005841_1004501		Signal transduction histidine kinase	2.7.13.3	CDS	sensor-type histidine kinase prrB	2.7.13.3	prrB	
-	1005852	1006562	711	DNA-binding response regulator	peg	gi|57116681|ref|NC_000962.2|_1006562_1005852		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory protein prrA		prrA	
-	1006693	1008180	1488	Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) / Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	peg	gi|57116681|ref|NC_000962.2|_1008180_1006693		Acetyl-CoA carboxylase alpha subunit	6.4.1.2	CDS	carboxyl transferase domain protein			
+	1008207	1008938	732	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_1008207_1008938		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	putative enoyl-CoA hydratase echA6			
+	1008944	1010062	1119	Outer membrane protein romA	peg	gi|57116681|ref|NC_000962.2|_1008944_1010062		Predicted Zn-dependent hydrolases of the beta-lactamase fold		CDS	beta-lactamase superfamily domain protein			
+	1010313	1011734	1422	Beta-lactamase (EC 3.5.2.6)	peg	gi|57116681|ref|NC_000962.2|_1010313_1011734		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
+	1011731	1014124	2394	"Cation-transporting ATPase, E1-E2 family"	peg	gi|57116681|ref|NC_000962.2|_1011731_1014124		ATPase, P-type (transporting), HAD superfamily, subfamily IC	3.6.3.-	CDS	HAD ATPase, P-type, IC family protein	3.6.3.-		
+	1014397	1014555	159	FIG00820576: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1014400_1014555		hypothetical protein		CDS	conserved hypothetical protein			
+	1014681	1014860	180	FIG00821394: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1014681_1014860		MT0933-like antitoxin protein.		CDS	antitoxin Rv0909/MT0933			
+	1014866	1015300	435	FIG00820677: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1014866_1015300		Uncharacterized conserved protein		CDS	toxin Rv0910/MT0934			
+	1015398	1016171	774	Putative hydroxylase	peg	gi|57116681|ref|NC_000962.2|_1015398_1016171		Predicted enzyme related to lactoylglutathione lyase		CDS	glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein			
+	1016212	1016685	474	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1016266_1016685		hypothetical protein		CDS	putative membrane protein			
-	1016820	1017050	231	FIG00823217: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1017050_1016820		hypothetical protein		CDS	conserved hypothetical protein			
-	1017217	1018725	1509	"Lignostilbene-alpha,beta-dioxygenase and related enzymes"	peg	gi|57116681|ref|NC_000962.2|_1018725_1017217		Lignostilbene-alpha,beta-dioxygenase and related enzymes		CDS	retinal pigment epithelial membrane family protein			
-	1018727	1019965	1239	3-ketoacyl-CoA thiolase (EC 2.3.1.16)	peg	gi|57116681|ref|NC_000962.2|_1019965_1018727		Acetyl-CoA acetyltransferase	2.3.1.9	CDS	thiolase, C-terminal domain protein			
-	1020058	1021329	1272	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1021329_1020058		PPE-repeat proteins		CDS	PPE family protein			
-	1021344	1021643	300	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1021529_1021344		PE family.		CDS	PE family protein			
+	1022087	1023868	1782	High-affinity choline uptake protein BetT	peg	gi|57116681|ref|NC_000962.2|_1022087_1023868		choline/carnitine/betaine transport		CDS	transporter, betaine/carnitine/choline transporter family protein			
+	1023865	1024122	258	FIG00821313: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1023868_1024122		hypothetical protein		CDS	hypothetical protein			
+	1024232	1024687	456	FIG032766: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1024400_1024687		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1024684	1025184	501	FIG001353: Acetyltransferase	peg	gi|57116681|ref|NC_000962.2|_1024684_1025184		Predicted acetyltransferase		CDS	acetyltransferase family protein			
-	1025497	1026816	1320	Probable transposase for the insertion element IS2606	peg	gi|57116681|ref|NC_000962.2|_1026816_1025497		Transposase and inactivated derivatives		CDS	transposase, Mutator family protein			
+	1027104	1027685	582	POSSIBLE RESOLVASE	peg	gi|57116681|ref|NC_000962.2|_1027137_1027685		Predicted site-specific integrase-resolvase		CDS	resolvase, N terminal domain protein			
+	1027685	1029337	1653	Transposase	peg	gi|57116681|ref|NC_000962.2|_1027697_1029337		Transposase and inactivated derivatives		CDS	putative transposase family protein			
-	1029513	1030577	1065	FIG00823130: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1030577_1029513		Phage-related replication protein		CDS	conserved hypothetical protein			
-	1030578	1031864	1287	Manganese transport protein MntH	peg	gi|57116681|ref|NC_000962.2|_1031864_1030578		NRAMP (natural resistance-associated macrophage protein) metal ion transporters		CDS	metal ion transporter, metal ion family protein			
-	1031896	1032633	738	BRAMP	peg	gi|57116681|ref|NC_000962.2|_1032633_1031896		NADPH-dependent FMN reductase.		CDS	NADPH-dependent FMN reductase family protein			
-	1032710	1033786	1077	FIG00820002: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1033786_1032710		Uncharacterized conserved protein related to dihydrodipicolinate reductase		CDS	dihydrodipicolinate reductase, family protein			
-	1033840	1034631	792	7-alpha-hydroxysteroid dehydrogenase (EC 1.1.1.159)	peg	gi|57116681|ref|NC_000962.2|_1034631_1033840		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.159	CDS	short chain dehydrogenase family protein			
+	1034903	1036015	1113	"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)"	peg	gi|57116681|ref|NC_000962.2|_1034903_1036015		phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, phosphate-binding protein PstS		pstS	
+	1036028	1037002	975	Phosphate transport system permease protein PstC (TC 3.A.1.7.1)	peg	gi|57116681|ref|NC_000962.2|_1036028_1037002		phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, permease protein PstC		pstC	
-	1037920	1039914	1995	Serine/threonine-protein kinase pknD (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_1039914_1037920		NHL repeat./Protein kinase domain.	2.7.11.1	CDS	serine/threonine-protein kinase pknD	2.7.11.1	pknD	
+	1036999	1037925	927	Phosphate transport system permease protein PstA (TC 3.A.1.7.1)	peg	gi|57116681|ref|NC_000962.2|_1036999_1037925		phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, permease protein PstA		pstA	
-	1039936	1041048	1113	"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)"	peg	gi|57116681|ref|NC_000962.2|_1041048_1039936		phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, phosphate-binding protein PstS		pstS	
+	1041264	1042094	831	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	peg	gi|57116681|ref|NC_000962.2|_1041264_1042094		phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1)	3.6.3.27	CDS	phosphate ABC transporter, ATP-binding protein	3.6.3.27	pstB	
+	1042115	1043239	1125	"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)"	peg	gi|57116681|ref|NC_000962.2|_1042115_1043239		phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, phosphate-binding protein PstS		pstS	
+	1043299	1044315	1017	Phosphate transport system permease protein PstC (TC 3.A.1.7.1)	peg	gi|57116681|ref|NC_000962.2|_1043299_1044315		phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, permease protein PstC		pstC	
-	1045199	1046074	876	Ku domain protein	peg	gi|57116681|ref|NC_000962.2|_1046074_1045199		DNA end-binding protein Ku		CDS	ku protein			
+	1044317	1045222	906	Phosphate transport system permease protein PstA (TC 3.A.1.7.1)	peg	gi|57116681|ref|NC_000962.2|_1044317_1045222		phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, permease protein PstA		pstA	
+	1046136	1048415	2280	"ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD"	peg	gi|57116681|ref|NC_000962.2|_1046136_1048415		ATP-dependent DNA ligase LigD ligase module/ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module	6.5.1.1	CDS	DNA ligase D		ligD	
+	1048412	1050346	1935	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1048412_1050346		2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)		CDS	metallo-beta-lactamase superfamily protein			
-	1050593	1051459	867	Hydride transferase 1 (Fragment)	peg	gi|57116681|ref|NC_000962.2|_1051459_1050593		probable F420-dependent oxidoreductase, Rv2161c family		CDS	putative F420-dependent oxidoreductase, Rv2161c family domain protein			
-	1051544	1052308	765	FIG00823384: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1052308_1051544		STAS domain.		CDS	STAS domain protein			
-	1052696	1053736	1041	Cyclohexanone monooxygenase (EC 1.14.13.22)	peg	gi|57116681|ref|NC_000962.2|_1053736_1052696		hypothetical protein		CDS	conserved hypothetical protein			
+	1053759	1054241	483	Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	peg	gi|57116681|ref|NC_000962.2|_1053759_1054241		Formamidopyrimidine-DNA glycosylase	4.2.99.18, 3.2.2.23	CDS	formamidopyrimidine-DNA glycosylase H2TH domain protein			
+	1054247	1055008	762	"Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)"	peg	gi|57116681|ref|NC_000962.2|_1054259_1055008		Short-chain dehydrogenases of various substrate specificities		CDS	short chain dehydrogenase family protein			
-	1055024	1056685	1662	Glucose-6-phosphate isomerase (EC 5.3.1.9)	peg	gi|57116681|ref|NC_000962.2|_1056685_1055024		glucose-6-phosphate isomerase (EC 5.3.1.9)	5.3.1.9	CDS	glucose-6-phosphate isomerase	5.3.1.9	pgi	
-	1056786	1056974	189	FIG00820067: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1056974_1056786					secreted antigen 85-C FbpC_2 domain protein		fbpC_2	
+	1057447	1057641	195	FIG00820095: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1057447_1057641					hypothetical protein			
-	1057646	1057918	273	Chorismate mutase I (EC 5.4.99.5)	peg	gi|57116681|ref|NC_000962.2|_1057918_1057646		chorismate mutase (EC 5.4.99.5)	5.4.99.5	CDS	conserved hypothetical protein			
+	1058260	1060575	2316	ATP-dependent DNA helicase UvrD/PcrA	peg	gi|57116681|ref|NC_000962.2|_1058260_1060575		ATP-dependent DNA helicase PcrA (EC 3.6.1.-)	3.6.4.12	CDS	ATP-dependent DNA helicase PcrA	3.6.4.12	pcrA	
-	1060656	1061687	1032	Phage peptidoglycan binding endopeptidase	peg	gi|57116681|ref|NC_000962.2|_1061687_1060656		Membrane proteins related to metalloendopeptidases		CDS	peptidase M23 family protein			
+	1061964	1063127	1164	Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	peg	gi|57116681|ref|NC_000962.2|_1061964_1063127		succinyl-CoA synthetase (ADP-forming) beta subunit (EC 6.2.1.5)	6.2.1.5	CDS	succinyl-CoA ligase [ADP-forming] subunit beta	6.2.1.5	sucC	
+	1063140	1064051	912	Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	peg	gi|57116681|ref|NC_000962.2|_1063140_1064051		succinyl-CoA synthetase (ADP-forming) alpha subunit (EC 6.2.1.5)	6.2.1.5	CDS	succinate-CoA ligase, alpha subunit	6.2.1.-	sucD	
-	1064114	1064962	849	Hydride transferase 1 (Fragment)	peg	gi|57116681|ref|NC_000962.2|_1064962_1064114		probable F420-dependent oxidoreductase, Rv2161c family		CDS	putative F420-dependent oxidoreductase, Rv2161c family domain protein			
+	1065127	1066038	912	antigen 34 kDa	peg	gi|57116681|ref|NC_000962.2|_1065127_1066038		hypothetical protein		CDS	conserved hypothetical protein			
+	1066087	1067445	1359	PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1066168_1067445		hypothetical protein		CDS	putative membrane protein			
+	1067561	1068208	648	Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	peg	gi|57116681|ref|NC_000962.2|_1067633_1068208		phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent	2.1.2.2	CDS	phosphoribosylglycinamide formyltransferase	2.1.2.2	purN	
+	1068205	1069776	1572	IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	peg	gi|57116681|ref|NC_000962.2|_1068205_1069776		IMP cyclohydrolase (EC 3.5.4.10)/phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	2.1.2.3, 3.5.4.10	CDS	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	2.1.2.3	purH	
+	1069880	1071262	1383	"Magnesium chelatase, subunit ChlI (EC 6.6.1.1)"	peg	gi|57116681|ref|NC_000962.2|_1069880_1071262		Mg-chelatase subunit ChlI	6.6.1.1	CDS	AAA domain family protein			
+	1071255	1073273	2019	FIG019045: long form Mg-chelase associated protein with vWA domain	peg	gi|57116681|ref|NC_000962.2|_1071255_1073273		Uncharacterized protein with a von Willebrand factor type A (vWA) domain		CDS	von Willebrand factor type A domain protein			
+	1073327	1073548	222	Antitoxin 1	peg	gi|57116681|ref|NC_000962.2|_1073327_1073548		hypothetical protein		CDS	putative antitoxin VapB9			
+	1073545	1073928	384	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_1073545_1073928		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
+	1074074	1074421	348	PROBABLE INTEGRAL MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1074080_1074421		hypothetical protein		CDS	putative membrane protein			
-	1074440	1075114	675	"lipoprotein, putative"	peg	gi|57116681|ref|NC_000962.2|_1075114_1074440		hypothetical protein		CDS	conserved hypothetical protein			
-	1075297	1076259	963	Putative secreted protein	peg	gi|57116681|ref|NC_000962.2|_1076097_1075297		Alpha/beta hydrolase.		CDS	alpha/beta hydrolase family protein			
-	1076196	1076678	483	FIG00821697: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1076678_1076196					conserved hypothetical protein			
-	1076778	1077197	420	FIG00820456: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1077137_1076778		hypothetical protein		CDS	conserved hypothetical protein			
-	1077233	1077835	603	FIG00821093: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1077835_1077233		Domain of unknown function (DUF1707).		CDS	conserved hypothetical protein			
+	1077975	1078334	360	FIG00821819: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1077975_1078334		Uncharacterized protein conserved in bacteria		CDS	metal-sensitive transcriptional repressor family protein			
+	1078391	1078687	297	FIG00822349: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1078391_1078687		Protein of unknown function (DUF1490).		CDS	conserved hypothetical protein			
+	1078677	1081055	2379	"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)"	peg	gi|57116681|ref|NC_000962.2|_1078677_1081055		copper-(or silver)-translocating P-type ATPase	3.6.3.-	CDS	copper-translocating P-type ATPase	3.6.3.4		
+	1081052	1081684	633	probable integral membrane protein	peg	gi|57116681|ref|NC_000962.2|_1081052_1081684		hypothetical protein		CDS	putative membrane protein			
-	1081775	1082584	810	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	peg	gi|57116681|ref|NC_000962.2|_1082584_1081775		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase			
-	1082584	1083750	1167	PROBABLE ACYL-COA DEHYDROGENASE FADE12( EC:1.3.99.- )	peg	gi|57116681|ref|NC_000962.2|_1083750_1082584		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase fadE12	1.3.99.-	fadE12	
-	1083747	1085756	2010	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	peg	gi|57116681|ref|NC_000962.2|_1085756_1083747		Acetyl/propionyl-CoA carboxylase, alpha subunit	6.4.1.3	CDS	carbamoyl-phosphate synthase L chain, ATP binding domain protein			
-	1085756	1087351	1596	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	peg	gi|57116681|ref|NC_000962.2|_1087351_1085756		Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)		CDS	carboxyl transferase domain protein			
-	1087348	1088496	1149	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	peg	gi|57116681|ref|NC_000962.2|_1088496_1087348		Acyl-CoA dehydrogenases	1.3.99.3	CDS	putative acyl-CoA dehydrogenase			
-	1088493	1090175	1683	expressed protein	peg	gi|57116681|ref|NC_000962.2|_1090175_1088493		Protein of unknown function (DUF1446).		CDS	conserved hypothetical protein			
+	1090373	1093144	2772	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1090373_1093144		PE family.		CDS	PE family protein			
-	1093361	1094401	1041	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_1094401_1093361		40-residue YVTN family beta-propeller repeat		CDS	PE family protein			
+	1094886	1095059	174	LSU ribosomal protein L32p	peg	gi|57116681|ref|NC_000962.2|_1094886_1095059		LSU ribosomal protein L32P		CDS	ribosomal protein L32		rpmF	
-	1095078	1096496	1419	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_1096496_1095078		40-residue YVTN family beta-propeller repeat		CDS	kelch motif family protein			
+	1096816	1097508	693	Mycobacterial persistence regulator MprA (Two component response transcriptional regulatory protein)	peg	gi|57116681|ref|NC_000962.2|_1096822_1097508		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	response regulator		mprA	
+	1097508	1099022	1515	Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	peg	gi|57116681|ref|NC_000962.2|_1097580_1099022		Signal transduction histidine kinase	2.7.13.3	CDS	signal transduction histidine-protein kinase/phosphatase mprB	3.1.3.-	mprB	
+	1099066	1100460	1395	Heat shock protein HtrA	peg	gi|57116681|ref|NC_000962.2|_1099366_1100460		Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain	3.4.21.-	CDS	trypsin family protein			
+	1100460	1101005	546	Molybdenum cofactor biosynthesis protein MoaB	peg	gi|57116681|ref|NC_000962.2|_1100460_1101005		molybdenum cofactor synthesis domain		CDS	pterin-4-alpha-carbinolamine dehydratase MoaB2		moaB2	
-	1101025	1101480	456	Large-conductance mechanosensitive channel	peg	gi|57116681|ref|NC_000962.2|_1101480_1101025		large conductance mechanosensitive channel protein		CDS	large conductance mechanosensitive channel protein		mscL	
+	1101803	1102549	747	AttE component of AttEFGH ABC transport system	peg	gi|57116681|ref|NC_000962.2|_1101803_1102549		ABC-type antimicrobial peptide transport system, ATPase component		CDS	ABC transporter family protein			
+	1102542	1105109	2568	AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system	peg	gi|57116681|ref|NC_000962.2|_1102542_1105109		ABC-type transport system, involved in lipoprotein release, permease component		CDS	ftsX-like permease family protein			
+	1105116	1106276	1161	AttH component of AttEFGH ABC transport system	peg	gi|57116681|ref|NC_000962.2|_1105116_1106276		Predicted secreted hydrolase		CDS	hydroxyneurosporene synthase family protein			
-	1106405	1107382	978	"Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29)"	peg	gi|57116681|ref|NC_000962.2|_1107382_1106405		Geranylgeranyl pyrophosphate synthase	2.5.1.30	CDS	geranylgeranyl pyrophosphate synthase	2.5.1.-	ispB	
-	1107443	1108099	657	Heat shock protein 22.5 (Hsp22.5)	peg	gi|57116681|ref|NC_000962.2|_1108099_1107443		Flagellar basal body P-ring biosynthesis protein		CDS	SAF-like family protein			
-	1108172	1108504	333	Type I antifreeze protein	peg	gi|57116681|ref|NC_000962.2|_1108504_1108172		putative regulatory protein, FmdB family		CDS				
+	1108154	1108349	196							hypothetical protein			
-	1108578	1109303	726	5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	peg	gi|57116681|ref|NC_000962.2|_1109303_1108578		5,10-methenyltetrahydrofolate synthetase		CDS	5-formyltetrahydrofolate cyclo-ligase	6.3.3.2		
+	1109272	1110192	921	UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	peg	gi|57116681|ref|NC_000962.2|_1109272_1110192		UDP-glucose pyrophosphorylase (EC 2.7.7.9)	2.7.7.9	CDS	UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE	2.7.7.9	galU1	
+	1110269	1111549	1281	Molybdopterin biosynthesis protein MoeA	peg	gi|57116681|ref|NC_000962.2|_1110278_1111549		molybdenum cofactor synthesis domain		CDS	molybdenum cofactor synthesis domain protein			
+	1111612	1112223	612	Ribosomal-protein-S5p-alanine acetyltransferase	peg	gi|57116681|ref|NC_000962.2|_1111612_1112223		Acetyltransferases, including N-acetylases of ribosomal proteins	2.3.1.128	CDS	acetyltransferase family protein			
+	1112384	1113460	1077	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1112384_1113460		hypothetical protein		CDS	putative transmembrane protein			
+	1113861	1114112	252	FIG00822908: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1113861_1114112		hypothetical protein		CDS	conserved hypothetical protein			
-	1114173	1114382	210	FIG00821497: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1114382_1114173		hypothetical protein		CDS	methyltransferase domain protein			
-	1114386	1114706	321	methyltransferase	peg	gi|57116681|ref|NC_000962.2|_1114706_1114386					methyltransferase domain protein			
+	1114748	1115749	1002	cyclic nucleotide-binding protein	peg	gi|57116681|ref|NC_000962.2|_1114799_1115749		Cyclic nucleotide-binding domain./Acetyltransferase (GNAT) domain.		CDS	acetyltransferase family protein			
+	1115767	1116525	759	FIG00820856: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1115767_1116525		hypothetical protein		CDS	conserved hypothetical protein			
-	1116531	1117148	618	Alkylated DNA repair protein AlkB	peg	gi|57116681|ref|NC_000962.2|_1117148_1116531		DNA-N1-methyladenine dioxygenase (EC 1.14.11.-)		CDS	2OG-Fe(II) oxygenase superfamily protein			
+	1117185	1118393	1209	Arginine deiminase (EC 3.5.3.6)	peg	gi|57116681|ref|NC_000962.2|_1117185_1118393		arginine deiminase (EC 3.5.3.6)	3.5.3.6	CDS	arginine deiminase	3.5.3.6	arcA	
-	1118428	1119996	1569	CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1119939_1118428		Dolichyl-phosphate-mannose--protein O-mannosyl transferase		CDS	dolichyl-phosphate-mannose-mannosyltransferase family protein			
+	1120022	1120879	858	rRNA small subunit methyltransferase I	peg	gi|57116681|ref|NC_000962.2|_1120022_1120879		probable S-adenosylmethionine-dependent methyltransferase, YraL family	2.1.1.198	CDS	tetrapyrrole (Corrin/Porphyrin) Methylases family protein			
-	1120889	1122112	1224	elastin	peg	gi|57116681|ref|NC_000962.2|_1122097_1120889		hypothetical protein		CDS	putative membrane protein			
-	1122222	1123508	1287	"Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)"	peg	gi|57116681|ref|NC_000962.2|_1123508_1122222		aminodeoxychorismate synthase, component I, bacterial clade	2.6.1.85	CDS	aminodeoxychorismate synthase, component I	2.6.1.85	pabB	
+	1123831	1125417	1587	FIG00820568: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1123831_1125417		hypothetical protein		CDS	conserved hypothetical protein			
-	1125444	1127003	1560	Methionyl-tRNA synthetase (EC 6.1.1.10)	peg	gi|57116681|ref|NC_000962.2|_1127003_1125444		methionyl-tRNA synthetase (EC 6.1.1.10)	6.1.1.10	CDS	methionyl-tRNA synthetase	6.1.1.10	metG	
+	1127089	1127883	795	Putative deoxyribonuclease YcfH	peg	gi|57116681|ref|NC_000962.2|_1127089_1127883		hydrolase, TatD family	3.1.21.-	CDS	hydrolase, TatD family protein			
+	1128091	1129179	1089	Cell wall-binding protein	peg	gi|57116681|ref|NC_000962.2|_1128091_1129179		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1129152	1130105	954	SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182)	peg	gi|57116681|ref|NC_000962.2|_1129152_1130105		dimethyladenosine transferase (EC 2.1.1.-)	2.1.1.182	CDS	dimethyladenosine transferase	2.1.1.-	ksgA	
+	1130155	1131111	957	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	peg	gi|57116681|ref|NC_000962.2|_1130155_1131111		4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	2.7.1.148	CDS	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	2.7.1.148	ispE	
+	1131625	1133259	1635	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1131625_1133259		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	putative ligase Rv1013			
-	1133333	1133908	576	Peptidyl-tRNA hydrolase (EC 3.1.1.29)	peg	gi|57116681|ref|NC_000962.2|_1133908_1133333		peptidyl-tRNA hydrolase (EC 3.1.1.29)	3.1.1.29	CDS	peptidyl-tRNA hydrolase	3.1.1.29	pth	
-	1133921	1134568	648	LSU ribosomal protein L25p	peg	gi|57116681|ref|NC_000962.2|_1134568_1133921		LSU ribosomal protein L25P		CDS	ribosomal protein L25, Ctc-form			
-	1134785	1135435	651	"lipoprotein, putative"	peg	gi|57116681|ref|NC_000962.2|_1135300_1134785		Probable lipoprotein LpqN.		CDS	putative lipoLpqN family protein			
+	1135308	1135490	183	FIG00825050: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1135308_1135490					hypothetical protein			
-	1135501	1136481	981	Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	peg	gi|57116681|ref|NC_000962.2|_1136481_1135501		ribose-phosphate pyrophosphokinase	2.7.6.1	CDS	ribose-phosphate pyrophosphokinase	2.7.6.1	prs	
-	1136573	1138060	1488	N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	peg	gi|57116681|ref|NC_000962.2|_1138060_1136573		UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)/glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	2.3.1.157, 2.7.7.23	CDS	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	2.7.7.23	glmU	
+	1138148	1138303	156	FIG00825223: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1138160_1138303					hypothetical protein			
+	1138315	1138908	594	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_1138315_1138908		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	1138967	1142671	3705	Transcription-repair coupling factor	peg	gi|57116681|ref|NC_000962.2|_1138967_1142671		transcription-repair coupling factor	3.6.4.-	CDS	transcription-repair coupling factor	3.6.1.-	mfd	
+	1142668	1143648	981	Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)	peg	gi|57116681|ref|NC_000962.2|_1142668_1143648		Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain	3.6.1.19	CDS	nucleoside triphosphate pyrophosphohydrolase	3.6.1.8	mazG	
+	1143736	1144467	732	FIG00997322: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1143736_1144467		Transglycosylase SLT domain.		CDS	transglycosylase SLT domain protein			
+	1144564	1145853	1290	Enolase (EC 4.2.1.11)	peg	gi|57116681|ref|NC_000962.2|_1144564_1145853		enolase (EC 4.2.1.11)	4.2.1.11	CDS	phosphopyruvate hydratase	4.2.1.11	eno	
+	1145858	1146544	687	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_1145858_1146544		Septum formation initiator		CDS	septum formation initiator family protein			
+	1146537	1147028	492	FIG004853: possible toxin to DivIC	peg	gi|57116681|ref|NC_000962.2|_1146561_1147028		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1147019	1147978	960	Exopolyphosphatase (EC 3.6.1.11)	peg	gi|57116681|ref|NC_000962.2|_1147019_1147978		Exopolyphosphatase	3.6.1.11, 3.6.1.40	CDS	ppx/GppA phosphatase family protein			
-	1148427	1149107	681	DNA-binding response regulator KdpE	peg	gi|57116681|ref|NC_000962.2|_1149107_1148427		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory , C terminal family protein			
+	1148218	1148430	213	FIG00821068: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1148218_1148430								
-	1149104	1151686	2583	Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	peg	gi|57116681|ref|NC_000962.2|_1151686_1149104		Osmosensitive K+ channel histidine kinase	2.7.13.3	CDS	universal stress family protein			
+	1152012	1153727	1716	Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)	peg	gi|57116681|ref|NC_000962.2|_1152012_1153727		K+-transporting ATPase, KdpA	3.6.3.12	CDS	K+-transporting ATPase, A subunit	3.6.3.12	kdpA	
+	1153727	1155853	2127	Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)	peg	gi|57116681|ref|NC_000962.2|_1153739_1155853		K+-transporting ATPase, B subunit	3.6.3.12	CDS	K+-transporting ATPase, B subunit	3.6.3.12	kdpB	
+	1155853	1156422	570	Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)	peg	gi|57116681|ref|NC_000962.2|_1155883_1156422		K+-transporting ATPase, C subunit	3.6.3.12	CDS	K+-transporting ATPase, C subunit	3.6.3.12	kdpC	
-	1156426	1157955	1530	Sensor protein basS/pmrB (EC 2.7.3.-)	peg	gi|57116681|ref|NC_000962.2|_1157886_1156426		Signal transduction histidine kinase	2.7.13.3	CDS	putative sensor histidine kinase TcrY			
-	1157963	1158736	774	DNA-binding response regulator TrcR	peg	gi|57116681|ref|NC_000962.2|_1158736_1157963		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	putative transcriptional regulatory protein TcrX			
-	1158918	1159409	492	transposase	peg	gi|57116681|ref|NC_000962.2|_1159409_1158918		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
-	1159375	1160061	687	PROBABLE TRANSPOSASE (FRAGMENT)	peg	gi|57116681|ref|NC_000962.2|_1160061_1159375		hypothetical protein		CDS	putative transposase			
-	1160095	1160418	324	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1160418_1160095		hypothetical protein		CDS	conserved hypothetical protein			
-	1160544	1160828	285	ESAT-6-like protein EsxL	peg	gi|57116681|ref|NC_000962.2|_1160828_1160544		Proteins of 100 residues with WXG.		CDS	putative ESAT-6-like protein 6			
-	1160855	1161151	297	COG0840: Methyl-accepting chemotaxis protein	peg	gi|57116681|ref|NC_000962.2|_1161151_1160855		WXG100 family type VII secretion target		CDS	putative ESAT-6-like protein 7			
-	1161297	1162472	1176	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1162472_1161297		PPE-repeat proteins		CDS	PPE family protein			
-	1162549	1163376	828	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1163376_1162549		Polymorphic PE/PPE proteins C terminal./PE family.		CDS	PE family protein			
-	1163774	1163929	156	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1163929_1163774					hypothetical protein			
-	1164164	1164436	273	FIG00822458: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1164280_1164164		hypothetical protein		CDS	conserved hypothetical protein			
-	1164309	1164527	219	FIG00824608: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1164527_1164309					conserved hypothetical protein			
-	1164572	1165009	438	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1165009_1164572		Transposase and inactivated derivatives		CDS	transposase DDE domain protein			
-	1165092	1165499	408	FIG00821422: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1165490_1165092		Transposase and inactivated derivatives		CDS	conserved hypothetical protein			
-	1165781	1166806	1026	protease-related protein	peg	gi|57116681|ref|NC_000962.2|_1166806_1165781		Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain		CDS	trypsin family protein			
+	1167092	1167676	585	FIG00820089: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1167245_1167676		Predicted transcriptional regulator		CDS	conserved hypothetical protein			
+	1167673	1168554	882	FIG00821115: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1167673_1168554		Nucleotidyl transferase of unknown function (DUF1814).		CDS	conserved hypothetical protein			
+	1169136	1169360	225	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1169136_1169360								
+	1169375	1170670	1296	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1169375_1170670		Transposase and inactivated derivatives		CDS	transposase, Mutator family protein			
-	1171038	1172072	1035	FIG00821061: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1172033_1171038		hypothetical protein		CDS	conserved hypothetical protein			
-	1172110	1172313	204	FIG00820551: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1172313_1172110		hypothetical protein		CDS	hypothetical protein			
+	1172386	1172832	447	Organic hydroperoxide resistance transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_1172386_1172832		Transcriptional regulators		CDS	marR family protein			
+	1172878	1173786	909	"Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)"	peg	gi|57116681|ref|NC_000962.2|_1172878_1173786		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
-	1173945	1174700	756	FIG00821028: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1174700_1173945		Helix-turn-helix domain./Nucleotidyl transferase of unknown function (DUF1814).		CDS	conserved hypothetical protein			
-	1174927	1175199	273	Abortive infection protein AbiGI	peg	gi|57116681|ref|NC_000962.2|_1175199_1174927								
-	1174995	1175621	627				hypothetical protein		CDS				
-	1176011	1176265	255				hypothetical protein		CDS				
+	1175861	1176112	252	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1175861_1176112		hypothetical protein		CDS	hypothetical protein			
+	1176228	1176485	258				hypothetical protein		CDS	conserved hypothetical protein			
+	1176928	1177242	315	Integrase	peg	gi|57116681|ref|NC_000962.2|_1177024_1177242					putative gp85			
+	1177628	1178392	765	FIG00820480: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1177712_1178392		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1179345	1180577	1233	"surface antigen, putative"	peg	gi|57116681|ref|NC_000962.2|_1179396_1180577		Uncharacterized conserved protein		CDS	lactonase, 7-bladed beta-propeller family protein			
+	1180684	1182315	1632	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1180684_1182315		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	AMP-binding enzyme family protein			
+	1182397	1183455	1059	FIG00821199: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1182397_1183455		Uncharacterized conserved protein related to dihydrodipicolinate reductase		CDS	dihydrodipicolinate reductase, family protein			
+	1183508	1183981	474	FIG00820309: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1183508_1183981		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	1184015	1184878	864	"glutamine amidotransferases, class-II"	peg	gi|57116681|ref|NC_000962.2|_1184033_1184878		Predicted glutamine amidotransferase		CDS	glutamine amidotransferase domain protein			
+	1184856	1185740	885	"probably phosphoesterase, evidenced by COGnitor"	peg	gi|57116681|ref|NC_000962.2|_1184883_1185740		Predicted esterase of the alpha-beta hydrolase superfamily		CDS	patatin-like phospholipase family protein			
-	1185741	1186823	1083	UPF0028 protein YchK	peg	gi|57116681|ref|NC_000962.2|_1186823_1185741		Predicted esterase of the alpha-beta hydrolase superfamily		CDS	patatin-like phospholipase family protein			
-	1186904	1187323	420	PUTATIVE LIPOPROTEIN LPQV	peg	gi|57116681|ref|NC_000962.2|_1187323_1186904		hypothetical protein		CDS	putative lipoprotein lpqV			
+	1187435	1188001	567	FIG00822063: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1187540_1188001		Cysteine dioxygenase type I.		CDS	cysteine dioxygenase type I family protein			
+	1187998	1188393	396	FIG00820003: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1187998_1188393		Rhodanese-related sulfurtransferase		CDS	rhodanese-like domain protein			
-	1188421	1190424	2004	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1190424_1188421		PE family.		CDS	PE family protein			
-	1190757	1192148	1392	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1192031_1190757		PE family.		CDS	PE family protein			
-	1192510	1194273	1764	Predicted membrane protein (DUF2319)	peg	gi|57116681|ref|NC_000962.2|_1194273_1192510		Predicted membrane protein		CDS	conserved hypothetical protein			
-	1194270	1195043	774	enoyl-CoA hydratase( EC:4.2.1.17 )	peg	gi|57116681|ref|NC_000962.2|_1195043_1194270		short chain enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	putative enoyl-CoA hydratase echA8			
-	1195055	1196092	1038	3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)	peg	gi|57116681|ref|NC_000962.2|_1196092_1195055		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase/isomerase family protein			
+	1196279	1197115	837	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1196279_1197115		Predicted membrane protein		CDS	inhibitor of apoptosis-promoting Bax1 family protein			
+	1197222	1198082	861	FIG00823211: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1197222_1198082		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	1198156	1199373	1218	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	peg	gi|57116681|ref|NC_000962.2|_1199322_1198156		acetyl-CoA acetyltransferases	2.3.1.9	CDS	acetyl-CoA C-acetyltransferase family protein			
-	1199426	1200376	951	CONSERVED EXPORTED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1200376_1199426		Lysophospholipase L1 and related esterases		CDS	GDSL-like Lipase/Acylhydrolase family protein			
+	1200593	1201660	1068	esterase	peg	gi|57116681|ref|NC_000962.2|_1200593_1201660		Esterase/lipase		CDS	alpha/beta hydrolase fold family protein			
+	1201717	1203111	1395	Cystathionine beta-synthase (EC 4.2.1.22)	peg	gi|57116681|ref|NC_000962.2|_1201717_1203111		cystathionine beta-synthase (EC 4.2.1.22)	4.2.1.22	CDS	cystathionine beta-synthase	4.2.1.22		
+	1203298	1204035	738	Proline-rich antigen homolog	peg	gi|57116681|ref|NC_000962.2|_1203298_1204035		RDD family.		CDS	RDD family protein			
+	1204067	1205233	1167	Cystathionine gamma-lyase (EC 4.4.1.1)	peg	gi|57116681|ref|NC_000962.2|_1204067_1205233		cystathionine gamma-lyase (EC 4.4.1.1)	2.5.1.48	CDS	cystathionine gamma-synthase MetB		metB	
-	1205304	1205798	495	Transcription elongation factor GreA	peg	gi|57116681|ref|NC_000962.2|_1205798_1205304		transcription elongation factor GreA		CDS	transcription elongation factor greA		greA	
-	1205984	1206418	435	FIG00821098: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1206325_1205984		Domain of unknown function (DUF4307).		CDS	conserved hypothetical protein			
+	1206520	1207386	867	Mycothiol S-conjugate amidase Mca	peg	gi|57116681|ref|NC_000962.2|_1206520_1207386		mycothiol conjugate amidase Mca		CDS	mycothiol conjugate amidase Mca		mca	
+	1207383	1207649	267	probable secreted protein	peg	gi|57116681|ref|NC_000962.2|_1207383_1207649		hypothetical protein		CDS	conserved hypothetical protein			
+	1207636	1209657	2022	Thymidylate kinase (EC 2.7.4.9)	peg	gi|57116681|ref|NC_000962.2|_1207717_1209657		Highly conserved protein containing a thioredoxin domain		CDS	conserved hypothetical protein			
-	1209756	1210532	777	COG1272: Predicted membrane protein hemolysin III homolog	peg	gi|57116681|ref|NC_000962.2|_1210532_1209756		channel protein, hemolysin III family		CDS	channel , hemolysin III family protein			
+	1210595	1211383	789	"(2E,6Z)-farnesyl diphosphate synthase (EC 2.5.1.68)"	peg	gi|57116681|ref|NC_000962.2|_1210595_1211383		Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31)	2.5.1.68	CDS	di-trans,poly-cis-decaprenylcistransferase	2.5.1.31	uppS	
+	1211560	1213863	2304	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1211560_1213863		PE family.		CDS	PE family protein			
+	1214049	1214360	312	Undecaprenyl diphosphate synthase (EC 2.5.1.31)	peg	gi|57116681|ref|NC_000962.2|_1214049_1214360		Undecaprenyl pyrophosphate synthase		CDS	undecaprenyl diphosphate synthase family protein			
+	1214513	1214947	435	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1214513_1214947					PE family protein			
+	1214826	1215131	306	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1214964_1215131		hypothetical protein		CDS	pE family protein			
+	1215225	1215407	183	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1215225_1215407					putative predicted protein			
+	1215599	1216054	456	"PROBABLE CELLULASE CELA2B (ENDO-1,4-BETA-GLUCANASE) (ENDOGLUCANASE) (CARBOXYMETHYL CELLULASE) (EC 3.2.1.4)"	peg	gi|57116681|ref|NC_000962.2|_1215599_1216054		Glycosyl hydrolase family 12.	3.2.1.4	CDS	glycosyl hydrolase 12 family protein			
+	1216469	1219030	2562	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1216469_1219030		PE family.		CDS	PE family protein			
-	1219248	1220186	939	Pantothenate kinase (EC 2.7.1.33)	peg	gi|57116681|ref|NC_000962.2|_1220120_1219248		pantothenate kinase (EC 2.7.1.33)	2.7.1.33	CDS	pantothenate kinase	2.7.1.33	coaA	
+	1220538	1221854	1317	Serine hydroxymethyltransferase 1 (EC 2.1.2.1)	peg	gi|57116681|ref|NC_000962.2|_1220538_1221854		serine hydroxymethyltransferase (EC 2.1.2.1)	2.1.2.1	CDS	serine hydroxymethyltransferase 1	2.1.2.1	glyA1	
+	1221935	1222786	852	Fatty acid desaturase occurring in virulence cluster	peg	gi|57116681|ref|NC_000962.2|_1221935_1222786		Fatty acid desaturase.		CDS	putative acyl-[acyl-carrier-protein] desaturase desA2			
+	1222997	1224298	1302	Predicted ATPase related to phosphate starvation-inducible protein PhoH	peg	gi|57116681|ref|NC_000962.2|_1222997_1224298		Predicted ATPase related to phosphate starvation-inducible protein PhoH		CDS	PIN domain protein			
+	1224385	1225260	876	Possible glycosyl hydrolase (EC 3.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_1224385_1225260		Predicted xylanase/chitin deacetylase		CDS	polysaccharide deacetylase family protein			
-	1225263	1226144	882	PROBABLE MEMBRANE GLYCINE AND PROLINE RICH PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1226144_1225263		hypothetical protein		CDS	putative glycine and proline rich membrane protein			
-	1226141	1227565	1425	Fumarate hydratase class II (EC 4.2.1.2)	peg	gi|57116681|ref|NC_000962.2|_1227565_1226141		fumarase, class II (EC 4.2.1.2)	4.2.1.2	CDS	fumarate hydratase class II	4.2.1.2	fumC	
-	1227596	1228684	1089	"Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)"	peg	gi|57116681|ref|NC_000962.2|_1228684_1227596		fructose-1,6-bisphosphatase, class II	3.1.3.11	CDS	fructose-1,6-bisphosphatase, class II	3.1.3.11	glpX	
+	1228623	1229384	762	FIG00820022: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1228740_1229384		Protein of unknown function (DUF4245).		CDS	conserved hypothetical protein			
-	1229391	1230548	1158	CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1230548_1229391		Predicted permease		CDS	conserved hypothetical protein			
-	1230660	1230971	312	"Death on curing protein, Doc toxin"	peg	gi|57116681|ref|NC_000962.2|_1230971_1230660		Growth inhibitor	3.1.-	CDS	mRNA interferase MazF3	3.1.-.-	mazF3	
-	1230971	1231291	321	"Prevent host death protein, Phd antitoxin"	peg	gi|57116681|ref|NC_000962.2|_1231183_1230971		hypothetical protein		CDS	antitoxin MazE3		mazE3	
+	1231301	1231990	690	Carboxylesterase (EC 3.1.1.1)	peg	gi|57116681|ref|NC_000962.2|_1231301_1231990		Carboxylesterase type B	3.1.1.-	CDS	alpha/beta hydrolase fold family protein			
+	1232064	1232462	399	"Carboxylesterase, type B"	peg	gi|57116681|ref|NC_000962.2|_1232064_1232462					carboxylesterase family protein			
+	1232311	1232826	516	"Carboxylesterase, type B"	peg	gi|57116681|ref|NC_000962.2|_1232476_1232826		Carboxylesterase type B	3.1.1.-	CDS	carboxylesterase family protein			
-	1232844	1233956	1113	PROBABLE CHOLESTEROL DEHYDROGENASE	peg	gi|57116681|ref|NC_000962.2|_1233944_1232844		Nucleoside-diphosphate-sugar epimerases	1.1.1.145, 5.3.3.1	CDS	3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase	5.3.3.1		
-	1233966	1234223	258	Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	peg	gi|57116681|ref|NC_000962.2|_1234121_1233966		Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	3.1.11.6	CDS	exodeoxyribonuclease VII, small subunit	3.1.11.6	xseB	
-	1234213	1235460	1248	Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	peg	gi|57116681|ref|NC_000962.2|_1235460_1234213		Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	3.1.11.6	CDS	exodeoxyribonuclease VII, large subunit	3.1.11.6	xseA	
-	1235457	1236095	639	FIG00997309: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1236095_1235457		hypothetical protein		CDS	conserved hypothetical protein			
+	1236158	1237192	1035	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	peg	gi|57116681|ref|NC_000962.2|_1236158_1237192		4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	1.17.1.2	CDS	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1.17.1.2	ispH	
-	1237209	1238192	984	INTEGRAL MEMBRANE PROTEIN (Rhomboid family)	peg	gi|57116681|ref|NC_000962.2|_1238192_1237209		hypothetical protein		CDS	putative membrane protein			
+	1238255	1239328	1074	GTP-binding and nucleic acid-binding protein YchF	peg	gi|57116681|ref|NC_000962.2|_1238255_1239328		GTP-binding protein YchF		CDS	50S ribosome-binding GTPase family protein			
+	1239416	1239613	198	FIG00820531: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1239428_1239613		Uncharacterized protein conserved in bacteria (DUF2191).		CDS	antitoxin VapB32		vapB32	
+	1239610	1239984	375	PIN domain protein	peg	gi|57116681|ref|NC_000962.2|_1239610_1239984		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC32			
+	1240187	1240885	699	hypothetical protein Rv1115	peg	gi|57116681|ref|NC_000962.2|_1240244_1240885		hypothetical protein		CDS	nlpC/P60 family protein			
-	1241115	1241390	276	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1241390_1241115		hypothetical protein		CDS	pe family domain protein			
+	1241015	1241188	174				hypothetical protein		CDS				
+	1241633	1241956	324	FIG00822251: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1241633_1241956		Uncharacterized conserved protein		CDS	antibiotic biosynthesis monooxygenase family protein			
-	1241971	1242681	711	FIG022780: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1242681_1241971		hypothetical protein		CDS	conserved hypothetical protein			
-	1242864	1243064	201	hypothetical protein Rv1119c	peg	gi|57116681|ref|NC_000962.2|_1243013_1242864		hypothetical protein		CDS	conserved hypothetical protein			
+	1242703	1242912	210	FIG00820811: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1242703_1242912		hypothetical protein		CDS	conserved hypothetical protein			
-	1243010	1243504	495	lipJ	peg	gi|57116681|ref|NC_000962.2|_1243504_1243010		Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	adenylate and Guanylate cyclase catalytic domain protein			
+	1243707	1245107	1401	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	peg	gi|57116681|ref|NC_000962.2|_1243707_1245107		glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	1.1.1.49	CDS	glucose-6-phosphate dehydrogenase	1.1.1.49	zwf	
-	1246144	1247052	909	Possible peroxidase bpoB (Non-haem peroxidase) (EC 1.11.1.-)	peg	gi|57116681|ref|NC_000962.2|_1246890_1246144		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	1.11.1.-	CDS	alpha/beta hydrolase fold family protein			
+	1245129	1246151	1023	"6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)"	peg	gi|57116681|ref|NC_000962.2|_1245129_1246151		6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44)	1.1.1.44	CDS	6-phosphogluconate dehydrogenase	1.1.1.44	gnd	
+	1246850	1247089	240	FIG00821602: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1246850_1247089					hypothetical protein			
+	1247172	1248077	906	Probable epoxide hydrolase ephC (EC 3.3.2.9)	peg	gi|57116681|ref|NC_000962.2|_1247172_1248077		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.3.2.9	CDS	alpha/beta hydrolase fold family protein			
+	1248082	1249326	1245	FIG028963: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1248082_1249326		hypothetical protein		CDS	conserved hypothetical protein			
-	1249330	1249935	606	FIG00823918: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1249935_1249330		hypothetical protein		CDS	conserved hypothetical protein			
-	1249932	1251404	1473	"Pyruvate,phosphate dikinase (EC 2.7.9.1)"	peg	gi|57116681|ref|NC_000962.2|_1251404_1249932		Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	2.7.9.1	CDS	pyruvate phosphate dikinase, PEP/pyruvate binding domain protein			
-	1251617	1252972	1356	FIG00829478: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1252930_1251617		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
-	1253074	1254534	1461	"Transcriptional regulator, XRE family"	peg	gi|57116681|ref|NC_000962.2|_1254435_1253074		Predicted transcriptional regulator		CDS	helix-turn-helix family protein			
+	1254609	1256135	1527	2-methylcitrate dehydratase (EC 4.2.1.79)	peg	gi|57116681|ref|NC_000962.2|_1254609_1256135		Uncharacterized protein involved in propionate catabolism	4.2.1.79	CDS	mmgE/PrpD family protein			
+	1256132	1257313	1182	2-methylcitrate synthase (EC 2.3.3.5)	peg	gi|57116681|ref|NC_000962.2|_1256132_1257313		2-methylcitrate synthase/citrate synthase II	2.3.3.1	CDS	2-methylcitrate synthase 1	2.3.3.5	prpC1	
+	1257325	1259055	1731	CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1257325_1259055		Transmembrane protein of unknown function (DUF3556).		CDS	conserved hypothetical protein			
-	1259067	1261346	2280	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	peg	gi|57116681|ref|NC_000962.2|_1261346_1259067		methionine synthase (B12-independent) (EC 2.1.1.14)	2.1.1.14	CDS	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	2.1.1.14	metE	
+	1261922	1262158	237	MTCI65.01 protein	peg	gi|57116681|ref|NC_000962.2|_1261922_1262158		hypothetical protein		CDS	conserved hypothetical protein			
-	1262272	1264128	1857	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1264128_1262272		PPE-repeat proteins		CDS	PPE family protein			
+	1264314	1264556	243	ketoacyl-CoA thiolase-related protein	peg	gi|57116681|ref|NC_000962.2|_1264338_1264556		Acetyl-CoA acetyltransferase	2.3.1.9	CDS	thiolase, C-terminal domain protein			
+	1264606	1264947	342	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_1264606_1264947		Enoyl-CoA hydratase/carnithine racemase		CDS	carnitinyl-CoA dehydratase	4.2.1.-		
+	1265097	1265438	342	FIG00825033: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1265097_1265438					putative enoyl-CoA hydratase/isomerase			
-	1265472	1266488	1017	PUTATIVE OXIDOREDUCTASE	peg	gi|57116681|ref|NC_000962.2|_1266488_1265472		Dehydrogenases (flavoproteins)		CDS	FAD binding domain protein			
-	1266485	1266985	501	FIG00823635: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1266985_1266485		Uncharacterized protein conserved in bacteria		CDS	isoprenylcysteine carboxyl methyltransferase family protein			
-	1266990	1267439	450				hypothetical protein		CDS				
+	1267473	1268195	723	PROBABLE INTEGRAL MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1267473_1268195		CAAX protease self-immunity.		CDS	CAAX protease self-immunity family protein			
-	1268203	1269009	807	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_1269009_1268203		Enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	enoyl-CoA hydratase/isomerase			
-	1269152	1269958	807	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_1269958_1269152		Enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	enoyl-CoA hydratase/isomerase			
+	1269957	1271144	1188	Alpha-methylacyl-CoA racemase (EC 5.1.99.4)	peg	gi|57116681|ref|NC_000962.2|_1269957_1271144		Predicted acyl-CoA transferases/carnitine dehydratase	5.1.99.4	CDS	coA-transferase III family protein			
+	1271156	1271908	753	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	peg	gi|57116681|ref|NC_000962.2|_1271156_1271908		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
+	1272249	1273334	1086	Transmembrane transport protein MmpL13b	peg	gi|57116681|ref|NC_000962.2|_1272249_1273334		Predicted drug exporters of the RND superfamily		CDS	MMPL family protein			
+	1273286	1274767	1482	Transmembrane transport protein MmpL13b	peg	gi|57116681|ref|NC_000962.2|_1273286_1274767		Predicted drug exporters of the RND superfamily		CDS	MMPL family protein			
+	1274900	1275550	651	Methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_1274900_1275550		Methyltransferase domain.		CDS	methyltransferase domain protein			
+	1275720	1275974	255	FIG00820117: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1275720_1275974					conserved hypothetical protein			
-	1276028	1276330	303	Partial REP13E12 repeat protein	peg	gi|57116681|ref|NC_000962.2|_1276303_1276028					hypothetical protein			
-	1276300	1277799	1500	Partial REP13E12 repeat protein	peg	gi|57116681|ref|NC_000962.2|_1277799_1276300		Domain of unknown function (DUF222)./HNH endonuclease.		CDS	HNH endonuclease family protein			
+	1277893	1278300	408	FIG00821422: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1277902_1278300		Transposase and inactivated derivatives		CDS	conserved hypothetical protein			
+	1278383	1278820	438	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1278383_1278820		Transposase and inactivated derivatives		CDS	transposase DDE domain protein			
-	1278904	1279617	714	NAD-dependent protein deacetylase of SIR2 family	peg	gi|57116681|ref|NC_000962.2|_1279611_1278904		NAD-dependent protein deacetylases, SIR2 family	3.5.1.-	CDS	NAD-dependent deacetylase	3.5.1.-	cobB	
-	1279998	1280846	849	omt (omt)	peg	gi|57116681|ref|NC_000962.2|_1280846_1279998		O-Methyltransferase involved in polyketide biosynthesis		CDS	leucine carboxyl methyltransferase family protein			
+	1279655	1280020	366	"Transcriptional regulator, GntR family"	peg	gi|57116681|ref|NC_000962.2|_1279655_1280020		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
-	1280843	1281430	588	FIG00820224: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1281430_1280843		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1281429	1281872	444	"Pyridoxine 5'-phosphate oxidase, Rv1155"	peg	gi|57116681|ref|NC_000962.2|_1281429_1281872		PPOX class probable F420-dependent enzyme		CDS	putative pyridoxine/pyridoxamine 5'-phosphate oxidase			
+	1282030	1282218	189	FIG00821392: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1282030_1282218		hypothetical protein		CDS	conserved hypothetical protein			
+	1282306	1282893	588	FIG00822543: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1282306_1282893		uncharacterized HhH-GPD family protein		CDS	hhH-GPD superbase excision DNA repair family protein			
-	1283056	1284171	1116	FIG00824206: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1284171_1283056		hypothetical protein		CDS	conserved hypothetical protein			
-	1284179	1284862	684	Conserved alanine and proline rich protein	peg	gi|57116681|ref|NC_000962.2|_1284862_1284179		hypothetical protein		CDS	conserved hypothetical protein			
-	1286284	1286562	279	Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	peg	gi|57116681|ref|NC_000962.2|_1286562_1286284		pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	4.2.1.96	CDS	putative pterin-4-alpha-carbinolamine dehydratase			
+	1284992	1286287	1296	probable conserved membrane protein	peg	gi|57116681|ref|NC_000962.2|_1285124_1286287		Protein of unknown function (DUF2029).	2.4.1.-	CDS	polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol pentamannoside mannosyltransferase	2.4.1.-	pimE	
+	1286595	1287020	426	"Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)"	peg	gi|57116681|ref|NC_000962.2|_1286595_1287020		ADP-ribose pyrophosphatase	3.6.1.-	CDS	NUDIX domain protein			
+	1287328	1291026	3699	Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	peg	gi|57116681|ref|NC_000962.2|_1287328_1291026		respiratory nitrate reductase alpha subunit apoprotein	1.7.99.4	CDS	nitrate reductase, alpha subunit	1.7.99.4		
+	1291065	1292741	1677	Respiratory nitrate reductase beta chain (EC 1.7.99.4)	peg	gi|57116681|ref|NC_000962.2|_1291065_1292741		respiratory nitrate reductase beta subunit	1.7.99.4	CDS	nitrate reductase, beta subunit	1.7.99.4	narH	
+	1292738	1293403	666	Respiratory nitrate reductase delta chain (EC 1.7.99.4)	peg	gi|57116681|ref|NC_000962.2|_1292738_1293403		respiratory nitrate reductase chaperone NarJ		CDS	nitrate reductase molybdenum cofactor assembly chaperone		narJ	
+	1293406	1294146	741	Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	peg	gi|57116681|ref|NC_000962.2|_1293415_1294146		respiratory nitrate reductase, gamma subunit	1.7.99.4	CDS	respiratory nitrate reductase, gamma subunit	1.7.99.4	narI	
+	1294168	1296054	1887	GTP-binding protein TypA/BipA	peg	gi|57116681|ref|NC_000962.2|_1294168_1296054		GTP-binding protein TypA/BipA		CDS	GTP-binding protein TypA/BipA		typA	
+	1296152	1298059	1908	LpqW	peg	gi|57116681|ref|NC_000962.2|_1296152_1298059		Bacterial extracellular solute-binding proteins, family 5 Middle.		CDS	putative monoacyl phosphatidylinositol tetramannoside-binding protein LpqW			
-	1298087	1298692	606	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_1298692_1298087		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	1298764	1299804	1041	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1299804_1298764		Polymorphic PE/PPE proteins C terminal./PPE family.		CDS	conserved hypothetical protein			
-	1299822	1300124	303	"(MTV005.05c), len: 100. similar to the N-terminal region of the M. tuberculosis PE family of proteinseg. TR:O05297 (EMBL:Z93777) MTCI364.07 (99 aa), fasta scores; opt: 209 z-score: 407.6 E(): 1.6e-15, 37.4% identityin 99 aa overlap. Also simlar to the N-terminus of M. tuberculosis TR:P77909 (EMBL:U76006) ESTERASE/LIPASE (EC 3.1.1.3) (TRIACYLGLYCEROL LIPASE) (437 aa), fasta scores; opt: 193z-score: 381.8 E(): 4.4e-14, 37.2% identity in 94 aa overlap. Contains a helix-turn-heix motiffrom aa 88-109(+2.76 SD)"	peg	gi|57116681|ref|NC_000962.2|_1300124_1299822		PE family.		CDS	PE family protein			
+	1300304	1301215	912	N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB	peg	gi|57116681|ref|NC_000962.2|_1300304_1301215		N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	3.5.1.103	CDS	N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	3.5.1.103	mshB	
+	1301385	1301747	363	FIG00820431: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1301385_1301747		hypothetical protein		CDS	putative membrane protein			
-	1301755	1302681	927	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1302681_1301755		PE family.		CDS	PE family protein			
+	1303006	1305501	2496	"7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1 / 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2"	peg	gi|57116681|ref|NC_000962.2|_1303051_1305501		FO synthase subunit 1 (EC 2.5.1.77)/FO synthase subunit 2 (EC 2.5.1.77)	2.5.1.-	CDS	7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit	2.5.1.77	cofG	
-	1305669	1306001	333	LOW MOLECULAR WEIGHT T-CELL ANTIGEN TB8.4	peg	gi|57116681|ref|NC_000962.2|_1306001_1305669		hypothetical protein		CDS	putative rv1174c protein			
-	1306202	1308226	2025	"2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)"	peg	gi|57116681|ref|NC_000962.2|_1308226_1306202		2,4-dienoyl-CoA reductase (EC 1.3.1.34)	1.3.1.34	CDS	NADH:flavin oxidoreductase / NADH oxidase family protein			
-	1308223	1308792	570	"Transcriptional regulator, PadR family"	peg	gi|57116681|ref|NC_000962.2|_1308792_1308223		transcriptional regulator, PadR family		CDS	transcriptional regulator PadR-like family protein			
+	1309005	1309331	327	"4Fe-4S ferredoxin, iron-sulfur binding"	peg	gi|57116681|ref|NC_000962.2|_1309005_1309331		Ferredoxin		CDS	ferredoxin		fdxA	
+	1309364	1310452	1089	"N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17)"	peg	gi|57116681|ref|NC_000962.2|_1309364_1310452		succinyldiaminopimelate aminotransferase apoenzyme (EC 2.6.1.17)		CDS	succinyldiaminopimelate transaminase	2.6.1.17	dapC	
-	1310480	1313299	2820	DNA or RNA helicases of superfamily II	peg	gi|57116681|ref|NC_000962.2|_1313299_1310480		DNA or RNA helicases of superfamily II		CDS	helicase conserved C-terminal domain protein			
+	1313725	1315191	1467	Polyketide synthase	peg	gi|57116681|ref|NC_000962.2|_1313725_1315191		Beta-ketoacyl synthase, N-terminal domain./Beta-ketoacyl synthase, C-terminal domain.		CDS	beta-ketoacyl synthase, C-terminal domain protein			
+	1315234	1319982	4749	Polyketide synthase	peg	gi|57116681|ref|NC_000962.2|_1315234_1319982		KR domain./Alcohol dehydrogenase GroES-like domain./Acyl transferase domain./Zinc-binding dehydrogenase./Phosphopantetheine attachment site.		CDS	mycocerosic acid synthase	2.3.1.111	mas	
+	1320035	1321453	1419	POSSIBLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA2	peg	gi|57116681|ref|NC_000962.2|_1320035_1321453		Condensation domain.		CDS	trehalose-2-sulfate acyltransferase papA2	2.3.1.-	papA2	
+	1321520	1324528	3009	"membrane protein, MmpL family, putative"	peg	gi|57116681|ref|NC_000962.2|_1321520_1324528		Transport protein		CDS	membrane transport protein mmpL8		mmpL8	
-	1324532	1325623	1092	POSSIBLE EXPORTED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1325482_1324532		PE-PPE domain.		CDS	PE-PPE domain protein			
-	1325776	1327512	1737	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1327512_1325776		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	putative fatty-acid--CoA ligase fadD21			
-	1327689	1329305	1617	Regulator of polyketide synthase expression	peg	gi|57116681|ref|NC_000962.2|_1329305_1327689		Regulator of polyketide synthase expression		CDS	pucR C-terminal helix-turn-helix domain protein			
+	1329378	1331021	1644	Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	peg	gi|57116681|ref|NC_000962.2|_1329378_1331021		delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	1.5.1.12	CDS	1-pyrroline-5-carboxylate dehydrogenase	1.5.1.12	pruA	
+	1331021	1332010	990	Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)	peg	gi|57116681|ref|NC_000962.2|_1331021_1332010		L-proline dehydrogenase (EC 1.5.99.8)	1.5.99.8	CDS	proline dehydrogenase family protein			
+	1332092	1332964	873	putative RNA polymerase sigma factor	peg	gi|57116681|ref|NC_000962.2|_1332092_1332964		RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma factor, sigma-70 family protein			
+	1332986	1333858	873	"hydrolase, alpha/beta hydrolase fold family"	peg	gi|57116681|ref|NC_000962.2|_1332986_1333858		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
+	1333889	1334845	957	putative RNA polymerase sigma factor	peg	gi|57116681|ref|NC_000962.2|_1333889_1334845		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
+	1334927	1335754	828	FIG00820332: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1334927_1335754		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase family protein			
+	1335794	1337215	1422	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1335794_1337215		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	putative fatty acid synthase			
-	1337248	1338513	1266	Regulator of polyketide synthase expression	peg	gi|57116681|ref|NC_000962.2|_1338513_1337248		Regulator of polyketide synthase expression		CDS	pucR C-terminal helix-turn-helix domain protein			
-	1338605	1338760	156	FIG00822167: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1338760_1338605					conserved hypothetical protein			
-	1338829	1339002	174							hypothetical protein			
+	1338997	1339302	306	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1339003_1339302		PE family.		CDS	PE family protein			
+	1339349	1340524	1176	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1339349_1340524		PPE-repeat proteins		CDS	PPE family protein			
+	1340659	1340955	297	ESAT-6-like protein EsxK	peg	gi|57116681|ref|NC_000962.2|_1340659_1340955		WXG100 family type VII secretion target		CDS	putative ESAT-6-like protein 7			
+	1341006	1341290	285	ESAT-6-like protein EsxL	peg	gi|57116681|ref|NC_000962.2|_1341006_1341290		Proteins of 100 residues with WXG.		CDS	putative ESAT-6-like protein 6			
-	1341358	1342653	1296	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1342653_1341358		Transposase and inactivated derivatives		CDS	transposase, Mutator family protein			
-	1344216	1345202	987	"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)"	peg	gi|57116681|ref|NC_000962.2|_1345202_1344216		2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	2.3.1.117	CDS	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	2.3.1.117	dapD	
+	1342909	1344219	1311	Permeases of the major facilitator superfamily	peg	gi|57116681|ref|NC_000962.2|_1342909_1344219		metabolite-proton symporter		CDS	H+ symporter family protein			
-	1346321	1346905	585	FIG00820207: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1346902_1346321		hypothetical protein		CDS	conserved hypothetical protein			
+	1345260	1346324	1065	"N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)"	peg	gi|57116681|ref|NC_000962.2|_1345260_1346324		succinyldiaminopimelate desuccinylase (EC 3.5.1.18)	3.5.1.18	CDS	succinyl-diaminopimelate desuccinylase	3.5.1.18	dapE	
-	1346936	1348624	1689	ATPase	peg	gi|57116681|ref|NC_000962.2|_1348606_1346936		AAA ATPase domain.		CDS	AAA ATPase domain protein			
+	1348719	1349282	564	Lysine decarboxylase family	peg	gi|57116681|ref|NC_000962.2|_1348719_1349282		TIGR00730 family protein		CDS	conserved hypothetical protein			
+	1349332	1351125	1794	Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1349332_1351125		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	AMP-binding enzyme family protein			
+	1351064	1351309	246	FIG00822783: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1351187_1351309		hypothetical protein		CDS	inactive dihydropteroate synthase 2 domain protein	2.5.1.15	folP2	
+	1351323	1352147	825	Non functional Dihydropteroate synthase 2	peg	gi|57116681|ref|NC_000962.2|_1351323_1352147		Dihydropteroate synthase (EC 2.5.1.15)	2.5.1.15	CDS	dihydropteroate synthase	2.5.1.15	folP	
+	1352144	1353118	975	Glycosyltransferases involved in cell wall biogenesis	peg	gi|57116681|ref|NC_000962.2|_1352144_1353118		Glycosyltransferases involved in cell wall biogenesis	2.4.1.-	CDS	conserved hypothetical protein			
+	1353157	1353525	369	FIG01000442: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1353157_1353525		DivIVA domain		CDS	divIVA domain protein			
+	1353522	1354136	615	DNA-3-methyladenine glycosylase (EC 3.2.2.20)	peg	gi|57116681|ref|NC_000962.2|_1353522_1354136		DNA-3-methyladenine glycosylase I (EC 3.2.2.20)	3.2.2.20	CDS	DNA-3-methyladenine glycosylase I family protein	3.2.2.20	tag	
+	1354303	1354470	168	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1354303_1354470		Protein of unknown function (DUF3117).		CDS	conserved hypothetical protein			
-	1354498	1355661	1164	"Predicted glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21), Actinobacterial type"	peg	gi|57116681|ref|NC_000962.2|_1355661_1354498		glycogen synthase (ADP-glucose)	2.4.1.21	CDS	glycogen synthase, Corynebacterium family protein		glgA	
+	1355836	1357050	1215	Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)	peg	gi|57116681|ref|NC_000962.2|_1355854_1357050		glucose-1-phosphate adenylyltransferase	2.7.7.27	CDS	glucose-1-phosphate adenylyltransferase	2.7.7.27	glgC	
-	1357293	1357625	333	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1357625_1357293		PE family.		CDS	PE family protein			
-	1357759	1359444	1686	Cocaine esterase (EC 3.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_1359444_1357759		putative hydrolase, CocE/NonD family		CDS	hydrolase CocE/NonD family protein			
-	1359472	1360146	675	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1360146_1359472		Putative protein-S-isoprenylcysteine methyltransferase		CDS	ergosterol biosynthesis ERG4/ERG24 family protein			
-	1360155	1361801	1647	PROBABLE TETRONASIN-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER	peg	gi|57116681|ref|NC_000962.2|_1361801_1360155		Putative exporter of polyketide antibiotics		CDS	ABC-2 transporter family protein			
-	1361798	1362733	936	"ABC-type multidrug transport system, ATPase component"	peg	gi|57116681|ref|NC_000962.2|_1362733_1361798		ABC-type multidrug transport system, ATPase component		CDS	ABC transporter family protein			
-	1362723	1363361	639	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_1363361_1362723		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	1363503	1364246	744	PROBABLE METHYLTRANSFERASE (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_1364246_1363503		Predicted O-methyltransferase		CDS	putative O-methyltransferase MSMEG_5073			
+	1364554	1365186	633	"RNA polymerase sigma-70 factor, ECF subfamily"	peg	gi|57116681|ref|NC_000962.2|_1364590_1365186		RNA polymerase, sigma 29 subunit, SigE		CDS	RNA polymerase sigma factor, sigma-70 family protein			
+	1365156	1365344	189	FIG00826611: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1365156_1365344					conserved hypothetical protein			
+	1365344	1365808	465	conserved hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1365344_1365808		hypothetical protein		CDS	conserved hypothetical protein			
+	1365887	1367461	1575	serine protease	peg	gi|57116681|ref|NC_000962.2|_1365887_1367461		Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain		CDS	trypsin family protein			
+	1367463	1367858	396	Twin-arginine translocation protein TatB	peg	gi|57116681|ref|NC_000962.2|_1367463_1367858		twin arginine-targeting protein translocase TatB		CDS	twin arginine-targeting protein translocase TatB		tatB	
-	1367891	1368721	831	"HAD-superfamily subfamily IIA hydrolase, hypothetical 2"	peg	gi|57116681|ref|NC_000962.2|_1368721_1367891		Predicted sugar phosphatases of the HAD superfamily		CDS	HAD hydrolase, IA, variant 1 family protein			
-	1368832	1370295	1464	"transmembrane protein, distant homology with ydbT"	peg	gi|57116681|ref|NC_000962.2|_1370295_1368832		Predicted membrane protein		CDS	bacterial PH domain protein			
-	1370292	1370807	516	"transmembrane protein, distant homology with ydbS"	peg	gi|57116681|ref|NC_000962.2|_1370807_1370292		Uncharacterized conserved protein		CDS	bacterial PH domain protein			
+	1370920	1371477	558	PUTATIVE LIPOPROTEIN LPQX	peg	gi|57116681|ref|NC_000962.2|_1371073_1371477		hypothetical protein		CDS	putative lipoprotein lpqX			
+	1371544	1371702	159	FIG00820789: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1371544_1371702					antitoxin Phd_YefM, type II toxin-antitoxin system family protein			
-	1371777	1372922	1146	Mrp protein homolog	peg	gi|57116681|ref|NC_000962.2|_1372922_1371777		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
-	1372962	1374197	1236	POSSIBLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1374107_1372962		Membrane-bound lytic murein transglycosylase B		CDS	transglycosylase SLT domain protein			
-	1374322	1374864	543	PROBABLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1374864_1374322		Predicted membrane protein		CDS	conserved hypothetical protein			
-	1374861	1376168	1308	Mg/Co/Ni transporter MgtE / CBS domain	peg	gi|57116681|ref|NC_000962.2|_1376150_1374861		Mg/Co/Ni transporter MgtE (contains CBS domain)		CDS	CBS domain protein			
-	1376230	1376526	297	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1376433_1376230		Domain of unknown function (DUF4190).		CDS	conserved hypothetical protein			
+	1376976	1377503	528	FIG00945083: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1377048_1377503		hypothetical protein		CDS	putative transmembrane protein			
+	1377524	1378930	1407	"Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE"	peg	gi|57116681|ref|NC_000962.2|_1377524_1378930		carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	bacterial extracellular solute-binding family protein			
+	1378927	1379850	924	"Maltose/maltodextrin ABC transporter, permease protein MalF"	peg	gi|57116681|ref|NC_000962.2|_1378984_1379850		carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
+	1379840	1380679	840	SugB	peg	gi|57116681|ref|NC_000962.2|_1379855_1380679		carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
+	1380684	1381865	1182	SugC	peg	gi|57116681|ref|NC_000962.2|_1380684_1381865		carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	ABC transporter family protein			
-	1381942	1383042	1101	Magnesium and cobalt transport protein CorA	peg	gi|57116681|ref|NC_000962.2|_1383042_1381942		magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)		CDS	magnesium and cobalt transport protein CorA		corA	
+	1383213	1384202	990	Malate dehydrogenase (EC 1.1.1.37)	peg	gi|57116681|ref|NC_000962.2|_1383213_1384202		malate dehydrogenase (NAD) (EC 1.1.1.37)	1.1.1.37	CDS	malate dehydrogenase family protein	1.1.1.-		
+	1384269	1384538	270	FIG00822111: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1384278_1384538		hypothetical protein		CDS	antitoxin VapB33		vapB33	
+	1384535	1384966	432	FIG00822247: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1384535_1384966		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC33			
-	1384989	1386677	1689	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1386677_1384989		PE family.		CDS	PE family protein			
+	1386734	1387717	984	Substrate-binding region of ABC-type glycine betaine transport system	peg	gi|57116681|ref|NC_000962.2|_1386734_1387717		Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)		CDS	substrate binding domain of ABC-type glycine betaine transport system family protein			
-	1387798	1388628	831	Short-chain type dehydrogenase/reductase	peg	gi|57116681|ref|NC_000962.2|_1388628_1387798		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
-	1388685	1388978	294	RelE/StbE replicon stabilization toxin	peg	gi|57116681|ref|NC_000962.2|_1388978_1388685		Cytotoxic translational repressor of toxin-antitoxin stability system		CDS	toxin RelE	3.1.-.-	relE	
-	1388975	1389244	270	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)	peg	gi|57116681|ref|NC_000962.2|_1389244_1388975		prevent-host-death family protein		CDS	antitoxin RelB		relB	
-	1389357	1393052	3696	Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) / 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	peg	gi|57116681|ref|NC_000962.2|_1393052_1389357		2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	4.1.1.71	CDS	oxoglutarate dehydrogenase (succinyl-transferring), E1 component	1.2.4.2	sucA	
-	1393194	1393982	789	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1393880_1393194		hypothetical protein		CDS	putative membrane protein			
-	1395821	1399240	3420	Superfamily I DNA and RNA helicases and helicase subunits	peg	gi|57116681|ref|NC_000962.2|_1399240_1395821		RecB family nuclease, putative, TM0106 family		CDS	recB nuclease, TM0106 family domain protein			
+	1394179	1395918	1740				drug resistance transporter, EmrB/QacA subfamily		CDS				
-	1399296	1399904	609	Putative lipoprotein lprE precursor	peg	gi|57116681|ref|NC_000962.2|_1399664_1399296		LppP/LprE lipoprotein.		CDS	lppP/LprE lipofamily protein			
+	1399777	1399935	159	FIG00820414: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1399777_1399935								
+	1399970	1401661	1692	Cold-shock DEAD-box protein A	peg	gi|57116681|ref|NC_000962.2|_1399970_1401661		ATP-dependent RNA helicase CsdA (EC 5.99.1.-)	3.6.4.13	CDS	helicase conserved C-terminal domain protein			
-	1402778	1403386	609	Possible oxidoreductase subunit	peg	gi|57116681|ref|NC_000962.2|_1403386_1402778		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	1401658	1402809	1152	Acyltransferase	peg	gi|57116681|ref|NC_000962.2|_1401658_1402809		Predicted acyltransferases		CDS	acyltransferase family protein			
-	1403386	1404591	1206	Cytochrome P450 130	peg	gi|57116681|ref|NC_000962.2|_1404591_1403386		Cytochrome P450		CDS	putative cytochrome P450 130			
-	1404717	1406084	1368	"""Glycolate oxidase, subunit GlcD"""	peg	gi|57116681|ref|NC_000962.2|_1406084_1404717		FAD/FMN-containing dehydrogenases		CDS	FAD binding domain protein			
-	1406081	1407340	1260	H+ antiporter integral membrane transport protein	peg	gi|57116681|ref|NC_000962.2|_1407340_1406081		Arabinose efflux permease		CDS	putative multidrug-efflux transporter Rv1258c/MT1297			
+	1407339	1408238	900	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1407339_1408238		Uracil-DNA glycosylase		CDS	uracil DNA glycosylase superfamily protein			
+	1408231	1409358	1128	Oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_1408231_1409358		2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases		CDS	FAD binding domain protein			
-	1409484	1409957	474	FIG029194: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1409933_1409484		deazaflavin-dependent nitroreductase family protein		CDS	deazaflavin-dependent oxidoreductase, nitroreductase family protein			
-	1409938	1410372	435	Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)	peg	gi|57116681|ref|NC_000962.2|_1410363_1409938		Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases		CDS	HIT family protein			
+	1410431	1411819	1389	Amidase (EC 3.5.1.4)	peg	gi|57116681|ref|NC_000962.2|_1410431_1411819		Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	amidase family protein			
+	1411894	1413087	1194	Adenylate cyclase (EC 4.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_1411906_1413087		Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	pH-sensitive adenylate cyclase Rv1264	4.6.1.1		
+	1413386	1413940	555	FIG00820425: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1413386_1413940		hypothetical protein		CDS	conserved hypothetical protein			
-	1413960	1415885	1926	Serine/threonine protein kinase (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_1415885_1413960		Serine/threonine protein kinase	2.7.11.1	CDS	putative serine/threonine-protein kinase pknH			
-	1416181	1417347	1167	Transcriptional regulatory protein EmbR	peg	gi|57116681|ref|NC_000962.2|_1417347_1416181		DNA-binding transcriptional activator of the SARP family		CDS	putative regulatory protein embR			
-	1417395	1417646	252	FIG00821408: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1417646_1417395					hypothetical protein			
-	1417658	1418356	699	FIG00820366: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1418356_1417658		Peptidase_C39 like family.		CDS	peptidase_C39 like family protein			
-	1418579	1418953	375	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1418953_1418579		Domain of unknown function (DUF4189).		CDS	protein Rv1269c/MT1307			
-	1419014	1419748	735	Lipoprotein LprA	peg	gi|57116681|ref|NC_000962.2|_1419748_1419014		Protein of unknown function (DUF1396).		CDS	putative lipoprotein lprA			
-	1419961	1420302	342	FIG00820785: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1420302_1419961		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
-	1420410	1422254	1845	Lipid A export ATP-binding/permease protein MsbA	peg	gi|57116681|ref|NC_000962.2|_1422215_1420410		ABC-type multidrug transport system, ATPase and permease components		CDS	ABC transporter family protein			
-	1422302	1424050	1749	ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_1424050_1422302		ABC-type multidrug transport system, ATPase and permease components		CDS	ABC transporter family protein			
+	1424197	1424754	558	Lipoprotein LprB	peg	gi|57116681|ref|NC_000962.2|_1424230_1424754		Protein of unknown function (DUF3558).		CDS	conserved hypothetical protein			
+	1424751	1425293	543	Putative lipoprotein LprC precursor	peg	gi|57116681|ref|NC_000962.2|_1424751_1425293		Protein of unknown function (DUF3558).		CDS	conserved hypothetical protein			
-	1425438	1425944	507	Phosphohistidine phosphatase SixA	peg	gi|57116681|ref|NC_000962.2|_1425944_1425438		Phosphohistidine phosphatase SixA	3.1.3.-	CDS	histidine phosphatase super family protein			
+	1426266	1427417	1152	DNA double-strand break repair protein Mre11	peg	gi|57116681|ref|NC_000962.2|_1426266_1427417		DNA repair exonuclease		CDS	calcineurin-like phosphoesterase family protein			
+	1427414	1430041	2628	DNA double-strand break repair Rad50 ATPase	peg	gi|57116681|ref|NC_000962.2|_1427414_1430041		AAA domain.		CDS	AAA domain protein			
+	1430062	1431648	1587	Choline dehydrogenase (EC 1.1.99.1)	peg	gi|57116681|ref|NC_000962.2|_1430086_1431648		Choline dehydrogenase and related flavoproteins		CDS	GMC oxidoreductase family protein			
-	1431665	1433302	1638	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"	peg	gi|57116681|ref|NC_000962.2|_1433302_1431665		ABC-type dipeptide transport system, periplasmic component		CDS	bacterial extracellular solute-binding s, 5 Middle family protein			
-	1433433	1435271	1839	"Probable ABC transport protein, ATP-binding component"	peg	gi|57116681|ref|NC_000962.2|_1435271_1433433		oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	nickel import ATP-binding protein NikE	3.6.3.24	nikE	
-	1435268	1436143	876	Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	peg	gi|57116681|ref|NC_000962.2|_1436143_1435268		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	binding--dependent transport system inner membrane component family protein			
-	1436140	1437117	978	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	peg	gi|57116681|ref|NC_000962.2|_1437117_1436140		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	binding--dependent transport system inner membrane component family protein			
+	1437324	1437815	492	Carbonic anhydrase (EC 4.2.1.1)	peg	gi|57116681|ref|NC_000962.2|_1437324_1437815		Carbonic anhydrase	4.2.1.1	CDS	carbonic anhydrase family protein			
+	1437909	1438907	999	Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	peg	gi|57116681|ref|NC_000962.2|_1437927_1438907		sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	2.7.7.4	CDS	sulfate adenylyltransferase, small subunit	2.7.7.4	cysD	
+	1438907	1440751	1845	Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25)	peg	gi|57116681|ref|NC_000962.2|_1438907_1440751		adenylylsulfate kinase (EC 2.7.1.25)/sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)	2.7.7.4, 2.7.1.25	CDS	bifunctional enzyme CysN/CysC	2.7.1.25	cysNC	
+	1440805	1441290	486	"Predicted transcriptional regulator of sulfate adenylyltransferase, Rrf2 family"	peg	gi|57116681|ref|NC_000962.2|_1440835_1441290		transcriptional regulator, BadM/Rrf2 family		CDS	rrf2 family protein			
+	1441348	1442718	1371	Putative esterase	peg	gi|57116681|ref|NC_000962.2|_1441348_1442718		Predicted esterase		CDS	phage Tail Protein X family protein			
+	1442767	1443399	633	FIG00820436: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1442773_1443399		hypothetical protein		CDS	conserved hypothetical protein			
-	1443482	1444885	1404	FIG00820284: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1444885_1443482		Predicted membrane protein		CDS	conserved hypothetical protein			
+	1445004	1445372	369	"Mb1322, -, len: 104 aa. Equivalent to Rv1290A, len: 104 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 104 aa overlap). Hypothetical unknown protein, equivalent to AAK45590 from Mycobacterium tuberculosis strain CDC1551 (122 aa) but shorter 18 aa."	peg	gi|57116681|ref|NC_000962.2|_1445217_1445372		hypothetical protein		CDS	conserved hypothetical protein			
-	1445499	1445834	336	FIG00823516: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1445834_1445499		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
+	1446379	1448031	1653	Arginyl-tRNA synthetase (EC 6.1.1.19)	peg	gi|57116681|ref|NC_000962.2|_1446379_1448031		arginyl-tRNA synthetase (EC 6.1.1.19)	6.1.1.19	CDS	arginine--tRNA ligase	6.1.1.19	argS	
+	1448028	1449371	1344	Diaminopimelate decarboxylase (EC 4.1.1.20)	peg	gi|57116681|ref|NC_000962.2|_1448094_1449371		diaminopimelate decarboxylase (EC 4.1.1.20)	4.1.1.20	CDS	diaminopimelate decarboxylase	4.1.1.20	lysA	
+	1449375	1450700	1326	Homoserine dehydrogenase (EC 1.1.1.3)	peg	gi|57116681|ref|NC_000962.2|_1449375_1450700		homoserine dehydrogenase (EC 1.1.1.3)	1.1.1.3	CDS	homoserine dehydrogenase	1.1.1.3	hom	
+	1450697	1451779	1083	Threonine synthase (EC 4.2.3.1)	peg	gi|57116681|ref|NC_000962.2|_1450697_1451779		L-threonine synthase (EC 4.2.3.1)	4.2.3.1	CDS	threonine synthase	4.2.3.1	thrC	
+	1451779	1452003	225	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1451779_1452003		hypothetical protein		CDS	hypothetical protein			
+	1451997	1452947	951	Homoserine kinase (EC 2.7.1.39)	peg	gi|57116681|ref|NC_000962.2|_1451997_1452947		homoserine kinase (EC 2.7.1.39)	2.7.1.39	CDS	homoserine kinase	2.7.1.39	thrB	
+	1452970	1453207	238							conserved hypothetical protein			
-	1454970	1455164	195	unknown	peg	gi|57116681|ref|NC_000962.2|_1455164_1454970					conserved hypothetical protein			
+	1453204	1455012	1809	Transcription termination factor Rho	peg	gi|57116681|ref|NC_000962.2|_1453204_1455012		transcription termination factor Rho		CDS	transcription termination factor Rho	3.6.4.-	rho	
+	1455163	1455405	243	"LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent"	peg	gi|57116681|ref|NC_000962.2|_1455262_1455405		LSU ribosomal protein L31P		CDS	ribosomal protein L31		rpmE	
+	1455495	1456568	1074	Peptide chain release factor 1	peg	gi|57116681|ref|NC_000962.2|_1455495_1456568		bacterial peptide chain release factor 1 (bRF-1)		CDS	peptide chain release factor 1		prfA	
+	1456565	1457542	978	"Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2"	peg	gi|57116681|ref|NC_000962.2|_1456628_1457542		HemK family putative methylases	2.1.1.-	CDS	methyltransferase, HemK family protein			
+	1457558	1458211	654	TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	peg	gi|57116681|ref|NC_000962.2|_1457558_1458211		translation factor SUA5		CDS	telomere recombination family protein			
+	1458295	1459509	1215	Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	peg	gi|57116681|ref|NC_000962.2|_1458295_1459509		UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase		CDS	glycosyl transferase 4 family protein			
+	1459766	1460251	486	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1459766_1460251		ATP synthase I chain.		CDS	ATP synthase I chain family protein			
+	1460244	1460996	753	ATP synthase A chain (EC 3.6.3.14)	peg	gi|57116681|ref|NC_000962.2|_1460244_1460996		ATP synthase F0 subcomplex A subunit	3.6.3.14	CDS	ATP synthase F0, A subunit	3.6.3.14	atpB	
+	1461045	1461290	246	ATP synthase C chain (EC 3.6.3.14)	peg	gi|57116681|ref|NC_000962.2|_1461045_1461290		ATP synthase F0 subcomplex C subunit	3.6.3.14	CDS	ATP synthase F0, C subunit	3.6.3.14	atpE	
+	1461321	1461836	516	ATP synthase B chain (EC 3.6.3.14)	peg	gi|57116681|ref|NC_000962.2|_1461321_1461836		F0F1-type ATP synthase, subunit b	3.6.3.14	CDS	ATP synthase B/B' CF family protein			
+	1461843	1463183	1341	ATP synthase B' chain (EC 3.6.3.14) / ATP synthase delta chain (EC 3.6.3.14)	peg	gi|57116681|ref|NC_000962.2|_1461843_1463183		ATP synthase F1 subcomplex delta subunit	3.6.3.14	CDS	ATP synthase F1, delta subunit	3.6.3.14	atpH	
+	1463228	1464877	1650	ATP synthase alpha chain (EC 3.6.3.14)	peg	gi|57116681|ref|NC_000962.2|_1463228_1464877		ATP synthase F1 subcomplex alpha subunit	3.6.3.14	CDS	ATP synthase F1, alpha subunit	3.6.3.14	atpA	
+	1464884	1465801	918	ATP synthase gamma chain (EC 3.6.3.14)	peg	gi|57116681|ref|NC_000962.2|_1464884_1465801		ATP synthase F1 subcomplex gamma subunit	3.6.3.14	CDS	ATP synthase F1, gamma subunit	3.6.3.14	atpG	
+	1465841	1467301	1461	ATP synthase beta chain (EC 3.6.3.14)	peg	gi|57116681|ref|NC_000962.2|_1465841_1467301		ATP synthase, F1 beta subunit	3.6.3.14	CDS	ATP synthase F1, beta subunit	3.6.3.14	atpD	
+	1467315	1467680	366	ATP synthase epsilon chain (EC 3.6.3.14)	peg	gi|57116681|ref|NC_000962.2|_1467315_1467680		ATP synthase, F1 epsilon subunit (delta in mitochondria)	3.6.3.14	CDS	ATP synthase F1, epsilon subunit	3.6.3.14	atpC	
+	1467700	1468131	432	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1467700_1468131		Protein of unknown function (DUF2550).		CDS	conserved hypothetical protein			
-	1468171	1469505	1335	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1469505_1468171		Transposase and inactivated derivatives		CDS	transposase family protein			
-	1469671	1470252	582	Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	peg	gi|57116681|ref|NC_000962.2|_1470252_1469671		ATP:cob(I)alamin adenosyltransferase		CDS	cob(I)yrinic acid a,c-diamide adenosyltransferase	2.5.1.17		
+	1470321	1471577	1257	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	peg	gi|57116681|ref|NC_000962.2|_1470321_1471577		UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	2.5.1.7	CDS	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	2.5.1.7	murA	
+	1471867	1473280	1414										
+	1471847	1473382	1536										
+	1473661	1476794	3134										
+	1473658	1476795	3138										
-	1477134	1477631	498	Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	peg	gi|57116681|ref|NC_000962.2|_1477631_1477134		O-6-methylguanine DNA methyltransferase	2.1.1.63	CDS	methylated-DNA-[]-cysteine S-methyltransferase family protein	2.1.1.63		
-	1477628	1479118	1491	Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	peg	gi|57116681|ref|NC_000962.2|_1479118_1477628		DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	3.2.2.21	CDS	alkA N-terminal domain protein			
-	1479199	1480824	1626	Adenylate cyclase (EC 4.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_1480824_1479199		Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	HAMP domain protein			
-	1480894	1482501	1608	Adenylate cyclase (EC 4.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_1482501_1480894		Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	adenylate and Guanylate cyclase catalytic domain protein			
-	1482514	1484085	1572	Adenylate cyclase (EC 4.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_1484085_1482514		Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	HAMP domain protein			
+	1484288	1484959	672	FIG00996186: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1484288_1484959		Predicted nuclease of the RecB family		CDS	conserved hypothetical protein			
-	1485313	1485771	459	Methylmalonyl-CoA epimerase (EC 5.1.99.1); Ethylmalonyl-CoA epimerase	peg	gi|57116681|ref|NC_000962.2|_1485771_1485313		methylmalonyl-CoA epimerase (EC 5.1.99.1)		CDS	methylmalonyl-CoA epimerase	5.1.99.1	mce	
+	1485862	1487031	1170	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	peg	gi|57116681|ref|NC_000962.2|_1485862_1487031		acetyl-CoA acetyltransferases	2.3.1.9	CDS	putative acetyl-CoA acetyltransferase			
+	1487194	1488075	882	COG3118: Thioredoxin domain-containing protein EC-YbbN	peg	gi|57116681|ref|NC_000962.2|_1487194_1488075		Thioredoxin domain-containing protein		CDS	thioredoxin family protein			
-	1488154	1489965	1812	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1489965_1488154		PE family.		CDS	PE family protein			
-	1490117	1492312	2196	"1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)"	peg	gi|57116681|ref|NC_000962.2|_1492312_1490117		alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase	2.4.1.18	CDS	1,4-alpha-glucan branching enzyme	2.4.1.18	glgB	
-	1492320	1494425	2106	Putative glucanase glgE (EC 3.2.1.-)	peg	gi|57116681|ref|NC_000962.2|_1494425_1492320		Glycosidases		CDS	putative glucanase GlgE			
+	1494564	1497155	2592	Glycogen phosphorylase (EC 2.4.1.1)	peg	gi|57116681|ref|NC_000962.2|_1494564_1497155		alpha-glucan phosphorylases	2.4.1.1	CDS	alpha-glucan phosphorylases family protein	2.4.1.1	glgP	
-	1497195	1499171	1977	DinG family ATP-dependent helicase YoaA	peg	gi|57116681|ref|NC_000962.2|_1499165_1497195		Rad3-related DNA helicases	3.6.4.12	CDS	DEAD/DEAH box helicase family protein			
-	1499213	1500559	1347	Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	peg	gi|57116681|ref|NC_000962.2|_1500559_1499213		putative nicotinate phosphoribosyltransferase	2.4.2.11	CDS	nicotinate phosphoribosyltransferase family protein			
+	1500661	1500966	306	ATP-dependent Clp protease adaptor protein ClpS	peg	gi|57116681|ref|NC_000962.2|_1500670_1500966		Uncharacterized conserved protein		CDS	ATP-dependent Clp protease adaptor ClpS family protein			
+	1500992	1501582	591	Transcriptional regulatory protein	peg	gi|57116681|ref|NC_000962.2|_1501046_1501582		Domain of unknown function (DUF2017).		CDS	conserved hypothetical protein			
+	1501599	1502633	1035	possible hydrolase	peg	gi|57116681|ref|NC_000962.2|_1501599_1502633		L-aminopeptidase/D-esterase		CDS	peptidase S58 family protein			
+	1502668	1503081	414	Mec+	peg	gi|57116681|ref|NC_000962.2|_1502668_1503081		Predicted metal-dependent protease of the PAD1/JAB1 superfamily		CDS	cysO-cysteine peptidase		mec	
+	1503103	1503384	282	9.5 kDa culture filtrate antigen Cfp10A	peg	gi|57116681|ref|NC_000962.2|_1503103_1503384		molybdopterin synthase subunit MoaD (EC 2.8.1.12)		CDS	sulfur carrier protein CysO		cysO	
+	1503394	1504365	972	Cysteine synthase B (EC 2.5.1.47)	peg	gi|57116681|ref|NC_000962.2|_1503394_1504365		cysteine synthase (EC 2.5.1.47)	2.5.1.47	CDS	O-phosphoserine sulfhydrylase		cysM	
+	1504395	1505078	684	Rhomboid membrane family protein	peg	gi|57116681|ref|NC_000962.2|_1504464_1505078		Uncharacterized membrane protein (homolog of Drosophila rhomboid)		CDS	rhomboid family protein			
+	1505075	1505890	816	Glutamate racemase (EC 5.1.1.3)	peg	gi|57116681|ref|NC_000962.2|_1505075_1505890		glutamate racemase (EC 5.1.1.3)	5.1.1.3	CDS	glutamate racemase	5.1.1.3	murI	
+	1505980	1506738	759	Metal-dependent hydrolases of the beta-lactamase superfamily III	peg	gi|57116681|ref|NC_000962.2|_1506061_1506738		Metal-dependent hydrolases of the beta-lactamase superfamily III		CDS	beta-lactamase superfamily domain protein			
+	1506755	1507534	780	Ribonuclease PH (EC 2.7.7.56)	peg	gi|57116681|ref|NC_000962.2|_1506755_1507534		RNAse PH (EC 2.7.7.56)	2.7.7.56	CDS	ribonuclease PH	2.7.7.56	rph	
-	1508184	1508546	363	CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1508546_1508184		integral membrane protein		CDS	integral membrane domain protein			
+	1507582	1508187	606	"Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)"	peg	gi|57116681|ref|NC_000962.2|_1507582_1508187		non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	3.6.1.19	CDS	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	3.6.1.-	rdgB	
-	1508543	1508923	381	Lipoprotein LprD	peg	gi|57116681|ref|NC_000962.2|_1508881_1508543		Glucitol operon activator		CDS	conserved hypothetical protein			
+	1509034	1509288	255	Acyl carrier protein MbtL	peg	gi|57116681|ref|NC_000962.2|_1509034_1509288		Acyl carrier protein		CDS	acyl carrier protein MbtL		mbtL	
-	1509425	1509700	276	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1509700_1509425								
+	1509281	1510846	1566	acyl-CoA synthase	peg	gi|57116681|ref|NC_000962.2|_1509839_1510846		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.20	CDS	AMP-binding enzyme family protein			
-	1511973	1512605	633	Lysine N-acyltransferase mbtK (EC 2.3.1.-) (N-acyltransferase mbtK) (Mycobactin synthetase protein K)	peg	gi|57116681|ref|NC_000962.2|_1512605_1511973		Acetyltransferases, including N-acetylases of ribosomal proteins		CDS	lysine N-acyltransferase mbtK	2.3.1.-	mbtK	
+	1510846	1512006	1161	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	peg	gi|57116681|ref|NC_000962.2|_1510846_1512006		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	1513047	1515626	2580	ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_1513047_1515626		ABC-type multidrug transport system, ATPase and permease components	3.6.3.-	CDS	iron import ATP-binding/permease protein IrtA	3.6.3.-	irtA	
+	1515623	1517362	1740	ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_1515623_1517362		ABC-type multidrug transport system, ATPase and permease components	3.6.3.-	CDS	iron import ATP-binding/permease protein IrtB	3.6.3.-	irtB	
+	1517491	1518234	744	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|57116681|ref|NC_000962.2|_1517491_1518234		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.100	CDS	short chain dehydrogenase family protein			
+	1518288	1518560	273	FIG00821860: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1518288_1518560		hypothetical protein		CDS	conserved hypothetical protein			
+	1518763	1519134	372	FIG00831546: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1518763_1519134		hypothetical protein		CDS	conserved hypothetical protein			
-	1519200	1519985	786	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_1519985_1519200		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	1520005	1521876	1872	Sensory box/GGDEF family protein	peg	gi|57116681|ref|NC_000962.2|_1521876_1520005		diguanylate cyclase/phosphodiesterase with GAF sensor		CDS	diguanylate cyclase domain protein			
-	1521885	1524032	2148	Molybdopterin biosynthesis protein MoeY	peg	gi|57116681|ref|NC_000962.2|_1524032_1521885		Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2		CDS	nitroreductase family protein			
-	1524029	1524784	756	FIG00822688: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1524784_1524029		hypothetical protein		CDS	conserved hypothetical protein			
-	1525293	1526216	924	Sensory box/GGDEF family protein	peg	gi|57116681|ref|NC_000962.2|_1526159_1525293		FOG: EAL domain		CDS	EAL domain protein			
+	1526717	1530091	3375	"Adenylyl cyclase class-3/4/guanylyl cyclase / Disease resistance domain-containing protein / Tetratricopeptide repeat-containing protein / Transcriptional regulator, LuxR family"	peg	gi|57116681|ref|NC_000962.2|_1526717_1530091		Predicted ATPase		CDS	bacterial regulatory s, luxR family protein			
+	1530320	1530925	606	Adenylyl cyclase class-3/4/guanylyl cyclase	peg	gi|57116681|ref|NC_000962.2|_1530320_1530925		Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	conserved hypothetical protein			
-	1530973	1531209	237	FIG00821517: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1531197_1530973		hypothetical protein		CDS	conserved hypothetical protein			
+	1531348	1532370	1023	Oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_1531348_1532370		probable F420-dependent oxidoreductase, MSMEG_2256 family		CDS	putative F420-dependent oxidoreductase, MSMEG_2256 family protein			
-	1532443	1533633	1191	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1533633_1532443		PPE-repeat proteins		CDS	PPE family protein			
-	1533948	1534610	663	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1534610_1533948		hypothetical protein		CDS	conserved hypothetical protein			
-	1534607	1535392	786	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1535392_1534607		hypothetical protein		CDS	conserved hypothetical protein			
-	1535683	1537644	1962	"Serine phosphatase RsbU, regulator of sigma subunit"	peg	gi|57116681|ref|NC_000962.2|_1537644_1535683		PAS domain S-box		CDS	conserved hypothetical protein			
-	1537783	1538169	387	Anti-sigma factor antagonist	peg	gi|57116681|ref|NC_000962.2|_1538169_1537783		anti-anti-sigma factor		CDS	anti-anti-sigma factor family protein			
+	1538420	1539211	792	GTP pyrophosphokinase (EC 2.7.6.5)	peg	gi|57116681|ref|NC_000962.2|_1538420_1539211		Uncharacterized protein conserved in bacteria		CDS	region found in RelA / SpoT s family protein			
+	1539180	1539440	261	FIG00824301: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1539213_1539440		hypothetical protein		CDS	conserved hypothetical protein			
-	1539512	1540717	1206	Beta-lactamase class C and other penicillin binding proteins	peg	gi|57116681|ref|NC_000962.2|_1540717_1539512		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
+	1541020	1541805	786	Lipoprotein LprF	peg	gi|57116681|ref|NC_000962.2|_1541020_1541805		Protein of unknown function (DUF1396).		CDS	conserved hypothetical protein			
-	1541994	1542878	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1542878_1541994		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	1542929	1543255	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1543255_1542929		Transposase and inactivated derivatives		CDS	transposase family protein			
+	1543359	1544828	1470	Desaturase-related protein	peg	gi|57116681|ref|NC_000962.2|_1543443_1544828		Fatty acid desaturase		CDS	fatty acid desaturase family protein			
+	1544825	1546006	1182	Chalcone synthase (EC 2.3.1.74)	peg	gi|57116681|ref|NC_000962.2|_1544894_1546006		Predicted naringenin-chalcone synthase		CDS	alpha-pyrone synthesis polyketide synthase-like Pks18	2.3.1.-	pks18	
+	1546012	1546992	981	Glycolipid sulfotransferase	peg	gi|57116681|ref|NC_000962.2|_1546012_1546992		Sulfotransferase domain.		CDS	glycolipid sulfotransferase Rv1373	2.8.2.-		
+	1547832	1549151	1320	FIG00820054: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1547895_1549151		uncharacterized domain		CDS	conserved hypothetical protein			
-	1550579	1551259	681				Methyltransferase domain.		CDS				
+	1549148	1550641	1494	FIG029924: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1549148_1550641		Uncharacterized conserved protein		CDS	tfuA-like family protein			
-	1551228	1552517	1290	HNH nuclease	peg	gi|57116681|ref|NC_000962.2|_1552517_1551228		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
+	1552654	1553235	582	Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	peg	gi|57116681|ref|NC_000962.2|_1552654_1553235		Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase	2.4.2.9	CDS	bifunctional protein pyrR	2.4.2.9	pyrR	
+	1553232	1554191	960	Aspartate carbamoyltransferase (EC 2.1.3.2)	peg	gi|57116681|ref|NC_000962.2|_1553232_1554191		aspartate carbamoyltransferase (EC 2.1.3.2)	2.1.3.2	CDS	aspartate carbamoyltransferase	2.1.3.2	pyrB	
+	1554188	1555480	1293	Dihydroorotase (EC 3.5.2.3)	peg	gi|57116681|ref|NC_000962.2|_1554194_1555480		dihydroorotase (EC 3.5.2.3)	3.5.2.3	CDS	dihydroorotase, multifunctional complex type domain protein	3.5.2.3	pyrC	
+	1555477	1555974	498	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1555477_1555974		hypothetical protein		CDS	putative eXPORT/MEMBRANE PROTEIN			
+	1555971	1557101	1131	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	peg	gi|57116681|ref|NC_000962.2|_1555971_1557101		carbamoyl-phosphate synthase small subunit	6.3.5.5	CDS	carbamoyl-phosphate synthase, small subunit	6.3.5.5	carA	
+	1557101	1560448	3348	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	peg	gi|57116681|ref|NC_000962.2|_1557101_1560448		carbamoyl-phosphate synthase large subunit	6.3.5.5	CDS	carbamoyl-phosphate synthase, large subunit	6.3.5.5	carB	
+	1560445	1561269	825	Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	peg	gi|57116681|ref|NC_000962.2|_1560445_1561269		orotidine-5'-phosphate decarboxylase (EC 4.1.1.23)	4.1.1.23	CDS	orotidine 5'-phosphate decarboxylase	4.1.1.23	pyrF	
+	1561464	1561772	309	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1561464_1561772		PE family.		CDS	PE family protein			
+	1561769	1563388	1620	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1561769_1563388		PPE-repeat proteins		CDS	PPE family protein			
-	1563443	1563694	252							putative predicted protein			
-	1563486	1563707	222	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1563707_1563486								
+	1563949	1564266	318	integration host factor	peg	gi|57116681|ref|NC_000962.2|_1563949_1564266		hypothetical protein		CDS	putative integration host factor			
+	1564401	1565027	627	Guanylate kinase (EC 2.7.4.8)	peg	gi|57116681|ref|NC_000962.2|_1564467_1565027		guanylate kinase (EC 2.7.4.8)	2.7.4.8	CDS	guanylate kinase	2.7.4.8	gmk	
+	1565093	1565425	333	DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	peg	gi|57116681|ref|NC_000962.2|_1565093_1565425		DNA-directed RNA polymerase, omega subunit	2.7.7.6	CDS	DNA-directed RNA polymerase, omega subunit	2.7.7.6	rpoZ	
+	1565441	1566697	1257	Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	peg	gi|57116681|ref|NC_000962.2|_1565441_1566697		Phosphopantothenate-cysteine ligase (EC 6.3.2.5)/Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	4.1.1.36, 6.3.2.5	CDS	phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase	4.1.1.36	coaBC	
+	1566825	1568036	1212	S-adenosylmethionine synthetase (EC 2.5.1.6)	peg	gi|57116681|ref|NC_000962.2|_1566825_1568036		methionine adenosyltransferase (EC 2.5.1.6)	2.5.1.6	CDS	methionine adenosyltransferase	2.5.1.6	metK	
-	1568109	1569587	1479	Cyclohexanone monooxygenase (EC 1.14.13.22)	peg	gi|57116681|ref|NC_000962.2|_1569587_1568109		Predicted flavoprotein involved in K+ transport	1.14.13.22	CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
-	1569584	1570969	1386	Cytochrome P450 132	peg	gi|57116681|ref|NC_000962.2|_1570969_1569584		Cytochrome P450		CDS	cytochrome P450 family protein			
+	1571047	1572081	1035	"Transcriptional regulator, AraC family"	peg	gi|57116681|ref|NC_000962.2|_1571086_1572081		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
-	1572127	1573857	1731	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1573857_1572127		PE family.		CDS	PE family protein			
-	1574112	1574513	402	FIG00821201: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1574513_1574112		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC19			
-	1574510	1574767	258	"""Transcriptional regulator, CopG family"""	peg	gi|57116681|ref|NC_000962.2|_1574767_1574510		Ribbon-helix-helix protein, copG family.		CDS	ribbon-helix-helix , copG family protein			
-	1574850	1575809	960	Esterase/lipase	peg	gi|57116681|ref|NC_000962.2|_1575770_1574850		Esterase/lipase		CDS	hydrolase			
-	1575834	1576796	963	Esterase/lipase	peg	gi|57116681|ref|NC_000962.2|_1576796_1575834		Esterase/lipase		CDS	hydrolase			
+	1576819	1577532	714	YhhN family membrane protein	peg	gi|57116681|ref|NC_000962.2|_1576837_1577532		Predicted membrane protein		CDS	yhhN-like family protein			
+	1577604	1579580	1977	Helicase PriA essential for oriC/DnaA-independent DNA replication	peg	gi|57116681|ref|NC_000962.2|_1577604_1579580		replication restart DNA helicase PriA	3.6.4.-	CDS	putative primosomal protein N'			
-	1579598	1580422	825	Methyltransferase	peg	gi|57116681|ref|NC_000962.2|_1580422_1579598		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	ubiE/COQ5 methyltransferase family protein			
+	1580546	1581073	528	"Transcriptional regulator, MarR family"	peg	gi|57116681|ref|NC_000962.2|_1580630_1581073		Transcriptional regulators		CDS	marR family protein			
-	1581145	1581969	825	Methyltransferase	peg	gi|57116681|ref|NC_000962.2|_1581969_1581145		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
+	1582166	1583104	939	Methionyl-tRNA formyltransferase (EC 2.1.2.9)	peg	gi|57116681|ref|NC_000962.2|_1582166_1583104		methionyl-tRNA formyltransferase (EC 2.1.2.9)	2.1.2.9	CDS	methionyl-tRNA formyltransferase	2.1.2.9	fmt	
+	1583101	1584474	1374	16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176)	peg	gi|57116681|ref|NC_000962.2|_1583101_1584474		tRNA and rRNA cytosine-C5-methylases	2.1.1.176	CDS	nusB family protein			
+	1584499	1585197	699	Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	peg	gi|57116681|ref|NC_000962.2|_1584499_1585197		ribulose-5-phosphate 3-epimerase (EC 5.1.3.1)	5.1.3.1	CDS	ribulose-phosphate 3-epimerase	5.1.3.1	rpe	
-	1586210	1587766	1557	EmrB/QacA family drug resistance transporter	peg	gi|57116681|ref|NC_000962.2|_1587766_1586210		Arabinose efflux permease		CDS	sugar (and other) transporter family protein			
+	1585194	1586213	1020	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	peg	gi|57116681|ref|NC_000962.2|_1585194_1586213		riboflavin biosynthesis protein RibD	1.1.1.193, 3.5.4.26	CDS	riboflavin biosynthesis protein RibD	3.5.4.26	ribD	
-	1587772	1588491	720	Lipoprotein LprG	peg	gi|57116681|ref|NC_000962.2|_1588482_1587772		Protein of unknown function (DUF1396).		CDS	lipoprotein lprG		lprG	
+	1588567	1589172	606	Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	peg	gi|57116681|ref|NC_000962.2|_1588567_1589172		riboflavin synthase alpha chain (EC 2.5.1.9)	2.5.1.9	CDS	riboflavin synthase, alpha subunit	2.5.1.9	ribE	
+	1589386	1589901	516	METAL-ACTIVATED PYRIDOXAL ENZYME	peg	gi|57116681|ref|NC_000962.2|_1589386_1589901		Predicted amino acid aldolase or racemase		CDS	alanine racemase, N-terminal domain protein			
+	1589891	1590292	402	METAL-ACTIVATED PYRIDOXAL ENZYME	peg	gi|57116681|ref|NC_000962.2|_1589891_1590292		Predicted amino acid aldolase or racemase		CDS	putative serine dehydratase domain protein			
+	1590397	1591674	1278	"3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)"	peg	gi|57116681|ref|NC_000962.2|_1590406_1591674		GTP cyclohydrolase II (EC 3.5.4.25)/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	3.5.4.25, 4.1.99.12	CDS	GTP cyclohydrolase II	3.5.4.25	ribA	
+	1591671	1592153	483	"6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)"	peg	gi|57116681|ref|NC_000962.2|_1591689_1592153		6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	2.5.1.78	CDS	6,7-dimethyl-8-ribityllumazine synthase	6.3.3.-	ribH	
+	1592150	1592614	465	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_1592150_1592614		Protein of unknown function (DUF2581).		CDS	conserved hypothetical protein			
+	1592696	1593325	630	Lipoprotein LprH	peg	gi|57116681|ref|NC_000962.2|_1592696_1593325		PknH-like extracellular domain.		CDS	pknH-like extracellular domain protein			
+	1593505	1593978	474	FIG00821636: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1593505_1593978		Ricin-type beta-trefoil lectin domain.		CDS	ricin-type beta-trefoil lectin domain protein			
+	1594099	1595982	1884	Excinuclease ABC subunit C	peg	gi|57116681|ref|NC_000962.2|_1594099_1595982		Excinuclease ABC subunit C		CDS	excinuclease ABC subunit C	3.1.25.-	uvrC	
+	1595979	1596884	906	FIG000506: Predicted P-loop-containing kinase	peg	gi|57116681|ref|NC_000962.2|_1595979_1596884		Predicted P-loop-containing kinase		CDS	P-loop ATPase family protein			
+	1596881	1597909	1029	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1596881_1597909		conserved hypothetical protein, cofD-related		CDS	conserved hypothetical family protein			
+	1597900	1598883	984	FIG001886: Cytoplasmic hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1597900_1598883		Uncharacterized protein conserved in bacteria		CDS	putative sporulation transcription regulator whiA			
-	1598893	1599501	609	FIG00820381: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1599501_1598893		hypothetical protein		CDS	conserved hypothetical protein			
+	1599718	1601037	1320	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_1599718_1601037		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		
-	1601059	1602321	1263	Lipase (EC 3.1.1.3)	peg	gi|57116681|ref|NC_000962.2|_1602321_1601059		Esterase/lipase		CDS	alpha/beta hydrolase fold family protein			
-	1602321	1603928	1608	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1603928_1602321		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	AMP-binding enzyme family protein			
-	1603932	1604759	828	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1604759_1603932		1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	diacylglycerol acyltransferase family protein			
+	1604878	1606146	1269	"""Putative transcriptional regulator, PucR family"""	peg	gi|57116681|ref|NC_000962.2|_1604878_1606146		Regulator of polyketide synthase expression		CDS	pucR C-terminal helix-turn-helix domain protein			
+	1606386	1607972	1587	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1606386_1607972		PE-PPE domain./PE family.		CDS	PE family protein			
+	1608083	1609852	1770	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1608083_1609852		Transmembrane protein of unknown function (DUF3556).		CDS	conserved hypothetical protein			
-	1611222	1611374	153	FIG00823623: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1611374_1611222					hypothetical protein			
+	1609849	1611270	1422	Phytoene dehydrogenase and related proteins	peg	gi|57116681|ref|NC_000962.2|_1609849_1611270		Phytoene dehydrogenase and related proteins		CDS	FAD binding domain protein			
+	1611434	1612249	816	FIG00826591: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1611434_1612249		Uncharacterized protein conserved in bacteria		CDS	L,D-transpeptidase catalytic domain protein			
-	1612342	1612950	609	"""Probable conserved Proline, Glycine, Valine-rich secreted protein"""	peg	gi|57116681|ref|NC_000962.2|_1612950_1612342					putative conserved glycine, proline and valine-rich secreted protein			
+	1612198	1612872	675				hypothetical protein		CDS				
+	1613307	1614326	1020	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	peg	gi|57116681|ref|NC_000962.2|_1613307_1614326		glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12)	1.2.1.12	CDS	glyceraldehyde-3-phosphate dehydrogenase, type I	1.2.1.-	gap	
+	1614329	1615567	1239	Phosphoglycerate kinase (EC 2.7.2.3)	peg	gi|57116681|ref|NC_000962.2|_1614329_1615567		phosphoglycerate kinase (EC 2.7.2.3)	2.7.2.3	CDS	phosphoglycerate kinase	2.7.2.3	pgk	
+	1615564	1616349	786	Triosephosphate isomerase (EC 5.3.1.1)	peg	gi|57116681|ref|NC_000962.2|_1615564_1616349		triosephosphate isomerase (EC 5.3.1.1)	5.3.1.1	CDS	triose-phosphate isomerase	5.3.1.1	tpiA	
-	1616365	1616592	228	Transcriptional regulatory protein	peg	gi|57116681|ref|NC_000962.2|_1616592_1616365		hypothetical protein		CDS	hypothetical protein			
-	1616961	1617386	426	FIG00822160: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1617386_1616961		SnoaL-like domain.		CDS	snoaL-like polyketide cyclase family protein			
-	1617460	1617621	162	FIG00820520: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1617621_1617460					hypothetical protein			
+	1617565	1617729	165				hypothetical protein		CDS				
+	1617717	1618070	354	Preprotein translocase subunit SecG (TC 3.A.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_1617726_1618070		protein translocase, SecG subunit		CDS	preprotein translocase, SecG subunit		secG	
-	1618209	1619684	1476	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1619657_1618209		PE family.		CDS	PE family protein			
+	1619791	1622091	2301	Biotin sulfoxide reductase (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_1619791_1622091		molybdopterin guanine dinucleotide-containing S/N-oxide reductases	1.-	CDS	molybdopterin guanine dinucleotide-containing S/N-oxide reductases family protein			
-	1622207	1622692	486	FIG00824621: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1622692_1622207		Uncharacterized conserved protein		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	1622768	1623007	240	FIG00820605: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1622768_1623007		hypothetical protein		CDS	hypothetical protein			
-	1623287	1623697	411	FIG00820198: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1623658_1623287		Uncharacterised protein family (UPF0184).		CDS	conserved hypothetical protein			
-	1623714	1624457	744	"6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type"	peg	gi|57116681|ref|NC_000962.2|_1624457_1623714		6-phosphogluconolactonase (EC 3.1.1.31)	3.1.1.31	CDS	6-phosphogluconolactonase	3.1.1.31	pgl	
-	1624454	1625365	912	"OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial"	peg	gi|57116681|ref|NC_000962.2|_1625365_1624454		opcA protein		CDS	glucose-6-phosphate dehydrogenase assembly protein OpcA		opcA	
-	1625418	1626962	1545	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	peg	gi|57116681|ref|NC_000962.2|_1626962_1625418		glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	1.1.1.49	CDS	glucose-6-phosphate dehydrogenase	1.1.1.49	zwf	
-	1626959	1628080	1122	Transaldolase (EC 2.2.1.2)	peg	gi|57116681|ref|NC_000962.2|_1628080_1626959		transaldolase (EC 2.2.1.2)	2.2.1.2	CDS	transaldolase	2.2.1.2	tal	
-	1628097	1630199	2103	Transketolase (EC 2.2.1.1)	peg	gi|57116681|ref|NC_000962.2|_1630199_1628097		transketolase (EC 2.2.1.1)	2.2.1.1	CDS	transketolase	2.2.1.1	tkt	
-	1630391	1630606	216	FIG00825039: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1630606_1630391					putative domain protein			
-	1630638	1634627	3990	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_1634627_1630638		PE family.		CDS	PE family protein			
+	1635029	1635955	927	"Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB"	peg	gi|57116681|ref|NC_000962.2|_1635077_1635955		protoheme IX farnesyltransferase	2.5.1.-	CDS	protoheme IX farnesyltransferase	2.5.1.-	cyoE	
-	1636004	1638229	2226	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_1638229_1636004		PE family.		CDS	PE family protein			
+	1638348	1639646	1299	FIG00822825: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1638381_1639646		Regulator of polyketide synthase expression		CDS	pucR C-terminal helix-turn-helix domain protein			
-	1639674	1640660	987	Quinone oxidoreductase (EC 1.6.5.5)	peg	gi|57116681|ref|NC_000962.2|_1640660_1639674		NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	zinc-binding dehydrogenase family protein			
-	1641493	1642425	933	Cytochrome oxidase assembly protein	peg	gi|57116681|ref|NC_000962.2|_1642407_1641493		Uncharacterized protein required for cytochrome oxidase assembly		CDS	cytochrome oxidase assembly family protein			
+	1640680	1641543	864				hypothetical protein		CDS				
-	1642537	1643322	786	"ABC-type multidrug transport system, permease component"	peg	gi|57116681|ref|NC_000962.2|_1643322_1642537		ABC transporter efflux protein, DrrB family		CDS	ABC-2 transporter family protein			
-	1643319	1644260	942	"ABC-type multidrug transport system, ATPase component"	peg	gi|57116681|ref|NC_000962.2|_1644260_1643319		ABC-type multidrug transport system, ATPase component		CDS	ABC transporter family protein			
-	1644363	1646138	1776	POSSIBLE CONSERVED INTEGRAL MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1646138_1644363		hypothetical protein	2.4.1.-	CDS	putative membrane protein			
+	1646258	1646992	735	Iron-sulfur cluster regulator SufR	peg	gi|57116681|ref|NC_000962.2|_1646327_1646992		Predicted transcriptional regulator		CDS	bacterial regulatory , arsR family protein			
+	1646989	1649529	2541	Iron-sulfur cluster assembly protein SufB @ intein-containing	peg	gi|57116681|ref|NC_000962.2|_1646989_1649529		ABC-type transport system involved in Fe-S cluster assembly, permease component		CDS	feS assembly protein SufB		sufB	
+	1649526	1650719	1194	Iron-sulfur cluster assembly protein SufD	peg	gi|57116681|ref|NC_000962.2|_1649526_1650719		Iron-regulated ABC transporter permease protein SufD		CDS	feS assembly protein SufD		sufD	
+	1650716	1651516	801	Iron-sulfur cluster assembly ATPase protein SufC	peg	gi|57116681|ref|NC_000962.2|_1650716_1651516		FeS assembly ATPase SufC		CDS	feS assembly ATPase SufC		sufC	
+	1651518	1652771	1254	"Cysteine desulfurase (EC 2.8.1.7), SufS subfamily"	peg	gi|57116681|ref|NC_000962.2|_1651518_1652771		cysteine desulfurase (EC 2.8.1.7)	4.4.1.16, 2.8.1.7	CDS	cysteine desulfurase, SufS family protein		sufS	
+	1652768	1653256	489	"Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2"	peg	gi|57116681|ref|NC_000962.2|_1652768_1653256		SUF system FeS assembly protein, NifU family		CDS	SUF system FeS assembly protein, NifU family			
+	1653231	1653578	348	PaaD-like protein (DUF59) involved in Fe-S cluster assembly	peg	gi|57116681|ref|NC_000962.2|_1653231_1653578		Predicted metal-sulfur cluster biosynthetic enzyme		CDS	conserved hypothetical protein			
-	1653673	1655502	1830	acyl-CoA dehydrogenase FadE15	peg	gi|57116681|ref|NC_000962.2|_1655502_1653673		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
-	1655609	1656721	1113	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1656721_1655609		PE family.		CDS	PE family protein			
+	1656963	1658936	1974	"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)"	peg	gi|57116681|ref|NC_000962.2|_1657074_1658936		heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	3.6.3.-	CDS	cadmium-translocating P-type ATPase	3.6.3.3	cadA	
+	1658980	1659354	375	Thioredoxin TrxA	peg	gi|57116681|ref|NC_000962.2|_1658980_1659354		Thioredoxin domain-containing protein		CDS	thioredoxin family protein			
+	1659370	1659741	372	Thioredoxin TrxB1	peg	gi|57116681|ref|NC_000962.2|_1659370_1659741		thioredoxin		CDS	thioredoxin		trxA	
+	1659763	1660620	858	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_1659817_1660620		Enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	enoyl-CoA hydratase/isomerase family protein			
+	1660656	1662284	1629	ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_1660656_1662284		ATPase components of ABC transporters with duplicated ATPase domains		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
+	1662381	1662572	192	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1662381_1662572		hypothetical protein		CDS	putative transcriptional regulatory protein			
-	1662641	1663204	564	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_1663204_1662641		transcriptional regulator, TetR family		CDS	HTH-type transcriptional repressor AcnR		acnR	
-	1663215	1666046	2832	Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)	peg	gi|57116681|ref|NC_000962.2|_1666031_1663215		aconitase (EC 4.2.1.3)	4.2.1.3	CDS	aconitate hydratase 1	4.2.1.3	acnA	
+	1666204	1666764	561	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1666204_1666764		hypothetical protein		CDS	putative conserved membrane protein			
+	1666990	1668408	1419	NLP/P60 family protein	peg	gi|57116681|ref|NC_000962.2|_1667068_1668408		Cell wall-associated hydrolases (invasion-associated proteins)		CDS	nlpC/P60 family protein			
+	1668419	1669144	726	Invasion protein	peg	gi|57116681|ref|NC_000962.2|_1668419_1669144		Cell wall-associated hydrolases (invasion-associated proteins)		CDS	nlpC/P60 family protein			
+	1669283	1670416	1134	COG0714: MoxR-like ATPases	peg	gi|57116681|ref|NC_000962.2|_1669283_1670416		MoxR-like ATPases	3.6.3.-	CDS	AAA domain family protein			
+	1670413	1671366	954	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1670413_1671366		Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)		CDS	conserved hypothetical protein			
+	1671377	1672384	1008	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1671377_1672384		Mg-chelatase subunit ChlD		CDS	von Willebrand factor type A domain protein			
-	1672457	1673380	924	FIG00821775: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1673335_1672457		Domain of unknown function (DUF4095).		CDS	conserved hypothetical protein			
+	1673440	1674183	744	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|57116681|ref|NC_000962.2|_1673440_1674183		3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)	1.1.1.100	CDS	3-oxoacyl-[acyl-carrier-protein] reductase FabG1	1.1.1.100	fabG1	
+	1674202	1675011	810	Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	peg	gi|57116681|ref|NC_000962.2|_1674202_1675011		Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	1.3.1.9	CDS	enoyl-[acyl-carrier-protein] reductase [NADH]	1.3.1.9	inhA	
-	1676017	1676925	909	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1676925_1676017		hypothetical protein		CDS	conserved hypothetical protein			
+	1675017	1676051	1035	"Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)"	peg	gi|57116681|ref|NC_000962.2|_1675017_1676051		ferrochelatase (EC 4.99.1.1)	4.99.1.1	CDS	ferrochelatase	4.99.1.1	hemH	
+	1676941	1677375	435	Putative activity regulator of membrane protease YbbK	peg	gi|57116681|ref|NC_000962.2|_1676941_1677375		Membrane protein implicated in regulation of membrane protease activity		CDS	membrane protein implicated in regulation of membrane protease activity			
+	1677397	1678542	1146	Putative stomatin/prohibitin-family membrane protease subunit YbbK	peg	gi|57116681|ref|NC_000962.2|_1677397_1678542		SPFH domain, Band 7 family protein		CDS	SPFH domain / Band 7 family protein			
+	1678552	1678908	357	FIG00822897: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1678552_1678908		DoxX-like family.		CDS	doxX-like family protein			
+	1678942	1679172	231	methylmalonyl-CoA mutase( EC:5.4.99.2 )	peg	gi|57116681|ref|NC_000962.2|_1678942_1679172		Methylmalonyl-CoA mutase, N-terminal domain/subunit		CDS	methylmalonyl-CoA mutase family protein			
+	1679322	1680629	1308	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1679394_1680629		hypothetical protein		CDS	putative membrane protein			
+	1680754	1680990	237	FIG00821853: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1680754_1680990					hypothetical protein			
-	1681208	1681966	759	DedA family protein paralog	peg	gi|57116681|ref|NC_000962.2|_1681966_1681208		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1682157	1684004	1848	"Methylmalonyl-CoA mutase, small subunit (EC 5.4.99.2)"	peg	gi|57116681|ref|NC_000962.2|_1682157_1684004		methylmalonyl-CoA mutase, heterodimeric type, beta chain	5.4.99.2	CDS	methylmalonyl-CoA mutase, small subunit	5.4.99.2	mutA	
+	1684005	1686257	2253	Methylmalonyl-CoA mutase (EC 5.4.99.2)	peg	gi|57116681|ref|NC_000962.2|_1684005_1686257		methylmalonyl-CoA mutase (EC 5.4.99.2)	5.4.99.2	CDS	methylmalonyl-CoA mutase N-terminal domain protein	5.4.99.-		
+	1686271	1686573	303	FIG00821542: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1686271_1686573		hypothetical protein		CDS	putative antitoxin MazE4			
+	1686570	1686887	318	FIG00822400: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1686570_1686887		Growth inhibitor	3.1.-	CDS	mRNA interferase MazF4	3.1.-.-	mazF4	
+	1686884	1687888	1005	putative periplasmic protein kinase ArgK and related GTPases of G3E family	peg	gi|57116681|ref|NC_000962.2|_1686884_1687888		LAO/AO transport system ATPase	2.7.-	CDS	LAO/AO transport system ATPase	2.7.-.-		
+	1687941	1689230	1290	Esterase LipL	peg	gi|57116681|ref|NC_000962.2|_1688010_1689230		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
-	1689303	1689920	618	Methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_1689920_1689303		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
-	1690134	1690346	213	FIG00820700: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1690346_1690134		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1690449	1690805	357	FIG00821021: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1690449_1690805					conserved hypothetical protein			
+	1690850	1691878	1029	"Glycosyl transferase, family 2"	peg	gi|57116681|ref|NC_000962.2|_1690880_1691878		Glycosyltransferases involved in cell wall biogenesis	2.4.-	CDS	putative glycosyltransferases			
+	1691890	1692711	822	FIG027348: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1691890_1692711		Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin		CDS	phytanoyl-CoA dioxygenase family protein			
+	1692924	1693823	900	FIG00821234: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1692924_1693823		hypothetical protein		CDS	conserved hypothetical protein			
-	1693996	1694436	441	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1694172_1693996		Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis		CDS	degT/DnrJ/EryC1/StrS aminotransferase family protein			
-	1694545	1695108	564	4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase	peg	gi|57116681|ref|NC_000962.2|_1694949_1694545		Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis		CDS	degT/DnrJ/EryC1/StrS aminotransferase family protein			
-	1695281	1695946	666	Acyltransferase	peg	gi|57116681|ref|NC_000962.2|_1695799_1695281		sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family		CDS	sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family protein			
-	1695943	1696461	519	SAM (And some other nucleotide) binding motif	peg	gi|57116681|ref|NC_000962.2|_1696077_1695943		Methyltransferase domain.		CDS	conserved hypothetical protein			
-	1696398	1696574	177	SAM (And some other nucleotide) binding motif	peg	gi|57116681|ref|NC_000962.2|_1696574_1696398					SAM-binding motif containing domain protein			
-	1696727	1697422	696	FIG00821895: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1697422_1696727		WbqC-like protein family.		CDS	wbqC-like family protein			
-	1698095	1699654	1560	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1699654_1698095		Protein of unknown function (DUF2029).		CDS	conserved hypothetical protein			
+	1699866	1700228	363	FIG00822916: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1699866_1700228		hypothetical protein		CDS	NAD dependent epimerase/dehydratase family protein			
+	1700254	1701093	840	Methyltransferase domain	peg	gi|57116681|ref|NC_000962.2|_1700254_1701093		Methyltransferase domain.		CDS	methyltransferase domain protein			
+	1701098	1701346	249				hypothetical protein		CDS				
+	1701295	1702593	1299	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1701322_1702593		hypothetical protein		CDS	putative membrane protein			
+	1703074	1704096	1023	"""GDP-mannose 4,6-dehydratase (EC 4.2.1.47)"""	peg	gi|57116681|ref|NC_000962.2|_1703074_1704096		GDP-mannose 4,6-dehydratase	4.2.1.47	CDS	GDP-mannose 4,6-dehydratase	4.2.1.47	gmd	
+	1704093	1705061	969	GDP-fucose synthetase	peg	gi|57116681|ref|NC_000962.2|_1704093_1705061		Nucleoside-diphosphate-sugar epimerases	1.1.1.271	CDS	GDP-L-fucose synthase 1	1.1.1.271	GER1	
+	1705058	1705789	732	FkbM family methyltransferase	peg	gi|57116681|ref|NC_000962.2|_1705058_1705789		methyltransferase, FkbM family		CDS	methyltransferase, FkbM family domain protein			
-	1705807	1706595	789	Putative glycosyl transferase	peg	gi|57116681|ref|NC_000962.2|_1706595_1705807		Glycosyltransferases involved in cell wall biogenesis		CDS	glycosyl transferase 2 family protein			
-	1706630	1707526	897	FIG00822023: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1707487_1706630		Methyltransferase domain.		CDS	methyltransferase domain protein			
-	1707529	1708539	1011	hypothetical protein Rv1516c	peg	gi|57116681|ref|NC_000962.2|_1708515_1707529		Glycosyltransferases involved in cell wall biogenesis		CDS	glycosyl transferase 2 family protein			
+	1708871	1709635	765	hypothetical protein Rv1517	peg	gi|57116681|ref|NC_000962.2|_1708892_1709635		Protein of unknown function (DUF2910).		CDS	conserved hypothetical protein			
+	1709644	1710603	960	Glycosyltransferase PglI (EC 2.4.1.-)	peg	gi|57116681|ref|NC_000962.2|_1709668_1710603		Glycosyltransferases involved in cell wall biogenesis		CDS	glycosyl transferase 2 family protein			
+	1710820	1711002	183	FIG00821351: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1710820_1711002					degT/DnrJ/EryC1/StrS aminotransferase family protein			
-	1712057	1712257	201	FIG00820990: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1712257_1712057		hypothetical protein		CDS	conserved hypothetical protein			
+	1711028	1712068	1041	Uncharacterized protein Rv1520/MT1570	peg	gi|57116681|ref|NC_000962.2|_1711028_1712068		Glycosyltransferases involved in cell wall biogenesis		CDS	glycosyl transferase 2 family protein			
+	1712302	1714053	1752	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1712302_1714053		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	long-chain-fatty-acid--AMP ligase FadD28	6.2.1.-	fadD28	
-	1714172	1717708	3537	Putative membrane protein MmpL12	peg	gi|57116681|ref|NC_000962.2|_1717612_1714172		Transport protein		CDS	membrane transport protein mmpL8		mmpL8	
+	1717601	1717921	321	FIG00820235: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1717601_1717921					methyltransferase domain protein			
+	1717911	1718696	786	Probable methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_1717911_1718696		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	ubiE/COQ5 methyltransferase family protein			
+	1718726	1719970	1245	Uncharacterized glycosyltransferase Rv1524/MT1575 (EC 2.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_1718726_1719970		Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	glycosyltransferase family 28 N-terminal domain protein			
-	1720780	1722060	1281	Uncharacterized protein Rv1526c/MT1577	peg	gi|57116681|ref|NC_000962.2|_1722060_1720780		Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	glycosyltransferase family 28 N-terminal domain protein			
+	1720017	1720802	786	POSSIBLE RHAMNOSYL TRANSFERASE WBBL2	peg	gi|57116681|ref|NC_000962.2|_1720050_1720802		Predicted glycosyltransferases		CDS	putative rhamnosyl transferase wbbL2			
-	1722083	1728385	6303	Polyketide synthase	peg	gi|57116681|ref|NC_000962.2|_1728346_1722083		Polyketide synthase modules and related proteins		CDS	mycocerosic acid synthase	2.3.1.111	mas	
-	1728953	1729393	441	PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4	peg	gi|57116681|ref|NC_000962.2|_1729393_1728953		hypothetical protein		CDS	putative polyketide synthase associated protein papA4			
+	1729502	1731256	1755	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1729502_1731256		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	long-chain-fatty-acid--AMP ligase FadD28	6.2.1.-	fadD28	
+	1731373	1732476	1104	Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|57116681|ref|NC_000962.2|_1731388_1732476		Threonine dehydrogenase and related Zn-dependent dehydrogenases	1.1.1.1	CDS	zinc-binding dehydrogenase family protein			
+	1732473	1733039	567	Carboxymuconolactone decarboxylase	peg	gi|57116681|ref|NC_000962.2|_1732488_1733039		Uncharacterized conserved protein		CDS	carboxymuconolactone decarboxylase family protein			
-	1733116	1733550	435	Putative uncharacterized protein BCG_1584c	peg	gi|57116681|ref|NC_000962.2|_1733550_1733116		uncharacterized domain 1		CDS	conserved hypothetical protein			
+	1733610	1734737	1128	Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)	peg	gi|57116681|ref|NC_000962.2|_1733610_1734737		Dioxygenases related to 2-nitropropane dioxygenase		CDS	nitronate monooxygenase family protein			
+	1734734	1735411	678	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_1734734_1735411		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	1735509	1735678	170										
+	1735976	1736212	237	Putative uncharacterized protein BCG_1587	peg	gi|57116681|ref|NC_000962.2|_1736045_1736212		hypothetical protein		CDS	conserved hypothetical protein			
+	1736519	1739644	3126	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	peg	gi|57116681|ref|NC_000962.2|_1736519_1739644		Isoleucyl-tRNA synthetase (EC 6.1.1.5)	6.1.1.5	CDS	isoleucine--tRNA ligase	6.1.1.5	ileS	
-	1741212	1742177	966	L-asparaginase (EC 3.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_1742159_1741212		asparaginase (EC 3.5.1.1)	3.5.1.1	CDS	asparaginase family protein			
+	1739856	1741247	1392	DNA polymerase IV (EC 2.7.7.7)	peg	gi|57116681|ref|NC_000962.2|_1739856_1741247		Nucleotidyltransferase/DNA polymerase involved in DNA repair	2.7.7.7	CDS	impB/mucB/samB family protein			
+	1742346	1742852	507	Lipoprotein signal peptidase (EC 3.4.23.36)	peg	gi|57116681|ref|NC_000962.2|_1742346_1742852		signal peptidase II (EC:3.4.23.36). Aspartic peptidase. MEROPS family A08	3.4.23.36	CDS	signal peptidase II	3.4.23.36	lspA	
+	1742887	1743771	885	Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	peg	gi|57116681|ref|NC_000962.2|_1742887_1743771		ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-)	5.4.99.23	CDS	pseudouridine synthase, RluA family protein	5.4.99.-		
-	1743778	1744371	594	"""Lipoprotein, LprL"""	peg	gi|57116681|ref|NC_000962.2|_1744248_1743778		Uncharacterized protein conserved in bacteria, putative lipoprotein		CDS	conserved hypothetical protein			
-	1744426	1744836	411	Cyanoglobin; Hemoglobin-like protein HbN	peg	gi|57116681|ref|NC_000962.2|_1744836_1744426		Truncated hemoglobins		CDS	group 1 truncated hemoglobin glbN		glbN	
-	1744871	1745035	165							hypothetical protein			
+	1745064	1746089	1026	"""Oxidoreductase, short-chain dehydrogenase/reductase family"""	peg	gi|57116681|ref|NC_000962.2|_1745064_1746089		Short-chain dehydrogenases of various substrate specificities		CDS	fatty acyl-CoA reductase	1.2.1.n2	acr1	
+	1746058	1746897	840	Ketoacyl reductase	peg	gi|57116681|ref|NC_000962.2|_1746058_1746897		Short-chain dehydrogenases of various substrate specificities		CDS	short chain dehydrogenase family protein			
-	1746958	1747191	234				hypothetical protein		CDS				
+	1747195	1747626	432	FIG00820144: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1747195_1747626		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	1747694	1751248	3555	DNA polymerase III alpha subunit (EC 2.7.7.7)	peg	gi|57116681|ref|NC_000962.2|_1747694_1751248		DNA polymerase III, alpha subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III, alpha subunit	2.7.7.7	dnaE	
-	1751297	1753360	2064	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1753360_1751297		PPE-repeat proteins		CDS	PPE family protein			
+	1753606	1754037	432	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1753606_1754037		Long-chain acyl-CoA synthetases (AMP-forming)		CDS	AMP-binding enzyme family protein			
+	1754043	1755431	1389	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1754043_1755431		Long-chain acyl-CoA synthetases (AMP-forming)		CDS	AMP-binding enzyme family protein			
+	1755445	1757310	1866	Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	peg	gi|57116681|ref|NC_000962.2|_1755460_1757310		glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	2.3.1.15	CDS	acyltransferase family protein			
+	1757438	1757671	234	FIG00821243: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1757438_1757671		hypothetical protein		CDS	hypothetical protein			
+	1757681	1759432	1752	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	peg	gi|57116681|ref|NC_000962.2|_1757681_1759432		succinate dehydrogenase subunit A (EC 1.3.5.1)	1.3.99.1	CDS	fumarate reductase, flavoprotein subunit	1.3.99.1	frdA	
+	1759435	1760178	744	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	peg	gi|57116681|ref|NC_000962.2|_1759435_1760178		succinate dehydrogenase subunit B (EC 1.3.5.1)	1.3.99.1	CDS	succinate dehydrogenase and fumarate reductase iron-sulfur family protein			
+	1760163	1760555	393	Fumarate reductase subunit C	peg	gi|57116681|ref|NC_000962.2|_1760163_1760555		Fumarate reductase subunit C		CDS	fumarate reductase subunit C family protein			
+	1760552	1760929	378	Fumarate reductase subunit D	peg	gi|57116681|ref|NC_000962.2|_1760552_1760929		succinate dehydrogenase subunit D (EC 1.3.5.1)		CDS	fumarate reductase subunit D family protein			
+	1761078	1761605	528	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_1761078_1761605		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	1761744	1762937	1194	putative transmembrane transport protein mmpL6	peg	gi|57116681|ref|NC_000962.2|_1761744_1762937		Predicted drug exporters of the RND superfamily		CDS	MMPL family protein			
+	1762947	1763393	447	AclJ	peg	gi|57116681|ref|NC_000962.2|_1762947_1763393		deazaflavin-dependent nitroreductase family protein		CDS	putative nitroreductase Rv1558/MT1609			
+	1763428	1764717	1290	Threonine dehydratase (EC 4.3.1.19)	peg	gi|57116681|ref|NC_000962.2|_1763428_1764717		L-threonine ammonia-lyase (EC 4.3.1.19)	4.3.1.19	CDS	threonine dehydratase	4.3.1.19	ilvA	
+	1764755	1764973	219	FIG00821924: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1764770_1764973		Transcription regulator of the Arc/MetJ class		CDS	antitoxin VapB11		vapB11	
+	1764979	1765383	405	FIG00820947: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1764979_1765383		Predicted nucleic acid-binding protein, contains PIN domain		CDS	ribonuclease VapC11	3.1.-.-	vapC11	
-	1765400	1767142	1743	Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)	peg	gi|57116681|ref|NC_000962.2|_1767142_1765400		maltooligosyl trehalose hydrolase (EC 3.2.1.141)	3.2.1.141	CDS	malto-oligosyltrehalose trehalohydrolase	3.2.1.141	treZ	
-	1767135	1769432	2298	Malto-oligosyltrehalose synthase (EC 5.4.99.15)	peg	gi|57116681|ref|NC_000962.2|_1769432_1767135		maltooligosyl trehalose synthase (EC 5.4.99.15)	5.4.99.15	CDS	malto-oligosyltrehalose synthase	5.4.99.15	treY	
-	1769436	1771601	2166	Glycogen debranching enzyme (EC 3.2.1.-)	peg	gi|57116681|ref|NC_000962.2|_1771601_1769436		isoamylase	3.2.1.-	CDS	glycogen debranching enzyme GlgX	3.2.1.-	glgX	
-	1771640	1773829	2190	O-antigen acetylase	peg	gi|57116681|ref|NC_000962.2|_1773763_1771640		Predicted acyltransferases		CDS	acyltransferase family protein			
-	1773928	1774620	693	Invasion protein	peg	gi|57116681|ref|NC_000962.2|_1774620_1773928		Cell wall-associated hydrolases (invasion-associated proteins)		CDS	conserved hypothetical protein			
-	1774860	1775309	450	FIG00821756: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1775144_1774860		hypothetical protein		CDS	conserved hypothetical protein			
+	1775326	1776705	1380	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	peg	gi|57116681|ref|NC_000962.2|_1775392_1776705		adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme (EC 2.6.1.62)	2.6.1.62	CDS	adenosylmethionine-8-amino-7-oxononanoate transaminase	2.6.1.62	bioA	
+	1776702	1777862	1161	8-amino-7-oxononanoate synthase (EC 2.3.1.47)	peg	gi|57116681|ref|NC_000962.2|_1776702_1777862		7-keto-8-aminopelargonate synthetase and related enzymes	2.3.1.47	CDS	aminotransferase class-V family protein			
+	1777859	1778539	681	Dethiobiotin synthetase (EC 6.3.3.3)	peg	gi|57116681|ref|NC_000962.2|_1777859_1778539		dethiobiotin synthase (EC 6.3.3.3)	6.3.3.3	CDS	dethiobiotin synthase	6.3.3.3	bioD	
+	1778539	1779048	510	FIG00820026: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1778539_1779048		2'-5' RNA ligase		CDS	2'-5' RNA ligase superfamily protein			
+	1779156	1779317	162	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1779156_1779317					hypothetical protein			
+	1779314	1779724	411	Probable phiRV1 phage protein	peg	gi|57116681|ref|NC_000962.2|_1779314_1779724		hypothetical protein		CDS	putative phiRv1 phage protein			
-	1780013	1780225	213	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1780225_1780013								
-	1780270	1780422	153	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1780422_1780270					conserved hypothetical protein			
-	1780643	1782064	1422	Phage major capsid protein	peg	gi|57116681|ref|NC_000962.2|_1782064_1780643		phage major capsid protein, HK97 family		CDS	phage major capsid protein, HK97 family			
+	1779791	1780699	909				hypothetical protein		CDS				
-	1782072	1782584	513	"PhiRv1 phage, prohead protease, HK97 family"	peg	gi|57116681|ref|NC_000962.2|_1782584_1782072		prohead peptidase. Unknown type peptidase. MEROPS family U35		CDS	phage prohead protease, HK97 family	3.4.-.-		
-	1782758	1783228	471	Probable phiRv1 phage protein	peg	gi|57116681|ref|NC_000962.2|_1783228_1782758		phage terminase, small subunit, putative, P27 family		CDS	phage terminase, small subunit, P27 family			
-	1783309	1783623	315	Probable phiRv1 phage protein	peg	gi|57116681|ref|NC_000962.2|_1783623_1783309		hypothetical protein		CDS	putative phiRv1 phage protein			
-	1783620	1783892	273	Probable phiRv1 phage protein	peg	gi|57116681|ref|NC_000962.2|_1783892_1783620		hypothetical protein		CDS	putative phiRv1 phage protein			
-	1783906	1784301	396	Probable phiRv1 phage protein	peg	gi|57116681|ref|NC_000962.2|_1784301_1783906		hypothetical protein		CDS	putative phiRv1 phage protein			
-	1784298	1784513	216				hypothetical protein		CDS				
-	1784497	1785912	1416	"DNA primase/helicase, phage-associated"	peg	gi|57116681|ref|NC_000962.2|_1785912_1784497		phage/plasmid primase, P4 family, C-terminal domain		CDS	phage/plasmid primase, P4 family, C-terminal domain protein			
-	1785912	1786310	399	Probable phiRv1 phage protein	peg	gi|57116681|ref|NC_000962.2|_1786310_1785912		Protein of unknown function (DUF2742).		CDS	conserved hypothetical protein			
-	1786307	1786528	222	Putative phiRv1 phage protein	peg	gi|57116681|ref|NC_000962.2|_1786528_1786307		hypothetical protein		CDS	putative phiRv1 phage protein			
-	1786584	1787099	516	Putative phiRv1 phage protein	peg	gi|57116681|ref|NC_000962.2|_1787099_1786584		hypothetical protein		CDS	conserved hypothetical protein			
-	1787096	1788487	1392	Probable phiRv1 integrase	peg	gi|57116681|ref|NC_000962.2|_1788115_1787096		Site-specific recombinases, DNA invertase Pin homologs		CDS	recombinase family protein			
-	1788162	1789397	1236	Partial REP13E12 repeat protein	peg	gi|57116681|ref|NC_000962.2|_1789397_1788162					conserved hypothetical protein			
+	1788984	1789160	177				hypothetical protein		CDS				
-	1789168	1789836	669				Domain of unknown function (DUF222).		CDS				
+	1790236	1791333	1098	Biotin synthase (EC 2.8.1.6)	peg	gi|57116681|ref|NC_000962.2|_1790236_1791333		biotin synthase (EC 2.8.1.6)	2.8.1.6	CDS	biotin synthase	2.8.1.6	bioB	
+	1791334	1791573	240	FIG00820826: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1791346_1791573		hypothetical protein		CDS				
+	1791570	1792235	666	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1791651_1792235		Protein of unknown function (DUF2567).		CDS	conserved hypothetical protein			
-	1792400	1793740	1341	Lipase 1 (EC 3.1.1.3)	peg	gi|57116681|ref|NC_000962.2|_1793740_1792400		Secretory lipase.		CDS	alpha/beta hydrolase family protein			
-	1793997	1794707	711	Nudix-related transcriptional regulator NrtR	peg	gi|57116681|ref|NC_000962.2|_1794707_1793997		ADP-ribose pyrophosphatase		CDS	NUDIX domain protein			
+	1794756	1795805	1050	Quinolinate synthetase (EC 2.5.1.72)	peg	gi|57116681|ref|NC_000962.2|_1794786_1795805		quinolinate synthetase (EC 2.5.1.72)	2.5.1.72	CDS	quinolinate synthetase complex, A subunit	2.5.1.72	nadA	
+	1795802	1797388	1587	L-aspartate oxidase (EC 1.4.3.16)	peg	gi|57116681|ref|NC_000962.2|_1795802_1797388		L-aspartate oxidase (EC 1.4.3.16)	1.4.3.16	CDS	L-aspartate oxidase	1.4.3.16	nadB	
+	1797388	1798245	858	Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	peg	gi|57116681|ref|NC_000962.2|_1797388_1798245		nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19)	2.4.2.19	CDS	nicotinate-nucleotide diphosphorylase	2.4.2.19	nadC	
+	1798294	1799052	759	Methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_1798318_1799052		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
-	1799073	1799483	411	FIG00820654: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1799483_1799073		deazaflavin-dependent nitroreductase family protein		CDS	deazaflavin-dependent oxidoreductase, nitroreductase family protein			
+	1799565	1800899	1335	Histidinol dehydrogenase (EC 1.1.1.23)	peg	gi|57116681|ref|NC_000962.2|_1799565_1800899		histidinol dehydrogenase (EC 1.1.1.23)	1.1.1.23	CDS	histidinol dehydrogenase	1.1.1.23	hisD	
+	1800896	1802038	1143	Histidinol-phosphate aminotransferase (EC 2.6.1.9)	peg	gi|57116681|ref|NC_000962.2|_1800896_1802038		histidinol phosphate aminotransferase apoenzyme (EC 2.6.1.9)	2.6.1.9	CDS	histidinol-phosphate transaminase	2.6.1.9	hisC	
+	1802035	1802667	633	Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	peg	gi|57116681|ref|NC_000962.2|_1802035_1802667		imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	4.2.1.19	CDS	imidazoleglycerol-phosphate dehydratase	4.2.1.19	hisB	
+	1802664	1803284	621	Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	peg	gi|57116681|ref|NC_000962.2|_1802664_1803284		imidazole glycerol phosphate synthase subunit hisH (EC 2.4.2.-)	2.4.2.-	CDS	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit	2.4.2.-	hisH	
+	1803294	1804031	738	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) / Acting phosphoribosylanthranilate isomerase (EC 5.3.1.24)	peg	gi|57116681|ref|NC_000962.2|_1803294_1804031		1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16)	5.3.1.24	CDS	bifunctional HisA/TrpF protein	5.3.1.16		
+	1804039	1804851	813	Histidinol-phosphatase [alternative form] (EC 3.1.3.15)	peg	gi|57116681|ref|NC_000962.2|_1804039_1804851		Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family	3.1.3.25	CDS	inositol-1-monophosphatase ImpA	3.1.3.25	impA	
+	1804853	1805656	804	Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	peg	gi|57116681|ref|NC_000962.2|_1804853_1805656		imidazole glycerol phosphate synthase subunit hisF (EC 4.1.3.-)	4.1.3.-	CDS	imidazole glycerol phosphate synthase subunit hisF	4.1.3.-	hisF	
+	1805653	1806000	348	Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	peg	gi|57116681|ref|NC_000962.2|_1805653_1806000		phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	3.5.4.19	CDS	phosphoribosyl-AMP cyclohydrolase family protein			
+	1806181	1807263	1083	Calcium/proton antiporter	peg	gi|57116681|ref|NC_000962.2|_1806181_1807263		Ca2+/H+ antiporter		CDS	sodium/calcium exchanger family protein			
-	1807298	1807762	465	Alkyl hydroperoxide reductase subunit C-like protein	peg	gi|57116681|ref|NC_000962.2|_1807672_1807298		Peroxiredoxin	1.11.1.15	CDS	ahpC/TSA family protein			
+	1807903	1809453	1551	"Anthranilate synthase, aminase component (EC 4.1.3.27)"	peg	gi|57116681|ref|NC_000962.2|_1807903_1809453		anthranilate synthase, component I (EC 4.1.3.27)	4.1.3.27	CDS	anthranilate synthase component I	4.1.3.27	trpE	
+	1809491	1810150	660	FIG00997095: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1809491_1810150		trp region conserved hypothetical membrane protein		CDS	tryptophan-associated transmembrane family protein			
+	1810240	1811058	819	Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	peg	gi|57116681|ref|NC_000962.2|_1810240_1811058		indole-3-glycerol phosphate synthase (EC 4.1.1.48)	4.1.1.48	CDS	indole-3-glycerol phosphate synthase	4.1.1.48	trpC	
+	1811094	1812359	1266	Tryptophan synthase beta chain (EC 4.2.1.20)	peg	gi|57116681|ref|NC_000962.2|_1811127_1812359		tryptophan synthase, beta chain (EC 4.2.1.20)	4.2.1.20	CDS	tryptophan synthase, beta subunit	4.2.1.20	trpB	
+	1812359	1813171	813	Tryptophan synthase alpha chain (EC 4.2.1.20)	peg	gi|57116681|ref|NC_000962.2|_1812368_1813171		tryptophan synthase, alpha chain (EC 4.2.1.20)	4.2.1.20	CDS	tryptophan synthase, alpha subunit	4.2.1.20	trpA	
-	1814528	1814683	156	FIG00821863: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1814683_1814528					hypothetical protein			
+	1813168	1814577	1410	Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)	peg	gi|57116681|ref|NC_000962.2|_1813168_1814577		prolipoprotein diacylglyceryl transferase		CDS	prolipoprotein diacylglyceryl transferase	2.4.99.-	lgt	
+	1815298	1815693	396	FIG00822583: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1815298_1815693		Predicted membrane protein		CDS	TM2 domain protein			
+	1815683	1816081	399	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1815731_1816081		Protein of unknown function (DUF2752).		CDS	conserved hypothetical protein			
+	1816189	1817607	1419	Pyruvate kinase (EC 2.7.1.40)	peg	gi|57116681|ref|NC_000962.2|_1816273_1817607		pyruvate kinase (EC 2.7.1.40)	2.7.1.40	CDS	pyruvate kinase	2.7.1.40	pyk	
+	1817597	1818517	921	Acyl-CoA thioesterase II (EC 3.1.2.-)	peg	gi|57116681|ref|NC_000962.2|_1817633_1818517		acyl-CoA thioesterase II	3.1.2.-	CDS	acyl-CoA thioesterase II	3.1.2.-	tesB	
-	1818542	1818895	354	FIG00824830: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1818895_1818542					hypothetical protein			
-	1819963	1821693	1731	Transport ATP-binding protein CydC	peg	gi|57116681|ref|NC_000962.2|_1821675_1819963		thiol reductant ABC exporter, CydC subunit		CDS	thiol reductant ABC exporter, CydC subunit		cydC	
+	1818575	1820029	1455				Uncharacterized conserved protein		CDS				
-	1821690	1823273	1584	Transport ATP-binding protein CydD	peg	gi|57116681|ref|NC_000962.2|_1823273_1821690		thiol reductant ABC exporter, CydD subunit		CDS	thiol reductant ABC exporter, CydD subunit		cydD	
-	1823360	1824400	1041	Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	peg	gi|57116681|ref|NC_000962.2|_1824400_1823360		cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10)	1.10.3.-	CDS	cytochrome d ubiquinol oxidase, subunit II	1.10.3.-	cydB	
-	1824430	1825887	1458	Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	peg	gi|57116681|ref|NC_000962.2|_1825887_1824430		cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10)	1.10.3.-	CDS	bacterial Cytochrome Ubiquinol Oxidase family protein			
-	1825998	1826567	570	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1826528_1825998		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	1826614	1827870	1257	Adenylate cyclase (EC 4.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_1827807_1826614		Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	adenylate cyclase	4.6.1.1	cya	
+	1828171	1828797	627	response regulator	peg	gi|57116681|ref|NC_000962.2|_1828180_1828797		response regulator receiver and ANTAR domain protein		CDS	putative transcriptional regulatory protein pdtaR			
-	1828865	1830073	1209	Probable nonspecific lipid-transfer protein	peg	gi|57116681|ref|NC_000962.2|_1830073_1828865		Acetyl-CoA acetyltransferase		CDS	3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein			
-	1830070	1830561	492	FIG00823085: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1830561_1830070		Predicted nucleic-acid-binding protein containing a Zn-ribbon		CDS	conserved hypothetical protein			
+	1830665	1833379	2715	DNA polymerase I (EC 2.7.7.7)	peg	gi|57116681|ref|NC_000962.2|_1830665_1833379		DNA polymerase I (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase I family protein	2.7.7.7	polA	
+	1833542	1834987	1446	SSU ribosomal protein S1p	peg	gi|57116681|ref|NC_000962.2|_1833542_1834987		SSU ribosomal protein S1P		CDS	S1 RNA binding domain protein			
+	1835013	1836236	1224	Dephospho-CoA kinase (EC 2.7.1.24)	peg	gi|57116681|ref|NC_000962.2|_1835013_1836236		dephospho-CoA kinase (EC 2.7.1.24)	2.7.1.24	CDS	dephospho-CoA kinase	2.7.1.24	coaE	
-	1836387	1836830	444	FIG00996124: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1836830_1836387		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1836895	1839171	2277	Excinuclease ABC subunit B	peg	gi|57116681|ref|NC_000962.2|_1836895_1839171		Excinuclease ABC subunit B		CDS	excinuclease ABC subunit B	3.1.25.-	uvrB	
-	1840572	1842269	1698	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1842269_1840572		Predicted membrane protein	2.4.1.-	CDS	dolichyl-phosphate-mannose-mannosyltransferase family protein			
+	1839168	1840583	1416	Drug efflux membrane protein	peg	gi|57116681|ref|NC_000962.2|_1839168_1840583		Arabinose efflux permease		CDS	putative multidrug-efflux transporter Rv1634/MT1670			
+	1842168	1842428	261	FIG00824005: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1842291_1842428		hypothetical protein		CDS	putative predicted protein			
+	1842451	1842891	441	Universal stress protein UspA and related nucleotide-binding proteins	peg	gi|57116681|ref|NC_000962.2|_1842451_1842891		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress family protein			
-	1842898	1843692	795	metallo-beta-lactamase superfamily protein	peg	gi|57116681|ref|NC_000962.2|_1843632_1842898		Zn-dependent hydrolases, including glyoxylases		CDS	metallo-beta-lactamase superfamily protein			
+	1843717	1846659	2943	Excinuclease ABC subunit A	peg	gi|57116681|ref|NC_000962.2|_1843741_1846659		Excinuclease ABC subunit A		CDS	excinuclease ABC subunit A	3.1.25.-	uvrA	
-	1846716	1846973	258	FIG00820127: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1846973_1846716		hypothetical protein		CDS	conserved hypothetical protein			
-	1846989	1848458	1470	FIG00824695: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1848440_1846989		Predicted esterase		CDS	esterase family protein			
-	1848517	1851852	3336	Putative membrane protein found fused to lysyl-tRNA synthetase like protein / Lysyl-tRNA synthetase (class II) related protein found fused to membrane protein	peg	gi|57116681|ref|NC_000962.2|_1851768_1848517		lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6	CDS	lysine--tRNA ligase	6.1.1.6	lysS	
+	1852357	1852878	522	Translation initiation factor 3	peg	gi|57116681|ref|NC_000962.2|_1852357_1852878		bacterial translation initiation factor 3 (bIF-3)		CDS	translation initiation factor IF-3		infC	
+	1852928	1853122	195	LSU ribosomal protein L35p	peg	gi|57116681|ref|NC_000962.2|_1852928_1853122		LSU ribosomal protein L35P		CDS	ribosomal protein L35		rpmI	
+	1853184	1853573	390	LSU ribosomal protein L20p	peg	gi|57116681|ref|NC_000962.2|_1853184_1853573		LSU ribosomal protein L20P		CDS	ribosomal protein L20		rplT	
+	1853606	1854388	783	"RNA methyltransferase, TrmH family"	peg	gi|57116681|ref|NC_000962.2|_1853606_1854388		rRNA methylases		CDS	RNA 2'-O ribose methyltransferase substrate binding family protein			
-	1854399	1855454	1056	FIG00820092: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1855454_1854399		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1855764	1856696	933	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1855764_1856696		PE family.		CDS	PE family protein			
+	1856774	1857724	951	Purine cyclase-related protein	peg	gi|57116681|ref|NC_000962.2|_1856918_1857724		Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	adenylate and Guanylate cyclase catalytic domain protein			
+	1857731	1858537	807	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1857731_1858537		hypothetical protein		CDS	putative membrane protein			
+	1858700	1859758	1059	Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	peg	gi|57116681|ref|NC_000962.2|_1858700_1859758		phenylalanyl-tRNA synthetase, alpha subunit (EC 6.1.1.20)	6.1.1.20	CDS	phenylalanine--tRNA ligase, alpha subunit	6.1.1.20	pheS	
+	1859758	1862253	2496	Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	peg	gi|57116681|ref|NC_000962.2|_1859758_1862253		phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20)	6.1.1.20	CDS	phenylalanine--tRNA ligase, beta subunit	6.1.1.20	pheT	
-	1862347	1865382	3036	PE family protein	peg	gi|57116681|ref|NC_000962.2|_1865382_1862347		PE family.		CDS	PE family protein			
+	1865576	1866634	1059	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	peg	gi|57116681|ref|NC_000962.2|_1865591_1866634		N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	1.2.1.38	CDS	N-acetyl-gamma-glutamyl-phosphate reductase	1.2.1.38	argC	
+	1866631	1867845	1215	Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	peg	gi|57116681|ref|NC_000962.2|_1866631_1867845		glutamate N-acetyltransferase (EC 2.3.1.35)	2.3.1.1, 2.3.1.35	CDS	glutamate N-acetyltransferase/amino-acid acetyltransferase	2.3.1.35	argJ	
+	1867842	1868726	885	Acetylglutamate kinase (EC 2.7.2.8)	peg	gi|57116681|ref|NC_000962.2|_1867842_1868726		N-acetylglutamate kinase (EC 2.7.2.8)	2.7.2.8	CDS	acetylglutamate kinase	2.7.2.8	argB	
+	1868723	1869925	1203	Acetylornithine aminotransferase (EC 2.6.1.11)	peg	gi|57116681|ref|NC_000962.2|_1868723_1869925		acetylornithine aminotransferase apoenzyme (EC 2.6.1.11)	2.6.1.11	CDS	acetylornithine aminotransferase	2.6.1.11	argD	
+	1869922	1870845	924	Ornithine carbamoyltransferase (EC 2.1.3.3)	peg	gi|57116681|ref|NC_000962.2|_1869922_1870845		ornithine carbamoyltransferase (EC 2.1.3.3)	2.1.3.3	CDS	ornithine carbamoyltransferase	2.1.3.3	argF	
+	1870842	1871354	513	"Arginine pathway regulatory protein ArgR, repressor of arg regulon"	peg	gi|57116681|ref|NC_000962.2|_1870842_1871354		transcriptional regulator, ArgR family		CDS	arginine repressor		argR	
+	1871363	1872559	1197	Argininosuccinate synthase (EC 6.3.4.5)	peg	gi|57116681|ref|NC_000962.2|_1871363_1872559		argininosuccinate synthase (EC 6.3.4.5)	6.3.4.5	CDS	argininosuccinate synthase	6.3.4.5	argG	
+	1872639	1874051	1413	Argininosuccinate lyase (EC 4.3.2.1)	peg	gi|57116681|ref|NC_000962.2|_1872639_1874051		argininosuccinate lyase (EC 4.3.2.1)	4.3.2.1	CDS	argininosuccinate lyase	4.3.2.1	argH	
+	1874160	1875221	1062	Chalcone synthase (EC 2.3.1.74)	peg	gi|57116681|ref|NC_000962.2|_1874160_1875221		Predicted naringenin-chalcone synthase		CDS	polyketide synthase-like Pks10	2.3.1.-	pks10	
+	1875304	1881684	6381	Probable polyketide synthase pks7	peg	gi|57116681|ref|NC_000962.2|_1875304_1881684		KR domain./Alcohol dehydrogenase GroES-like domain./Acyl transferase domain./Zinc-binding dehydrogenase./Phosphopantetheine attachment site.		CDS	phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	
+	1881704	1886512	4809	Probable polyketide synthase pks7	peg	gi|57116681|ref|NC_000962.2|_1881704_1886512		Polyketide synthase modules and related proteins		CDS	phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	
+	1886488	1888020	1533	Polyketide synthase Pks17	peg	gi|57116681|ref|NC_000962.2|_1886488_1888020		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	polysaccharide biosynthesis family protein			
+	1888026	1891079	3054	Polyketide synthase	peg	gi|57116681|ref|NC_000962.2|_1888026_1891079		Polyketide synthase modules and related proteins		CDS	phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	
-	1892270	1893580	1311	Cytochrome P450 139	peg	gi|57116681|ref|NC_000962.2|_1893580_1892270		Cytochrome P450		CDS	cytochrome P450 family protein			
+	1891214	1892287	1074	Chalcone synthase (EC 2.3.1.74)	peg	gi|57116681|ref|NC_000962.2|_1891214_1892287		Predicted naringenin-chalcone synthase		CDS	alpha-pyrone synthesis polyketide synthase-like Pks11	2.3.1.-	pks11	
-	1893577	1894230	654	"ABC transporter, ATP-binding protein"	peg	gi|57116681|ref|NC_000962.2|_1894230_1893577		ATPase components of ABC transporters with duplicated ATPase domains		CDS	ABC transporter family protein			
-	1894224	1895342	1119	hypothetical protein Rv1667c	peg	gi|57116681|ref|NC_000962.2|_1895342_1894224		ATPase components of ABC transporters with duplicated ATPase domains		CDS	ABC transporter family protein			
+	1895881	1896087	207	FIG00821328: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1895881_1896087								
+	1896120	1896467	348	FIG00820311: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1896120_1896467		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1896427	1896867	441	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1896475_1896867		hypothetical protein		CDS	putative membrane protein			
-	1896876	1898207	1332	Integral membrane transport protein	peg	gi|57116681|ref|NC_000962.2|_1898207_1896876		Sugar phosphate permease		CDS	major Facilitator Superfamily protein			
-	1898300	1899232	933	"""Transglutaminase-like enzymes, putative cysteine proteases"""	peg	gi|57116681|ref|NC_000962.2|_1899232_1898300		Transglutaminase-like enzymes, putative cysteine proteases		CDS	transglutaminase-like superfamily protein			
-	1899260	1899916	657	"Transcriptional regulator, ArsR family"	peg	gi|57116681|ref|NC_000962.2|_1899916_1899260		transcriptional regulator, ArsR family		CDS	bacterial regulatory , arsR family protein			
-	1900241	1900975	735	"transcriptional regulator, Crp/Fnr family"	peg	gi|57116681|ref|NC_000962.2|_1900819_1900241		cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	cyclic nucleotide-binding domain protein			
+	1900092	1900247	156	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1900101_1900247		hypothetical protein		CDS	integral membrane domain protein			
+	1901176	1901751	576	FIG00820852: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1901176_1901751		Peroxiredoxin		CDS	ahpC/TSA family protein			
+	1901748	1902296	549	Lipoprotein DsbF	peg	gi|57116681|ref|NC_000962.2|_1901835_1902296		Thiol-disulfide isomerase and thioredoxins		CDS	soluble secreted antigen MPT53		mpt53	
+	1902391	1903299	909	fig|419947.9.peg.2833	peg	gi|57116681|ref|NC_000962.2|_1902391_1903299		hypothetical protein		CDS	putative membrane protein			
+	1903296	1904420	1125	"Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)"	peg	gi|57116681|ref|NC_000962.2|_1903296_1904420		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
+	1904429	1905253	825	Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	peg	gi|57116681|ref|NC_000962.2|_1904450_1905253		ABC-type phosphate/phosphonate transport system, periplasmic component		CDS	ABC transporter, phosphonate, periplasmic substrate-binding family protein			
+	1905247	1906242	996	Molybdopterin biosynthesis protein MoeX	peg	gi|57116681|ref|NC_000962.2|_1905247_1906242		Radical SAM superfamily.		CDS	radical SAM superfamily protein			
+	1906472	1907320	849	AbpS-like protein	peg	gi|57116681|ref|NC_000962.2|_1906472_1907320		DivIVA protein.		CDS	divIVA family protein			
+	1907375	1907525	151							hypothetical protein			
+	1907594	1910593	3000	Polyhydroxyalkanoic acid synthase	peg	gi|57116681|ref|NC_000962.2|_1907594_1910593		Poly(3-hydroxyalkanoate) synthetase	6.2.1.-	CDS	alpha/beta hydrolase fold family protein			
-	1910776	1911399	624	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_1911267_1910776		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	1910586	1910810	225	FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster	peg	gi|57116681|ref|NC_000962.2|_1910586_1910810		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	1911401	1912081	681	"""ABC drug efflux pump, inner membrane subunit, DrrB family"""	peg	gi|57116681|ref|NC_000962.2|_1912081_1911401		ABC transporter efflux protein, DrrB family		CDS	ABC-2 type transporter family protein			
-	1912153	1912920	768	ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_1912920_1912153		ABC-type multidrug transport system, ATPase component		CDS	ABC transporter family protein			
+	1912979	1913590	612	DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	peg	gi|57116681|ref|NC_000962.2|_1912979_1913590		DNA-3-methyladenine glycosylase (3mg)	3.2.2.21	CDS	DNA-3-methyladenine glycosylase family protein	3.2.2.-		
+	1913602	1914876	1275	Tyrosyl-tRNA synthetase (EC 6.1.1.1)	peg	gi|57116681|ref|NC_000962.2|_1913602_1914876		tyrosyl-tRNA synthetase (EC 6.1.1.1)	6.1.1.1	CDS	tyrosine--tRNA ligase	6.1.1.1	tyrS	
+	1915527	1915910	384	Lipoprotein LprJ	peg	gi|57116681|ref|NC_000962.2|_1915527_1915910		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
+	1915949	1916701	753	TPR-repeat-containing protein	peg	gi|57116681|ref|NC_000962.2|_1916099_1916701		Tetratrico peptide repeat.		CDS	tetratrico peptide repeat family protein			
+	1916698	1917759	1062	4-nitrophenylphosphatase (EC 3.1.3.41)	peg	gi|57116681|ref|NC_000962.2|_1916698_1917759		Predicted sugar phosphatases of the HAD superfamily		CDS	HAD hydrolase, IIA family protein			
+	1917756	1917932	177	FIG00820006: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1917756_1917932		hypothetical protein		CDS	conserved hypothetical protein			
+	1917940	1918746	807	RNA binding methyltransferase FtsJ like	peg	gi|57116681|ref|NC_000962.2|_1917940_1918746		hemolysin TlyA family protein		CDS	hemolysin TlyA family protein			
+	1918746	1919669	924	NAD kinase (EC 2.7.1.23)	peg	gi|57116681|ref|NC_000962.2|_1918746_1919669		Predicted sugar kinase	2.7.1.23	CDS	inorganic polyphosphate/ATP-NAD kinase	2.7.1.23	ppnK	
+	1919683	1921446	1764	DNA repair protein RecN	peg	gi|57116681|ref|NC_000962.2|_1919683_1921446		DNA replication and repair protein RecN		CDS	DNA repair protein RecN		recN	
+	1921542	1922723	1182	FIG005773: conserved membrane protein ML1361	peg	gi|57116681|ref|NC_000962.2|_1921542_1922723		Uncharacterized membrane-anchored protein conserved in bacteria		CDS	thiamine pyrophosphokinase C terminal family protein			
+	1922745	1923689	945	FIG007481: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1922745_1923689		Protein of unknown function (DUF3186).		CDS	conserved hypothetical protein			
+	1923829	1925589	1761	CTP synthase (EC 6.3.4.2)	peg	gi|57116681|ref|NC_000962.2|_1923829_1925589		CTP synthase (EC 6.3.4.2)	6.3.4.2	CDS	CTP synthase	6.3.4.2	pyrG	
+	1925582	1926205	624	ADP-ribose pyrophosphatase (EC 3.6.1.13)	peg	gi|57116681|ref|NC_000962.2|_1925582_1926205		NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.13	CDS	NUDIX domain protein			
+	1926202	1927137	936	Tyrosine recombinase XerD	peg	gi|57116681|ref|NC_000962.2|_1926202_1927137		tyrosine recombinase XerD subunit		CDS	tyrosine recombinase XerD		xerD	
-	1927211	1928575	1365	FIG00829478: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1928575_1927211		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
-	1928837	1928998	162	FIG00820900: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1928998_1928837		hypothetical protein		CDS	conserved hypothetical protein			
-	1929131	1929832	702	Probable catechol-o-methyltransferase (EC 2.1.1.6)	peg	gi|57116681|ref|NC_000962.2|_1929832_1929131		Predicted O-methyltransferase	2.1.1.6	CDS	O-methyltransferase family protein			
-	1929786	1931456	1671	D-serine/D-alanine/glycine transporter	peg	gi|57116681|ref|NC_000962.2|_1931456_1929786		D-serine/D-alanine/glycine:proton symporter, AAT family (TC 2.A.3.1.7)		CDS	D-serine/D-alanine/glycine transporter		cycA	
-	1931497	1932654	1158	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1932654_1931497		PPE-repeat proteins		CDS	PPE family protein			
-	1932694	1933878	1185	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1933878_1932694		Polymorphic PE/PPE proteins C terminal./PPE family.		CDS	PPE family protein			
-	1933963	1934202	240				hypothetical protein		CDS				
-	1934482	1934649	168	FIG00821036: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1934649_1934482		hypothetical protein		CDS	hypothetical protein			
+	1934882	1936342	1461	Sulfate permease	peg	gi|57116681|ref|NC_000962.2|_1934918_1936342		Sulfate permease and related transporters (MFS superfamily)		CDS	sulfate transporter family protein			
+	1936453	1937316	864	Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj	peg	gi|57116681|ref|NC_000962.2|_1936453_1937316		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
+	1937313	1938149	837	Segregation and condensation protein A	peg	gi|57116681|ref|NC_000962.2|_1937313_1938149		condensin subunit ScpA		CDS	scpA/B family protein			
+	1938146	1938841	696	Segregation and condensation protein B	peg	gi|57116681|ref|NC_000962.2|_1938146_1938841		condensin subunit ScpB		CDS	segregation and condensation protein B		scpB	
+	1938838	1939602	765	Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)	peg	gi|57116681|ref|NC_000962.2|_1938838_1939602		ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-)	5.4.99.22	CDS	pseudouridine synthase family protein	5.4.99.-		
+	1939599	1940291	693	Cytidylate kinase (EC 2.7.4.14)	peg	gi|57116681|ref|NC_000962.2|_1939599_1940291		cytidylate kinase (EC 2.7.4.14)	2.7.4.14	CDS	cytidylate kinase	2.7.4.14	cmk	
+	1940288	1941679	1392	GTP-binding protein EngA	peg	gi|57116681|ref|NC_000962.2|_1940309_1941679		ribosome-associated GTPase EngA		CDS	ribosome-associated GTPase EngA		engA	
+	1941853	1942665	813	COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	peg	gi|57116681|ref|NC_000962.2|_1941853_1942665		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
+	1942659	1943573	915	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	peg	gi|57116681|ref|NC_000962.2|_1942659_1943573		3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	1.1.1.157	CDS	NAD binding domain of 6-phosphogluconate dehydrogenase family protein			
+	1943576	1944406	831	Metal-dependent hydrolase	peg	gi|57116681|ref|NC_000962.2|_1943576_1944406		Predicted metal-dependent hydrolase		CDS	cyclase family protein			
+	1944406	1944756	351	FIG041522: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1944442_1944756		Cupin domain.		CDS	cupin domain protein			
+	1944809	1945627	819	FIG00820704: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1944809_1945627		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1945641	1946420	780	"Transcriptional regulator, IclR family"	peg	gi|57116681|ref|NC_000962.2|_1945641_1946420		transcriptional regulator, IclR family		CDS	helix-turn-helix family protein			
-	1947030	1947419	390	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_1947419_1947030		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
-	1947416	1947643	228	Antitoxin 1	peg	gi|57116681|ref|NC_000962.2|_1947643_1947416		hypothetical protein		CDS	conserved hypothetical protein			
+	1947861	1949345	1485	Biotin carboxylase-like protein	peg	gi|57116681|ref|NC_000962.2|_1947903_1949345		Biotin carboxylase		CDS	ATP-grasp domain protein			
+	1949342	1950589	1248	6-aminohexanoate-dimer hydrolase (EC 3.5.1.46)	peg	gi|57116681|ref|NC_000962.2|_1949342_1950589		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
-	1950632	1951048	417	FIG00820406: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1950922_1950632		hypothetical protein		CDS	conserved hypothetical protein			
-	1951041	1951751	711	"Transcriptional regulator, HxlR family"	peg	gi|57116681|ref|NC_000962.2|_1951751_1951041		transcriptional regulator, HxlR family		CDS	hxlR-like helix-turn-helix family protein			
+	1951852	1953237	1386	Oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_1951852_1953237		FAD/FMN-containing dehydrogenases		CDS	FAD binding domain protein			
+	1953270	1953839	570	FIG00820895: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1953270_1953839		TIGR03086 family protein		CDS	conserved hypothetical protein			
-	1953864	1954634	771	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1954541_1953864		hypothetical protein		CDS	conserved hypothetical protein			
-	1954631	1955569	939	FIG00819993: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1955569_1954631		methyltransferase, putative, TIGR00027 family		CDS	methyltransferase, TIGR00027 family protein	2.1.1.-		
-	1955692	1957245	1554	Beta-lactamase (EC 3.5.2.6)	peg	gi|57116681|ref|NC_000962.2|_1957245_1955692		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
+	1957677	1959233	1557	Aldehyde dehydrogenase (EC 1.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1957677_1959233		NAD-dependent aldehyde dehydrogenases	1.2.1.16	CDS	aldehyde dehydrogenase family protein			
-	1959243	1959791	549	Alkyl hydroperoxide reductase and/or thiol-specific antioxidant family (AhpC/TSA) protein	peg	gi|57116681|ref|NC_000962.2|_1959773_1959243		Peroxiredoxin		CDS	ahpC/TSA family protein			
-	1959855	1960487	633	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1960451_1959855		hypothetical protein		CDS	putative membrane protein Rv1733c/MT1774			
-	1960774	1961016	243	FIG00821291: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1961016_1960774		Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes		CDS	2-oxoacid dehydrogenases acyltransferase family protein			
-	1961291	1961884	594	C4-dicarboxylate transporter/malic acid transport protein	peg	gi|57116681|ref|NC_000962.2|_1961884_1961291		Tellurite resistance protein and related permeases		CDS	conserved hypothetical protein			
+	1961158	1961358	201				hypothetical protein		CDS				
-	1961887	1962129	243	Tellurite-resistance/Dicarboxylate Transporter (TDT) family	peg	gi|57116681|ref|NC_000962.2|_1962018_1961887		C4-dicarboxylate transporter/malic acid transport protein.		CDS	hypothetical protein			
-	1962228	1964186	1959	Probable nitrate reductase NarX( EC:1.7.99.4 )	peg	gi|57116681|ref|NC_000962.2|_1964186_1962228		NarX protein		CDS	nitrate reductase molybdenum cofactor assembly chaperone		narJ	
-	1964183	1965370	1188	Nitrate/nitrite transporter co-occurring with respiratory nitrate reductase	peg	gi|57116681|ref|NC_000962.2|_1965346_1964183		Nitrate/nitrite transporter		CDS	putative nitrate/nitrite transporter narK2			
+	1965609	1965941	333	"FIG041371: hypothetical protein, Rv1738/MT1780"	peg	gi|57116681|ref|NC_000962.2|_1965609_1965941		Domain of unknown function (DUF1876).		CDS	conserved hypothetical protein			
-	1965955	1967637	1683	Sulfate transporter	peg	gi|57116681|ref|NC_000962.2|_1967637_1965955		high affinity sulphate transporter 1		CDS	putative sulfate transporter Rv1739c/MT1781			
+	1967705	1967917	213	FIG00820182: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1967705_1967917		Uncharacterized protein conserved in bacteria		CDS	antitoxin VapB30		vapB30	
+	1967917	1968165	249	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_1967917_1968165		hypothetical protein		CDS	putative ribonuclease VapC30			
+	1968173	1968910	738	FIG00821912: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1968173_1968910		hypothetical protein		CDS	conserved hypothetical protein			
+	1969004	1970704	1701	Serine/threonine-protein kinase PknE (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_1969004_1970704		Serine/threonine protein kinase	2.7.11.1	CDS	serine/threonine-protein kinase pknE	2.7.11.1	pknE	
-	1970975	1971142	168	FIG00820409: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1971142_1970975					conserved hypothetical protein			
-	1970989	1971390	402				hypothetical protein		CDS				
-	1971380	1971991	612	Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	peg	gi|57116681|ref|NC_000962.2|_1971991_1971380		isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	5.3.3.2	CDS	isopentenyl-diphosphate delta-isomerase	5.3.3.2	idi	
+	1971221	1971406	186	FIG00830366: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1971221_1971406					hypothetical protein			
+	1972138	1973568	1431	Probable serine/threonine-protein kinase pknF (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_1972138_1973568		Protein kinase domain.	2.7.11.1	CDS	serine/threonine-protein kinase pknF	2.7.11.1	pknF	
+	1973636	1976227	2592	Probable conserved transmembrane ATP-binding protein ABC transporter	peg	gi|57116681|ref|NC_000962.2|_1973636_1976227		FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits		CDS	ABC transporter family protein			
-	1977328	1977819	492	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_1977819_1977328		hypothetical protein		CDS	putative membrane protein			
+	1976660	1977331	672	Putative uncharacterized protein BCG_1787	peg	gi|57116681|ref|NC_000962.2|_1976660_1977331		hypothetical protein		CDS	conserved hypothetical protein			
-	1977969	1979567	1599	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_1979567_1977969		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	long-chain-fatty-acid--CoA ligase FadD17	6.2.1.3	fadD17	
+	1979765	1981003	1239	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	peg	gi|57116681|ref|NC_000962.2|_1979765_1981003		2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases		CDS	FAD binding domain protein			
+	1981058	1981241	184							conserved hypothetical protein			
+	1981341	1981547	207	FIG00823939: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1981341_1981547		hypothetical protein		CDS	conserved hypothetical protein			
-	1981614	1984775	3162	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_1984775_1981614		PPE-repeat proteins		CDS	PPE family protein			
-	1984979	1986490	1512	FIG00821263: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1986343_1984979		Domain of unknown function (DUF4185).		CDS	conserved hypothetical protein			
+	1986345	1986545	201	FIG00825719: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1986345_1986545								
-	1986854	1987675	822	Phospholipase C 4 precursor (EC 3.1.4.3)	peg	gi|57116681|ref|NC_000962.2|_1987675_1986854		Phospholipase C		CDS	phosphoesterase family protein			
-	1987745	1988629	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1988629_1987745		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	1988680	1989006	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1989006_1988680		Transposase and inactivated derivatives		CDS	transposase family protein			
+	1989042	1989566	525	Cutinase Cut1	peg	gi|57116681|ref|NC_000962.2|_1989042_1989566		Cutinase.	3.1.1.-	CDS	cutinase family protein			
-	1989833	1992685	2853	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_1992685_1989833		PE family.		CDS	PE family protein			
+	1992814	1992972	159	FIG00822708: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1992814_1992972					hypothetical protein			
+	1993255	1994661	1407	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_1993255_1994661		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		
-	1994671	1995054	384	FIG00820067: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1995054_1994671		hypothetical protein		CDS	conserved hypothetical protein			
-	1995054	1995842	789	FIG00825647: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1995842_1995054		Uncharacterized conserved protein		CDS	heavy-metal-binding family protein			
+	1996152	1996478	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1996152_1996478		Transposase and inactivated derivatives		CDS	transposase family protein			
+	1996529	1997413	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_1996529_1997413		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	1997418	1998515	1098	"Transcriptional regulator, IclR family"	peg	gi|57116681|ref|NC_000962.2|_1998515_1997418		Domain of unknown function (DUF222)./HNH endonuclease.		CDS	HNH endonuclease family protein			
-	1999142	1999357	216	PUTATIVE TRANSPOSASE (FRAGMENT)	peg	gi|57116681|ref|NC_000962.2|_1999357_1999142					putative transposase subunit B			
+	1999731	2000006	276	FIG00820648: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_1999731_2000006		Uncharacterized protein conserved in bacteria		CDS	metal-sensitive transcriptional repressor family protein			
+	2000044	2000433	390	Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44)	peg	gi|57116681|ref|NC_000962.2|_2000074_2000433		alkylhydroperoxidase AhpD family core domain		CDS	alkylhydroperoxidase AhpD family core domain protein			
+	2000614	2002470	1857	PE_PGRS	peg	gi|57116681|ref|NC_000962.2|_2000614_2002470		PE family.		CDS	PE family protein			
+	2002626	2003870	1245	"L-gulono-1,4-lactone oxidase (EC 1.1.3.8)"	peg	gi|57116681|ref|NC_000962.2|_2002626_2003870		Predicted amino acid aldolase or racemase		CDS	alanine racemase, N-terminal domain protein			
+	2003959	2005164	1206	Putative aminopeptidase	peg	gi|57116681|ref|NC_000962.2|_2003959_2005164		Predicted aminopeptidases		CDS	peptidase M28 family protein			
+	2005161	2006447	1287	"oxidoreductase, FAD-binding"	peg	gi|57116681|ref|NC_000962.2|_2005161_2006447		FAD-linked oxidoreductase	1.1.3.8	CDS	FAD-linked oxidoreductase family protein			
+	2006663	2006947	285				Response regulator with putative antiterminator output domain		CDS				
-	2007020	2007715	696	"Transcriptional regulator, IclR family"	peg	gi|57116681|ref|NC_000962.2|_2007715_2007020		transcriptional regulator, IclR family		CDS	bacterial transcriptional regulator family protein			
+	2007832	2009172	1341	"oxidoreductase, FAD-binding"	peg	gi|57116681|ref|NC_000962.2|_2007832_2009172		FAD/FMN-containing dehydrogenases		CDS	FAD binding domain protein			
+	2009172	2009990	819	FIG00820194: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2009172_2009990		hypothetical protein		CDS	conserved hypothetical protein			
-	2009995	2010555	561	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_2010534_2009995		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	2010656	2011960	1305	Cytochrome P450 144	peg	gi|57116681|ref|NC_000962.2|_2010656_2011960		Cytochrome P450		CDS	cytochrome P450 family protein			
-	2012081	2012530	450	FIG00821218: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2012530_2012081		hypothetical protein		CDS	conserved hypothetical protein			
-	2012686	2014479	1794	FIG00821637: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2014479_2012686		Domain of unknown function (DUF4407).		CDS	conserved hypothetical protein			
+	2014699	2015262	564	FIG00820556: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2014699_2015262		hypothetical protein		CDS	conserved hypothetical protein			
-	2015302	2017485	2184	4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	peg	gi|57116681|ref|NC_000962.2|_2017485_2015302		4-alpha-glucanotransferase	2.4.1.25	CDS	4-alpha-glucanotransferase	2.4.1.25	malQ	
+	2017740	2019260	1521	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2017869_2019260		type VII secretion protein EccB, Actinobacterial		CDS	type VII secretion protein EccB		eccB	
+	2019257	2020564	1308	"Type VII secretion protein EccCa, FtsK/SpoIIIE family"	peg	gi|57116681|ref|NC_000962.2|_2019257_2020564		hypothetical protein		CDS	ESX-5 secretion system eccCb5 domain protein		eccCb5	
+	2020634	2023432	2799	"Type VII secretion protein EccCa, FtsK/SpoIIIE family"	peg	gi|57116681|ref|NC_000962.2|_2020634_2023432		type VII secretion protein EccCb		CDS	type VII secretion protein EccCb		eccCb	
-	2023447	2024628	1182	Cytochrome P450 143	peg	gi|57116681|ref|NC_000962.2|_2024628_2023447		Cytochrome P450		CDS	cytochrome P450 family protein			
+	2024828	2025031	204	Putative ferredoxin	peg	gi|57116681|ref|NC_000962.2|_2024828_2025031		Ferredoxin		CDS	4Fe-4S single cluster domain protein			
+	2025301	2026398	1098	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2025301_2026398		PPE-repeat proteins		CDS	PPE family protein			
+	2026477	2026776	300	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2026477_2026776		PE family.		CDS	PE family protein			
+	2026790	2027971	1182	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2026790_2027971		PPE-repeat proteins		CDS	PPE family protein			
+	2028386	2029477	1092	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2028425_2029477		PPE-repeat proteins		CDS	PPE family protein			
+	2029904	2030203	300	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2029904_2030203		PE family.		CDS	PE family protein			
+	2030347	2030523	177	ESAT-6-like protein EsxK	peg	gi|57116681|ref|NC_000962.2|_2030347_2030523		Proteins of 100 residues with WXG.		CDS	putative ESAT-6-like protein 7			
+	2030694	2030978	285	ESAT-6-like protein EsxL	peg	gi|57116681|ref|NC_000962.2|_2030694_2030978		Proteins of 100 residues with WXG.		CDS	putative ESAT-6-like protein 6			
+	2031066	2031968	903	FIG00820957: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2031066_2031968		EspG family.		CDS	espG family protein			
+	2032240	2033751	1512	Type VII secretion integral membrane protein EccD	peg	gi|57116681|ref|NC_000962.2|_2032240_2033751		type VII secretion integral membrane protein EccD		CDS	type VII secretion integral membrane protein EccD		eccD	
+	2033729	2035486	1758	Type VII secretion-associated serine protease mycosin	peg	gi|57116681|ref|NC_000962.2|_2033729_2035486		type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	
+	2035483	2036703	1221	Type VII secretion protein EccE	peg	gi|57116681|ref|NC_000962.2|_2035483_2036703		type VII secretion protein EccE		CDS	type VII secretion protein EccE		eccE	
+	2036700	2038532	1833	Type VII secretion AAA-ATPase EccA	peg	gi|57116681|ref|NC_000962.2|_2036700_2038532		type VII secretion AAA-ATPase EccA		CDS	type VII secretion AAA-ATPase EccA		eccA	
+	2039159	2039350	192	Lipoprotein LppT	peg	gi|57116681|ref|NC_000962.2|_2039159_2039350		hypothetical protein		CDS	hypothetical protein			
+	2039453	2041420	1968	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2039453_2041420		PPE-repeat proteins		CDS	PPE family protein			
+	2042001	2043272	1272	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2042001_2043272		PPE-repeat proteins		CDS	PPE family protein			
+	2043384	2044775	1392	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2043384_2044775		PPE-repeat proteins		CDS	PPE family protein			
-	2044923	2046875	1953	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2046875_2044923		PE family.		CDS	PE family protein			
-	2047023	2047349	327	FIG00819992: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2047349_2047023		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
+	2047595	2047769	175										
+	2048072	2048371	300	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2048072_2048371		PE family.		CDS	PE family protein			
+	2048386	2049597	1212	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2048386_2049597		PPE-repeat proteins		CDS	PPE family protein			
+	2049918	2051150	1233	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2049918_2051150		PPE-repeat proteins		CDS	PPE family protein			
+	2051213	2052688	1476	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2051282_2052688		PPE-repeat proteins		CDS	PPE family protein			
+	2052969	2053289	321	FIG00819992: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2052975_2053289		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
+	2053443	2054147	705	Mg(2+) transport ATPase protein C	peg	gi|57116681|ref|NC_000962.2|_2053443_2054147		Uncharacterized membrane protein		CDS	mgtC family protein			
-	2054157	2055359	1203	NADH dehydrogenase (EC 1.6.99.3)	peg	gi|57116681|ref|NC_000962.2|_2055350_2054157		NADH dehydrogenase, FAD-containing subunit	1.6.99.3	CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
-	2055681	2056112	432	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2056082_2055681		Domain of unknown function (DUF4189).		CDS	protein Rv1269c/MT1307			
+	2056479	2057423	945	Membrane-bound C-5 sterol desaturase Erg3	peg	gi|57116681|ref|NC_000962.2|_2056479_2057423		Sterol desaturase		CDS	fatty acid hydroxylase superfamily protein			
+	2057528	2058193	666	FIG00820470: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2057573_2058193		hypothetical protein		CDS	conserved hypothetical protein			
+	2058274	2058960	687	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_2058274_2058960		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	2059595	2061058	1464	"fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal:FAD dependent oxidoreductase"	peg	gi|57116681|ref|NC_000962.2|_2059595_2061058		Succinate dehydrogenase/fumarate reductase, flavoprotein subunit		CDS	FAD binding domain protein			
-	2061178	2062674	1497	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2062674_2061178		PE family.		CDS	PE family protein			
-	2062809	2064728	1920	Drugs-transport transmembrane ATP-binding protein ABC transporter	peg	gi|57116681|ref|NC_000962.2|_2064530_2062809		ABC-type uncharacterized transport system, permease and ATPase components		CDS	ABC transporter family protein			
+	2064565	2064789	225	FIG00823201: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2064565_2064789					hypothetical protein			
+	2064799	2066442	1644	COG0028: Thiamine pyrophosphate-requiring enzymes	peg	gi|57116681|ref|NC_000962.2|_2064799_2066442		Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]	2.2.1.6	CDS	thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			
+	2066547	2068883	2337	Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_2066547_2068883		protein translocase subunit secA		CDS	accessory Sec system translocase SecA2		secA2	
+	2069080	2069709	630	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	peg	gi|57116681|ref|NC_000962.2|_2069080_2069709		CDP-diacylglycerol-phosphatidylglycerol phosphatidyltransferase (EC 2.7.8.-)	2.7.8.5	CDS	CDP-alcohol phosphatidyltransferase family protein			
+	2069696	2070625	930	FIG030330: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2069696_2070625		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	2070687	2071019	333	FIG025307: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2070687_2071019		Uncharacterized conserved protein (small basic protein)		CDS	conserved hypothetical protein			
+	2071036	2071914	879	Division initiation protein	peg	gi|57116681|ref|NC_000962.2|_2071129_2071914		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	2071952	2072356	405	Glycine cleavage system H protein	peg	gi|57116681|ref|NC_000962.2|_2071952_2072356		glycine cleavage system H protein		CDS	glycine cleavage system H protein		gcvH	
+	2072596	2073084	489	FIG00672531: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2072596_2073084		FOG: FHA domain		CDS	oxoglutarate dehydrogenase inhibitor		odhI	
+	2073081	2073824	744	"Transcriptional regulator, MerR family"	peg	gi|57116681|ref|NC_000962.2|_2073081_2073824		Predicted transcriptional regulators		CDS	merR regulatory family protein			
+	2073943	2074437	495	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2073943_2074437		Uncharacterized conserved protein		CDS	bifunctional nuclease family protein			
+	2074886	2075518	633	Uncharacterized HTH-type transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_2074886_2075518		Predicted transcriptional regulators		CDS	merR HTH regulatory family protein			
+	2075571	2075828	258				hypothetical protein		CDS				
+	2075877	2078702	2826	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	peg	gi|57116681|ref|NC_000962.2|_2075877_2078702		glycine dehydrogenase (decarboxylating) alpha subunit (EC 1.4.4.2)/glycine dehydrogenase (decarboxylating) beta subunit (EC 1.4.4.2)	1.4.4.2	CDS	glycine dehydrogenase	1.4.4.2	gcvP	
-	2078929	2079789	861	Haloalkane dehalogenase 2 (EC 3.8.1.5)	peg	gi|57116681|ref|NC_000962.2|_2079789_2078929		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.8.1.5	CDS	alpha/beta hydrolase fold family protein			
+	2079932	2080696	765	Hydrolase	peg	gi|57116681|ref|NC_000962.2|_2079932_2080696		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
-	2080701	2082509	1809	Glutaryl-7-ACA acylase	peg	gi|57116681|ref|NC_000962.2|_2082509_2080701		putative hydrolase, CocE/NonD family		CDS	hydrolase CocE/NonD family protein			
-	2082603	2084636	2034	FIG00996932: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2084636_2082603		Bacterial extracellular solute-binding protein./von Willebrand factor type A domain.		CDS	bacterial extracellular solute-binding family protein			
-	2084756	2086981	2226	Malate synthase G (EC 2.3.3.9)	peg	gi|57116681|ref|NC_000962.2|_2086981_2084756		malate synthase (EC 2.3.3.9)	2.3.3.9	CDS	malate synthase G	2.3.3.9	glcB	
-	2087257	2087652	396	FIG00821467: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2087652_2087257		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
+	2087095	2087284	190							putative predicted protein			
-	2087649	2087912	264	FIG034581: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2087765_2087649		hypothetical protein		CDS	putative dNA-binding protein			
-	2087971	2089518	1548	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2089518_2087971		hypothetical protein		CDS	PE family protein			
-	2089681	2090718	1038	Magnesium and cobalt efflux protein CorC	peg	gi|57116681|ref|NC_000962.2|_2090718_2089681		Hemolysins and related proteins containing CBS domains		CDS	CBS domain protein			
-	2090718	2092085	1368	Magnesium and cobalt efflux protein CorC	peg	gi|57116681|ref|NC_000962.2|_2092085_2090718		Hemolysins and related proteins containing CBS domains		CDS	transporter associated domain protein			
-	2092259	2093698	1440	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	peg	gi|57116681|ref|NC_000962.2|_2093698_2092259		IMP dehydrogenase family protein	1.1.1.205	CDS	nitronate monooxygenase family protein			
-	2093731	2095188	1458	"6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)"	peg	gi|57116681|ref|NC_000962.2|_2095188_2093731		6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44)	1.1.1.44	CDS	6-phosphogluconate dehydrogenase	1.1.1.44	gnd	
-	2095218	2096168	951	"Peptidase M48, Ste24p precursor"	peg	gi|57116681|ref|NC_000962.2|_2096168_2095218		Zn-dependent protease with chaperone function		CDS	peptidase M48 family protein			
-	2096183	2096599	417	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_2096599_2096183		Predicted transcriptional regulator		CDS	transcriptional regulator BlaI		blaI	
+	2096877	2097299	423	Putative esterase	peg	gi|57116681|ref|NC_000962.2|_2096877_2097299		uncharacterized domain 1		CDS	putative esterase Rv1847/MT1895			
+	2097348	2097650	303	Urease gamma subunit (EC 3.5.1.5)	peg	gi|57116681|ref|NC_000962.2|_2097348_2097650		urease, gamma subunit	3.5.1.5	CDS	urease, gamma subunit	3.5.1.5	ureA	
+	2097647	2097961	315	Urease beta subunit (EC 3.5.1.5)	peg	gi|57116681|ref|NC_000962.2|_2097647_2097961		urease, beta subunit	3.5.1.5	CDS	urease, beta subunit	3.5.1.5	ureB	
+	2097961	2099694	1734	Urease alpha subunit (EC 3.5.1.5)	peg	gi|57116681|ref|NC_000962.2|_2097961_2099694		urease. Metallo peptidase. MEROPS family M38	3.5.1.5	CDS	urease, alpha subunit	3.5.1.5	ureC	
+	2099694	2100329	636	Urease accessory protein UreF	peg	gi|57116681|ref|NC_000962.2|_2099694_2100329		Urease accessory protein UreF		CDS	ureF family protein			
+	2100340	2101014	675	Urease accessory protein UreG	peg	gi|57116681|ref|NC_000962.2|_2100340_2101014		urease accessory protein UreG		CDS	urease accessory protein UreG		ureG	
+	2100968	2101648	681	Urease accessory protein UreD	peg	gi|57116681|ref|NC_000962.2|_2101022_2101648		Urease accessory protein UreH		CDS	ureD urease accessory family protein			
-	2101651	2103042	1392	NADH dehydrogenase (EC 1.6.99.3)	peg	gi|57116681|ref|NC_000962.2|_2102991_2101651		NADH dehydrogenase, FAD-containing subunit	1.6.99.3	CDS	glucose inhibited division A family protein			
-	2103184	2104107	924	Oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_2104107_2103184		probable F420-dependent oxidoreductase, Rv1855c family		CDS	putative F420-dependent oxidoreductase, Rv1855c family protein			
-	2104146	2104817	672	"Oxidoreductase, short-chain dehydrogenase/reductase family"	peg	gi|57116681|ref|NC_000962.2|_2104817_2104146		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
+	2104985	2105770	786	"Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)"	peg	gi|57116681|ref|NC_000962.2|_2104985_2105770		molybdenum ABC transporter, periplasmic molybdate-binding protein		CDS	molybdate ABC transporter, periplasmic molybdate-binding protein		modA	
+	2105773	2106567	795	Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)	peg	gi|57116681|ref|NC_000962.2|_2105830_2106567		molybdate ABC transporter, permease protein		CDS	molybdate ABC transporter, permease protein		modB	
+	2106574	2107683	1110	Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)	peg	gi|57116681|ref|NC_000962.2|_2106574_2107683		ABC-type sulfate/molybdate transport systems, ATPase component	3.6.3.29	CDS	ABC transporter family protein			
+	2107736	2108713	978	"Alanine and proline-rich secreted protein Apa, fibronectin attachment protein"	peg	gi|57116681|ref|NC_000962.2|_2107736_2108713		Fibronectin-attachment protein (FAP).		CDS	alanine and proline-rich secreted protein apa		apa	
+	2109165	2109470	306	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2109165_2109470		Predicted membrane protein		CDS	transglycosylase associated family protein			
+	2109544	2110584	1041	Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|57116681|ref|NC_000962.2|_2109544_2110584		zinc-binding alcohol dehydrogenase family protein	1.1.1.1	CDS	zinc-binding alcohol dehydrogenase family protein	1.-.-.-		
-	2110591	2111313	723	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2111313_2110591		Predicted protease of the Abi (CAAX) family		CDS	CAAX protease self-immunity family protein			
-	2111354	2112109	756	Uncharacterized protein conserved in bacteria	peg	gi|57116681|ref|NC_000962.2|_2112109_2111354		Uncharacterized protein conserved in bacteria		CDS	MOSC domain protein			
-	2112106	2112966	861	"Oxidoreductase, short-chain dehydrogenase/reductase family"	peg	gi|57116681|ref|NC_000962.2|_2112966_2112106		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
+	2113062	2115476	2415	Acyl-CoA transferases/carnitine dehydratase	peg	gi|57116681|ref|NC_000962.2|_2113062_2115476		Predicted acyl-CoA transferases/carnitine dehydratase		CDS	coA-transferase III family protein			
+	2115788	2117248	1461	Acetyl-CoA acetyltransferase	peg	gi|57116681|ref|NC_000962.2|_2115788_2117248		hypothetical protein	2.3.1.9	CDS	putative acetyl-CoA acetyltransferase			
+	2117347	2119446	2100	Phosphoenolpyruvate synthase (EC 2.7.9.2)	peg	gi|57116681|ref|NC_000962.2|_2117347_2119446		Nucleoside-diphosphate-sugar epimerases		CDS	NAD dependent epimerase/dehydratase family protein			
-	2119460	2120695	1236	putative reductase( EC:1.- )	peg	gi|57116681|ref|NC_000962.2|_2120695_2119460		NAD(P)H-nitrite reductase		CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
-	2120795	2121409	615	FIG00820353: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2121397_2120795		hypothetical protein		CDS	conserved hypothetical protein			
-	2121495	2121872	378	FIG00820081: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2121872_2121495		deazaflavin-dependent nitroreductase family protein		CDS	deazaflavin-dependent oxidoreductase, nitroreductase family protein			
-	2121907	2123151	1245	L-lactate dehydrogenase (EC 1.1.2.3)	peg	gi|57116681|ref|NC_000962.2|_2123151_2121907		L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases	1.1.2.3	CDS	nitronate monooxygenase family protein			
+	2123174	2123611	438	NTP pyrophosphohydrolases including oxidative damage repair enzymes	peg	gi|57116681|ref|NC_000962.2|_2123174_2123611		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	2123666	2124370	705	FIG00820973: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2123666_2124370		EthD domain.		CDS	ethD domain protein			
+	2124381	2124824	444	Pyridoxine 5'-phosphate oxidase	peg	gi|57116681|ref|NC_000962.2|_2124381_2124824		PPOX class probable F420-dependent enzyme		CDS	PPOX class putative F420-dependent enzyme family protein			
-	2124830	2125042	213	FIG00820183: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2125042_2124830								
+	2125340	2125819	480	Bacterioferritin (BFR)	peg	gi|57116681|ref|NC_000962.2|_2125340_2125819		bacterioferritin		CDS	bacterioferritin		bfr	
+	2125904	2127967	2064	EmrB/QacA family drug resistance transporter	peg	gi|57116681|ref|NC_000962.2|_2125904_2127967		Arabinose efflux permease		CDS	sugar (and other) transporter family protein			
+	2128013	2129374	1362	"Glutamine synthetase (EC 6.3.1.2), putative"	peg	gi|57116681|ref|NC_000962.2|_2128022_2129374		Glutamine synthetase	6.3.1.2	CDS	glutamine synthetase, catalytic domain protein			
+	2129377	2130513	1137	Amidohydrolase	peg	gi|57116681|ref|NC_000962.2|_2129377_2130513		Predicted metal-dependent hydrolase of the TIM-barrel fold		CDS	amidohydrolase family protein			
-	2130541	2131857	1317	Cytochrome P450 140	peg	gi|57116681|ref|NC_000962.2|_2131857_2130541		Cytochrome P450		CDS	cytochrome P450 family protein			
-	2131907	2132329	423	Lipoprotein LppE	peg	gi|57116681|ref|NC_000962.2|_2132329_2131907		hypothetical protein		CDS	mycobacterium 19 kDa lipoantigen family protein			
-	2132370	2133203	834	Probable short-chain type dehydrogenase/reductase (EC 1.1.-.-)	peg	gi|57116681|ref|NC_000962.2|_2133203_2132370		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
-	2133231	2133692	462	FIG00820653: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2133650_2133231		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
-	2133731	2134162	432	Resuscitation-promoting factor RpfC	peg	gi|57116681|ref|NC_000962.2|_2134153_2133731		Transglycosylase-like domain.		CDS	transglycosylase-like domain protein			
-	2134273	2134872	600	Periplasmic chorismate mutase I precursor (EC 5.4.99.5)	peg	gi|57116681|ref|NC_000962.2|_2134872_2134273		chorismate mutase, putative	5.4.99.5	CDS	putative chorismate mutase			
-	2134890	2135822	933	"Esterase, secreted fibronectin-binding protein antigen 85-B FbpB"	peg	gi|57116681|ref|NC_000962.2|_2135822_2134890		Predicted esterase		CDS	antigen 85-B	2.3.1.-	fbpB	
+	2135935	2136117	183	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2135998_2136117		hypothetical protein		CDS				
+	2136258	2137400	1143	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2136342_2137400		hypothetical protein		CDS	conserved hypothetical protein			
-	2137519	2138118	600	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2138079_2137519		Domain of unknown function (DUF4389).		CDS	conserved hypothetical protein			
-	2138444	2138617	174				O-Methyltransferase involved in polyketide biosynthesis		CDS				
+	2138319	2138498	180	FIG00820450: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2138319_2138498					hypothetical protein			
-	2138661	2139017	357	O-methyltransferase	peg	gi|57116681|ref|NC_000962.2|_2139017_2138661		O-Methyltransferase involved in polyketide biosynthesis		CDS	methyltransferase, TIGR00027 family protein	2.1.1.-		
-	2139076	2139627	552	FIG00820863: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2139627_2139076		Uncharacterized conserved protein		CDS	yceI-like domain protein			
+	2139741	2140148	408	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2139741_2140148		hypothetical protein		CDS	conserved hypothetical protein			
+	2140165	2140476	312	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2140165_2140476		hypothetical protein		CDS	conserved hypothetical protein			
+	2140486	2140704	219	FIG00822024: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2140486_2140704		hypothetical protein		CDS	conserved hypothetical protein			
-	2140739	2141869	1131	2-nitropropane dioxygenase (EC 1.13.11.32)	peg	gi|57116681|ref|NC_000962.2|_2141869_2140739		Dioxygenases related to 2-nitropropane dioxygenase		CDS	nitronate monooxygenase family protein			
-	2141917	2142090	174	FIG00823385: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2142090_2141917					hypothetical protein			
-	2143535	2144446	912				methyltransferase, putative, TIGR00027 family		CDS				
+	2142521	2143675	1155	Threonine dehydrogenase and related Zn-dependent dehydrogenases	peg	gi|57116681|ref|NC_000962.2|_2142521_2143675		Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	zinc-binding dehydrogenase family protein			
-	2144451	2144882	432	D-tyrosyl-tRNA(Tyr) deacylase	peg	gi|57116681|ref|NC_000962.2|_2144828_2144451		D-tyrosyl-tRNA(Tyr) deacylase	3.1.-	CDS	D-tyrosyl-tRNA(Tyr) deacylase	3.1.-.-	dtd	
-	2145214	2145735	522	Lipoprotein LppD	peg	gi|57116681|ref|NC_000962.2|_2145735_2145214		Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1		CDS	macro domain protein			
+	2144940	2145248	309	ExtraCellular Mutant; Ecm15p	peg	gi|57116681|ref|NC_000962.2|_2144940_2145248		uncharacterized protein, MTH1187 family		CDS	conserved hypothetical protein			
-	2146245	2147582	1338	lignin peroxidase LipJ	peg	gi|57116681|ref|NC_000962.2|_2147582_2146245		Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	putative LIGNIN PEROXIDASE LIPJ			
+	2145970	2146248	279	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2145970_2146248								
+	2147662	2148954	1293	"Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type S"	peg	gi|57116681|ref|NC_000962.2|_2147662_2148954		competence/damage-inducible protein cinA		CDS	competence/damage-inducible CinA C-terminal domain protein			
-	2149006	2150304	1299	Sialic acid-transport integral membrane protein NanT	peg	gi|57116681|ref|NC_000962.2|_2150274_2149006		putative sialic acid transporter		CDS	H+ symporter family protein			
+	2150364	2150768	405	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2150364_2150768		Predicted membrane protein		CDS	conserved hypothetical protein			
+	2150951	2151385	435	Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV	peg	gi|57116681|ref|NC_000962.2|_2151080_2151385		anti-anti-sigma factor		CDS	anti-anti-sigma factor family protein			
-	2151433	2152395	963	D-amino-acid oxidase (EC 1.4.3.3)	peg	gi|57116681|ref|NC_000962.2|_2152395_2151433		D-amino-acid:oxygen oxidoreductase (deaminating) (EC: 1.4.3.3)	1.4.3.3	CDS	FAD binding domain protein			
-	2152425	2152895	471	FIG00823749: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2152817_2152425		hypothetical protein		CDS	putative conserved membrane protein			
-	2153235	2153729	495	FIG042201: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2153708_2153235		Domain of unknown function (DUF4262).		CDS	conserved hypothetical protein			
-	2153889	2156111	2223	Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)	peg	gi|57116681|ref|NC_000962.2|_2156111_2153889		catalase/peroxidase HPI	1.11.1.21	CDS	catalase/peroxidase HPI	1.11.1.6	katG	
-	2156149	2156601	453	"Transcriptional regulator, FUR family"	peg	gi|57116681|ref|NC_000962.2|_2156541_2156149		Fe2+/Zn2+ uptake regulation proteins		CDS	ferric uptake regulator family protein			
-	2156706	2157320	615	Phosphatidylethanolamine-binding protein	peg	gi|57116681|ref|NC_000962.2|_2157311_2156706		Phospholipid-binding protein		CDS	phosphatidylethanolamine-binding family protein			
-	2157382	2157987	606	Phosphatidylethanolamine-binding protein	peg	gi|57116681|ref|NC_000962.2|_2157876_2157382		phospholipid-binding protein, PBP family		CDS	phosphatidylethanolamine-binding family protein			
-	2158087	2159406	1320	Oxidoreductase FadB5	peg	gi|57116681|ref|NC_000962.2|_2159091_2158087		NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	zinc-binding dehydrogenase family protein			
-	2159470	2159682	213				hypothetical protein		CDS				
-	2159921	2160328	408	FIG00820307: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2160328_2159921		hypothetical protein		CDS	conserved hypothetical protein			
+	2159191	2159943	753	Fumarylacetoacetase (EC 3.7.1.2)	peg	gi|57116681|ref|NC_000962.2|_2159191_2159943					metallo-beta-lactamase superfamily protein			
+	2160463	2161566	1104	"Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2"	peg	gi|57116681|ref|NC_000962.2|_2160463_2161566		Isocitrate lyase	4.1.3.1	CDS	isocitrate lyase family protein			
+	2161536	2162762	1227	"Isocitrate lyase (EC 4.1.3.1), group III, Mycobacterial type ICL2"	peg	gi|57116681|ref|NC_000962.2|_2161536_2162762		Isocitrate lyase		CDS	isocitrate lyase family protein			
-	2162932	2167344	4413	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2167344_2162932		PPE-repeat proteins		CDS	PPE family protein			
+	2162834	2163016	183				hypothetical protein		CDS				
-	2167649	2170612	2964	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2170600_2167649		PPE-repeat proteins		CDS	PPE family protein			
-	2171061	2171525	465	FIG00823285: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2171453_2171061		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	2171623	2172486	864	Acyltransferase family protein	peg	gi|57116681|ref|NC_000962.2|_2171623_2172486		1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	diacylglycerol acyltransferase family protein			
-	2172524	2173795	1272	Lipoprotein LppF	peg	gi|57116681|ref|NC_000962.2|_2173795_2172524		Phosphoserine phosphatase		CDS	haloacid dehalogenase-like hydrolase family protein			
+	2174100	2175182	1083	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg	gi|57116681|ref|NC_000962.2|_2174100_2175182		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
+	2175173	2176513	1341	Lipase LipD	peg	gi|57116681|ref|NC_000962.2|_2175284_2176513		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
-	2176550	2176930	381	FIG00827133: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2176930_2176550		hypothetical protein		CDS	putative membrane protein			
+	2177087	2178949	1863	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_2177087_2178949		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	long-chain-fatty-acid--AMP ligase FadD32	6.2.1.-	fadD32	
-	2178957	2179436	480	Immunogenic protein MPT63/MPB63 precursor	peg	gi|57116681|ref|NC_000962.2|_2179436_2178957		Domain of unknown function (DUF1942).		CDS	immunogenic protein MPT63		mpt63	
+	2179673	2180446	774	Putative uncharacterized protein BCG_1966	peg	gi|57116681|ref|NC_000962.2|_2179673_2180446		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	2180450	2181217	768	Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_2181217_2180450		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	sorbose reductase SOU1	1.1.1.289	SOU1	
-	2181262	2181906	645	FIG00821384: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2181906_2181262					conserved hypothetical protein			
-	2181918	2182442	525	ThiJ/PfpI family protein	peg	gi|57116681|ref|NC_000962.2|_2182442_2181918		Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain		CDS	amidotransferase family protein			
-	2182460	2182690	231	"Transcriptional regulator, AraC family"	peg	gi|57116681|ref|NC_000962.2|_2182690_2182460		Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
-	2182687	2182965	279	"Transcriptional regulator, AraC family"	peg	gi|57116681|ref|NC_000962.2|_2182965_2182687		hypothetical protein		CDS	putative tRANSCRIPTIONAL REGULATORY PROTEIN			
-	2183866	2184957	1092	Butyryl-CoA dehydrogenase (EC 1.3.99.2)	peg	gi|57116681|ref|NC_000962.2|_2184957_2183866		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
+	2183372	2183869	498	"Thiol peroxidase, Tpx-type (EC 1.11.1.15)"	peg	gi|57116681|ref|NC_000962.2|_2183372_2183869		thiol peroxidase (atypical 2-Cys peroxiredoxin) (EC 1.11.1.5)	1.11.1.15	CDS	putative thiol peroxidase			
-	2184959	2186188	1230	Butyryl-CoA dehydrogenase (EC 1.3.99.2)	peg	gi|57116681|ref|NC_000962.2|_2186188_2184959		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
-	2186203	2187159	957	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_2187159_2186203		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	putative enoyl-CoA hydratase domain protein			
+	2187315	2188493	1179	Monooxygenase component A	peg	gi|57116681|ref|NC_000962.2|_2187315_2188493		Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases		CDS	luciferase-like monooxygenase family protein			
+	2188496	2191015	2520	"Monooxygenase, FAD- and [2Fe-2S]-containing component B"	peg	gi|57116681|ref|NC_000962.2|_2188496_2191015		2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases		CDS	2Fe-2S iron-sulfur cluster binding domain protein			
+	2191027	2192097	1071	Monooxygenase component C / Probable epoxide hydrolase EphB (EC 3.3.2.9)	peg	gi|57116681|ref|NC_000962.2|_2191027_2192097		epoxide hydrolase. Serine peptidase. MEROPS family S33		CDS	alpha/beta hydrolase fold family protein			
+	2192094	2192609	516	Nitrilotriacetate monooxygenase component B (EC 1.14.13.-)	peg	gi|57116681|ref|NC_000962.2|_2192094_2192609		Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	flavin reductase like domain protein			
+	2192606	2193667	1062	"3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)"	peg	gi|57116681|ref|NC_000962.2|_2192606_2193667		3,4-dihydroxy-2-butanone 4-phosphate synthase	3.5.4.25, 4.1.99.12	CDS	3,4-dihydroxy-2-butanone 4-phosphate synthase family protein			
+	2193664	2194434	771	short-chain type dehydrogenase-reductase	peg	gi|57116681|ref|NC_000962.2|_2193664_2194434		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
-	2194644	2194997	354	"Death on curing protein, Doc toxin"	peg	gi|57116681|ref|NC_000962.2|_2194997_2194644		Growth inhibitor	3.1.-	CDS	toxin MazF5	3.1.-.-	mazF5	
-	2194970	2195347	378	"Prevent host death protein, Phd antitoxin"	peg	gi|57116681|ref|NC_000962.2|_2195347_2194970		hypothetical protein		CDS	antitoxin MazE5		mazE5	
-	2195344	2195829	486	FIG033348: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2195829_2195344		SEC-C motif.		CDS	SEC-C motif family protein			
+	2195905	2197353	1449	Partial REP13E12 repeat protein	peg	gi|57116681|ref|NC_000962.2|_2195989_2197353		Domain of unknown function (DUF222)./HNH endonuclease.		CDS	HNH endonuclease family protein			
+	2197631	2197849	219	FIG00822138: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2197631_2197849		hypothetical protein		CDS	hypothetical protein			
+	2198024	2198425	402	FIG00820712: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2198024_2198425		hypothetical protein		CDS	helicase domain protein			
-	2198714	2199064	351	FIG00820058: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2199064_2198714		hypothetical protein		CDS	conserved hypothetical protein			
-	2199075	2199977	903	FIG032369: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2199977_2199075		hypothetical protein		CDS	conserved hypothetical protein			
-	2199998	2200189	192	FIG032435: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2200189_2199998		hypothetical protein		CDS	putative transmembrane protein			
-	2200190	2200486	297	FIG00830660: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2200318_2200190		hypothetical protein		CDS	hypothetical protein			
+	2200714	2200941	228	FIG00820949: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2200714_2200941		Plasmid stability protein		CDS	conserved hypothetical protein			
+	2200938	2201249	312	FIG00821374: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2200938_2201249		hypothetical protein		CDS	putative ribonuclease VapC14			
+	2201358	2201579	222	FIG00820722: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2201358_2201579		YjzC-like protein.		CDS	yjzC-like family protein			
+	2201743	2202096	354	FIG00822499: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2201743_2202096		Phage-related protein		CDS	toxin HigB		higB	
+	2202138	2202587	450	Possible transcriptional regulatory protein	peg	gi|57116681|ref|NC_000962.2|_2202138_2202587		Predicted transcriptional regulator with C-terminal CBS domains		CDS	antitoxin HigA		higA	
-	2203018	2203632	615				hypothetical protein		CDS				
+	2202584	2203129	546	FIG00821415: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2202584_2203129		hypothetical protein		CDS	conserved hypothetical protein			
+	2203186	2203338	153	FIG00820831: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2203186_2203338					putative predicted protein			
-	2203457	2203663	207	FIG00831360: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2203663_2203457					conserved hypothetical protein			
-	2203681	2203977	297	plasmid stabilization protein ParE	peg	gi|57116681|ref|NC_000962.2|_2203977_2203681		Plasmid stabilization system protein		CDS	toxin ParE1		parE1	
-	2203974	2204225	252	Antitoxin ParD1	peg	gi|57116681|ref|NC_000962.2|_2204225_2203974		putative addiction module antidote protein, CC2985 family		CDS	antitoxin ParD1		parD1	
+	2204365	2204706	342	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2204365_2204706		hypothetical protein		CDS	conserved hypothetical protein			
-	2204866	2205273	408	FIG00820878: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2205273_2204866		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC35			
-	2205277	2205549	273	FIG00823469: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2205540_2205277		prevent-host-death family protein		CDS	prevent-host-death family protein			
-	2205582	2206802	1221	"Transcriptional repressor Mce3R, TetR family"	peg	gi|57116681|ref|NC_000962.2|_2206745_2205582		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	2206950	2207207	258				hypothetical protein		CDS				
+	2207688	2208497	810	Conserved hypothetical integral membrane protein YrbE1A	peg	gi|57116681|ref|NC_000962.2|_2207688_2208497		ABC-type transport system involved in resistance to organic solvents, permease component		CDS	permease family protein			
+	2208507	2209322	816	Conserved hypothetical integral membrane protein YrbE1B	peg	gi|57116681|ref|NC_000962.2|_2208546_2209322		ABC-type transport system involved in resistance to organic solvents, permease component		CDS	permease family protein			
+	2209327	2210604	1278	MCE-family protein Mce1A	peg	gi|57116681|ref|NC_000962.2|_2209354_2210604		virulence factor Mce family protein		CDS	mce related family protein			
+	2210601	2211629	1029	MCE-family protein Mce1B	peg	gi|57116681|ref|NC_000962.2|_2210625_2211629		virulence factor Mce family protein		CDS	mce related family protein			
+	2211614	2212858	1245	MCE-family protein Mce1C	peg	gi|57116681|ref|NC_000962.2|_2211626_2212858		virulence factor Mce family protein		CDS	mce related family protein			
+	2212855	2214126	1272	MCE-family protein Mce1D	peg	gi|57116681|ref|NC_000962.2|_2212855_2214126		virulence factor Mce family protein		CDS	mce related family protein			
+	2214123	2215256	1134	MCE-family lipoprotein LprK (MCE-family lipoprotein Mce1e)	peg	gi|57116681|ref|NC_000962.2|_2214123_2215256		virulence factor Mce family protein		CDS	mce related family protein			
+	2215257	2216570	1314	MCE-family protein Mce1F	peg	gi|57116681|ref|NC_000962.2|_2215257_2216570		virulence factor Mce family protein		CDS	mce related family protein			
+	2216592	2217167	576	FIG00821219: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2216592_2217167		hypothetical protein		CDS	conserved hypothetical protein			
+	2217164	2217646	483	MCE associated membrane protein	peg	gi|57116681|ref|NC_000962.2|_2217164_2217646		hypothetical protein		CDS	putative conserved Mce associated membrane protein			
+	2217659	2218036	378	FIG00820120: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2217659_2218036		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
+	2218052	2218717	666	FIG00821319: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2218082_2218717		hypothetical protein		CDS	conserved hypothetical protein			
-	2218844	2219251	408	FIG00820804: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2219230_2218844		YacP-like NYN domain.		CDS	yacP-like NYN domain protein			
+	2219754	2220800	1047	Zn-dependent protease with chaperone function	peg	gi|57116681|ref|NC_000962.2|_2219754_2220800		Zn-dependent protease with chaperone function		CDS	peptidase M48 family protein			
-	2221719	2223164	1446	Amino acid permease	peg	gi|57116681|ref|NC_000962.2|_2223164_2221719		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	amino acid permease family protein			
+	2220908	2221756	849	FIG00822747: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2220908_2221756		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
-	2223343	2224029	687	Immunogenic protein MPT64/MPB64 precursor	peg	gi|57116681|ref|NC_000962.2|_2224029_2223343		Protein of unknown function (DUF3298).		CDS	immunogenic protein MPT64		mpt64	
-	2224220	2225188	969	"Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)"	peg	gi|57116681|ref|NC_000962.2|_2225188_2224220		ribonucleoside-diphosphate reductase class Ib beta subunit (EC 1.17.4.1)	1.17.4.1	CDS	ribonucleoside-diphosphate reductase subunit beta nrdF1	1.17.4.1	nrdF1	
-	2225413	2225832	420	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_2225832_2225413		Uncharacterized protein conserved in bacteria		CDS	PIN domain protein			
-	2225841	2226128	288	FIG00824259: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2226101_2225841		Uncharacterized protein conserved in bacteria		CDS	rv0623-like transcription factor family protein			
-	2227908	2228561	654	Cutinase precursor Cfp21 (EC 3.1.1.74)	peg	gi|57116681|ref|NC_000962.2|_2228525_2227908		Type IV secretory pathway, VirJ component	3.1.1.74	CDS	cutinase family protein			
+	2226244	2227920	1677	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2226244_2227920		PE family.		CDS	PE family protein			
+	2228676	2228906	231	FIG00821477: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2228688_2228906		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	2228991	2229902	912	HTH-type transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_2229902_2228991		transcriptional regulator, ArgP family		CDS	conserved hypothetical protein			
+	2230011	2230610	600	"Transporter, LysE family"	peg	gi|57116681|ref|NC_000962.2|_2230011_2230610		L-lysine exporter		CDS	L-lysine exporter family protein		lysE	
+	2230643	2230804	162	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2230643_2230804								
-	2231070	2231312	243	FIG00823549: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2231219_2231070		hypothetical protein		CDS	hypothetical protein			
+	2231680	2232219	540	rRNA adenine N-6-methyltransferase (EC 2.1.1.48)	peg	gi|57116681|ref|NC_000962.2|_2231680_2232219		Dimethyladenosine transferase (rRNA methylation)		CDS	methyltransferase domain protein			
-	2232739	2233299	561	FIG00820930: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2233299_2232739		Uncharacterized conserved protein		CDS	RES domain protein			
-	2233296	2233637	342	FIG036251: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2233637_2233296		Protein of unknown function (DUF2384).		CDS	conserved hypothetical protein			
-	2233881	2234216	336				hypothetical protein		CDS				
+	2233723	2233980	258	FIG00821945: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2233723_2233980		hypothetical protein		CDS	conserved hypothetical protein			
-	2234305	2234649	345				Growth inhibitor	3.1.-	CDS	mRNA interferase MazF6	3.1.-.-	mazF6	
+	2234393	2234593	201	FIG00820798: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2234393_2234593					hypothetical protein			
-	2234643	2234891	249	Programmed cell death antitoxin YdcD	peg	gi|57116681|ref|NC_000962.2|_2234891_2234643		hypothetical protein		CDS	antitoxin MazE6		mazE6	
-	2234991	2237306	2316	"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)"	peg	gi|57116681|ref|NC_000962.2|_2237240_2234991		heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	3.6.3.-	CDS	cadmium-translocating P-type ATPase	3.6.3.3	cadA	
-	2237303	2237575	273	FIG00821195: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2237575_2237303		Protein of unknown function (DUF1490).		CDS	conserved hypothetical protein			
-	2237628	2237984	357	"Transcriptional regulator, ArsR family"	peg	gi|57116681|ref|NC_000962.2|_2237969_2237628		transcriptional regulator, ArsR family		CDS	HTH-type transcriptional regulator CmtR		cmtR	
+	2238141	2238908	768	FIG00820119: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2238141_2238908		Uncharacterized conserved protein		CDS	hemerythrin HHE cation binding domain protein			
+	2239004	2239957	954	Universal stress protein family	peg	gi|57116681|ref|NC_000962.2|_2239004_2239957		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress protein Rv1996/MT2052			
+	2240171	2242876	2706	Probable cation-transporting ATPase F (EC 3.6.3.-)	peg	gi|57116681|ref|NC_000962.2|_2240171_2242876		ATPase, P-type (transporting), HAD superfamily, subfamily IC	3.6.3.-	CDS	putative cation-transporting ATPase F			
-	2242945	2243721	777	PEP phosphonomutase and related enzymes	peg	gi|57116681|ref|NC_000962.2|_2243721_2242945		PEP phosphonomutase and related enzymes		CDS	phosphoenolpyruvate phosphomutase family protein			
-	2243816	2245138	1323	Uncharacterized transporter Rv1999c/MT2055	peg	gi|57116681|ref|NC_000962.2|_2245078_2243816		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	amino acid permease family protein			
+	2245380	2246822	1443	FIG029313: hypothetical protein Rv2000/MT2056	peg	gi|57116681|ref|NC_000962.2|_2245380_2246822		Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes		CDS	NAD(P)-binding Rossmann-like domain protein			
+	2246832	2247584	753	"Acyl-ACP thioesterase, FatA"	peg	gi|57116681|ref|NC_000962.2|_2246832_2247584		Acyl-ACP thioesterase		CDS	acyl-ACP thioesterase family protein			
+	2247606	2248442	837	3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase (EC 1.1.1.53)	peg	gi|57116681|ref|NC_000962.2|_2247606_2248442		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.53	CDS	3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase	1.1.1.53	fabG3	
-	2248563	2249270	708	FIG147732: hypothetical protein Rv2003c/MT2059	peg	gi|57116681|ref|NC_000962.2|_2249270_2248563		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
-	2249260	2249457	198	Phosphoenolpyruvate synthase (EC 2.7.9.2)	peg	gi|57116681|ref|NC_000962.2|_2249457_2249260		hypothetical protein		CDS	putative phosphoenolpyruvate synthase			
-	2249478	2250974	1497	FIG037390: hypothetical protein Rv2004c/MT2060	peg	gi|57116681|ref|NC_000962.2|_2250974_2249478		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2250996	2251883	888	Universal stress protein family	peg	gi|57116681|ref|NC_000962.2|_2251883_2250996		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress protein Rv2005c/MT2061			
+	2252002	2255985	3984	PROBABLE TREHALOSE-6-PHOSPHATE PHOSPHATASE OTSB1 (TREHALOSE-PHOSPHATASE) (TPP)( EC:3.2.1.28 )	peg	gi|57116681|ref|NC_000962.2|_2252002_2255985		trehalose 6-phosphatase (EC 3.1.3.12)	3.2.1.28	CDS	trehalose-phosphatase	3.1.3.12	otsB	
-	2256084	2256428	345	FdxA	peg	gi|57116681|ref|NC_000962.2|_2256428_2256084		Ferredoxin		CDS	ferredoxin		fdxA	
-	2256617	2257942	1326	AAA family ATPase	peg	gi|57116681|ref|NC_000962.2|_2257942_2256617		Predicted ATPase (AAA+ superfamily)		CDS	conserved hypothetical protein			
+	2258030	2258272	243	FIG00821114: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2258045_2258272		Transcription regulator of the Arc/MetJ class		CDS	antitoxin VapB15		vapB15	
+	2258273	2258671	399	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_2258273_2258671		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC15			
-	2258699	2258857	159	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2258857_2258699					hypothetical protein			
-	2258854	2259285	432	"Transcriptional regulator, MarR family"	peg	gi|57116681|ref|NC_000962.2|_2259285_2258854		Transcriptional regulators		CDS	marR family protein			
+	2259386	2259820	435	FIG00821333: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2259386_2259820		Phage envelope protein		CDS	conserved hypothetical protein			
-	2260021	2260260	240	putative helicase	peg	gi|57116681|ref|NC_000962.2|_2260260_2260021					putative helicase			
+	2259817	2260065	249	FIG00821066: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2259817_2260065					hypothetical protein			
-	2260257	2260577	321							putative predicted protein			
+	2260263	2260418	156	FIG00823619: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2260263_2260418								
+	2260665	2261144	480	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2260665_2261144		Transposase.		CDS	transposase family protein			
+	2261098	2261688	591	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2261098_2261688		Transposase and inactivated derivatives		CDS	transposase IS116/IS110/IS902 family protein			
-	2261816	2263072	1257	"Transcriptional regulator, IclR family"	peg	gi|57116681|ref|NC_000962.2|_2263072_2261816		Domain of unknown function (DUF222)./HNH endonuclease.		CDS	HNH endonuclease family protein			
+	2263390	2264001	612	FIG00820622: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2263390_2264001		hypothetical protein		CDS	conserved hypothetical protein			
+	2263998	2265038	1041	Zn peptidase with DNA binding	peg	gi|57116681|ref|NC_000962.2|_2263998_2265038		Predicted Zn peptidase		CDS	helix-turn-helix family protein			
+	2265271	2265999	729	FIG00821748: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2265271_2265999		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	2266055	2266405	351	FIG00823439: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2266163_2266405		hypothetical protein		CDS	conserved hypothetical protein			
-	2266421	2266708	288	Putative helicase	peg	gi|57116681|ref|NC_000962.2|_2266708_2266421		hypothetical protein		CDS	putative type III restriction protein res subunit			
-	2266805	2267110	306	"Transcriptional regulator, XRE family"	peg	gi|57116681|ref|NC_000962.2|_2267110_2266805		Predicted transcriptional regulators		CDS	helix-turn-helix family protein			
-	2267119	2267535	417	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2267484_2267119		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2267749	2268057	309	FIG00821878: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2268057_2267749		hypothetical protein		CDS	hypothetical protein			
-	2268693	2270240	1548	putative helicase	peg	gi|57116681|ref|NC_000962.2|_2270231_2268693		Predicted helicase		CDS	restriction endonuclease family protein			
-	2270750	2271748	999	Cobalt-zinc-cadmium resistance protein	peg	gi|57116681|ref|NC_000962.2|_2271748_2270750		cation diffusion facilitator family transporter		CDS	cation diffusion facilitator transporter family protein			
-	2271863	2272747	885	Universal stress protein family	peg	gi|57116681|ref|NC_000962.2|_2272747_2271863		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress protein MSMEG_3950			
-	2272787	2274508	1722	Histidine kinase response regulator	peg	gi|57116681|ref|NC_000962.2|_2274463_2272787		GAF domain./Histidine kinase./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.		CDS	response regulator	2.7.13.3	devS	
-	2274569	2275408	840	Universal stress protein family	peg	gi|57116681|ref|NC_000962.2|_2275408_2274569		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress family protein			
-	2275405	2276424	1020	Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)	peg	gi|57116681|ref|NC_000962.2|_2276424_2275405		6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11	CDS	putative phosphofructokinase pfkB			
-	2276441	2278486	2046	Erythromycin esterase homolog	peg	gi|57116681|ref|NC_000962.2|_2278486_2276441		Erythromycin esterase homolog		CDS	phosphoribosyl transferase domain protein			
-	2278498	2278932	435	14 kDa antigen (16 kDa antigen) (HSP 16.3)	peg	gi|57116681|ref|NC_000962.2|_2278932_2278498		Molecular chaperone (small heat shock protein)		CDS	alpha-crystallin		hspX	
+	2279129	2280124	996	"Dinucleotide-utilizing enzyme, Rv2032/acg (acr-coregulated gene)"	peg	gi|57116681|ref|NC_000962.2|_2279129_2280124		Nitroreductase family.		CDS	nitroreductase family protein			
-	2280240	2281082	843	FIG00820570: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2281082_2280240		Protein of unknown function (DUF3097).		CDS	conserved hypothetical protein			
+	2281294	2281617	324	"transcriptional regulator, ArsR family"	peg	gi|57116681|ref|NC_000962.2|_2281294_2281617		transcriptional regulator, ArsR family		CDS	bacterial regulatory , arsR family protein			
+	2281614	2282102	489	Putative uncharacterized protein BCG_2054	peg	gi|57116681|ref|NC_000962.2|_2281614_2282102		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	2282099	2282740	642	FIG00821723: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2282099_2282740		uncharacterized Actinobacterial protein TIGR03083		CDS	conserved hypothetical protein			
-	2282747	2283721	975	lysophospholipase-like family protein	peg	gi|57116681|ref|NC_000962.2|_2283643_2282747		Predicted esterase of the alpha-beta hydrolase superfamily		CDS	patatin-like phospholipase family protein			
-	2283723	2284796	1074	"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)"	peg	gi|57116681|ref|NC_000962.2|_2284796_2283723		carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	ABC transporter family protein			
-	2284799	2285641	843	Probable sugar-transport integral membrane protein ABC transporter	peg	gi|57116681|ref|NC_000962.2|_2285641_2284799		carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
-	2285628	2286530	903	Probable sugar-transport integral membrane protein ABC transporter	peg	gi|57116681|ref|NC_000962.2|_2286491_2285628		carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
-	2286527	2287846	1320	Probable sugar-binding lipoprotein	peg	gi|57116681|ref|NC_000962.2|_2287690_2286527		carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	bacterial extracellular solute-binding family protein			
-	2287884	2288681	798	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2288681_2287884		Nuclear transport factor 2 (NTF2) domain.		CDS	snoaL-like domain protein			
-	2288681	2289241	561	Nicotinamidase (EC 3.5.1.19)	peg	gi|57116681|ref|NC_000962.2|_2289241_2288681		Amidases related to nicotinamidase	3.5.1.-, 3.5.1.19	CDS	isochorismatase family protein			
-	2289282	2289632	351	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2289632_2289282		Protein of Unknown function (DUF2784).		CDS	conserved hypothetical protein			
-	2289685	2291190	1506	Probable carboxylesterase LipT (EC 3.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_2291190_2289685		Carboxylesterase type B	3.1.1.-	CDS	alpha/beta hydrolase fold family protein			
+	2291269	2291925	657	Probable lipoprotein lppI	peg	gi|57116681|ref|NC_000962.2|_2291269_2291925		hypothetical protein		CDS	putative lppI protein			
-	2291962	2294526	2565	Phosphoenolpyruvate synthase (EC 2.7.9.2)	peg	gi|57116681|ref|NC_000962.2|_2294526_2291962		Nucleoside-diphosphate-sugar epimerases		CDS	short chain dehydrogenase family protein			
-	2294531	2306986	12456	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	peg	gi|57116681|ref|NC_000962.2|_2306986_2294531		KR domain./Acyl transferase domain./Beta-ketoacyl synthase, C-terminal domain./Zinc-binding dehydrogenase./Phosphopantetheine attachment site.		CDS	malonyl CoA-acyl carrier protein transacylase	2.3.1.39	fabD	
-	2307293	2307595	303	FIG00822025: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2307595_2307293		hypothetical protein		CDS	conserved hypothetical protein			
-	2308131	2310920	2790	Apolipoprotein N-acyltransferase (EC 2.3.1.-) in lipid-linked oligosaccharide synthesis cluster / Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster	peg	gi|57116681|ref|NC_000962.2|_2310920_2308131		apolipoprotein N-acyltransferase	2.3.1.-	CDS	glycosyl transferase 2 family protein			
+	2307821	2308156	336	FIG00820327: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2307860_2308156		Domain of unknown function (DUF4109).		CDS	conserved hypothetical protein			
-	2310913	2312517	1605	Exoenzymes regulatory protein AepA in lipid-linked oligosaccharide synthesis cluster	peg	gi|57116681|ref|NC_000962.2|_2312517_2310913		Predicted metal-dependent hydrolase with the TIM-barrel fold		CDS	amidohydrolase family protein			
-	2312522	2313052	531	Cytoplasmic membrane protein FsxA	peg	gi|57116681|ref|NC_000962.2|_2313052_2312522		Protein affecting phage T7 exclusion by the F plasmid		CDS	fxsA cytoplasmic membrane family protein			
+	2313125	2313838	714	Dienelactone hydrolase family protein	peg	gi|57116681|ref|NC_000962.2|_2313125_2313838		Dienelactone hydrolase and related enzymes	3.1.1.45	CDS	dienelactone hydrolase family protein			
-	2314087	2314353	267	"SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent"	peg	gi|57116681|ref|NC_000962.2|_2314353_2314087		SSU ribosomal protein S18P		CDS	ribosomal protein S18		rpsR	
-	2314354	2314659	306	30S ribosomal protein S14	peg	gi|57116681|ref|NC_000962.2|_2314659_2314354		SSU ribosomal protein S14P		CDS	30S ribosomal protein S14		rpsN	
-	2314661	2314825	165	"LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent"	peg	gi|57116681|ref|NC_000962.2|_2314825_2314661		LSU ribosomal protein L33P		CDS	ribosomal protein L33		rpmG	
-	2314825	2315061	237	LSU ribosomal protein L28p	peg	gi|57116681|ref|NC_000962.2|_2315061_2314825		LSU ribosomal protein L28P		CDS	ribosomal protein L28		rpmB	
-	2315247	2315405	159	FIG00821360: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2315405_2315247					adhesion domain protein			
-	2315276	2315911	636				hypothetical protein		CDS				
+	2316279	2316680	402				ABC-type Mn2+/Zn2+ transport systems, permease components		CDS				
-	2316681	2317085	405	FIG00995176: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2317085_2316681		PPOX class probable F420-dependent enzyme, Rv2061 family		CDS	PPOX class putative F420-dependent enzyme, Rv2061 family protein	1.-.-.-		
+	2315459	2316709	1251	"Zinc ABC transporter, periplasmic-binding protein ZnuA"	peg	gi|57116681|ref|NC_000962.2|_2315459_2316709					periplasmic solute binding family protein			
-	2317169	2320753	3585	CobN component of cobalt chelatase involved in B12 biosynthesis	peg	gi|57116681|ref|NC_000962.2|_2320753_2317169		cobaltochelatase CobN subunit (EC 6.6.1.2)	6.6.1.2	CDS	cobaltochelatase, CobN subunit	6.6.1.2	cobN	
+	2320912	2321064	153	Programmed cell death antitoxin YdcD	peg	gi|57116681|ref|NC_000962.2|_2320912_2321064		hypothetical protein		CDS	putative antitoxin MazE7			
+	2321153	2321467	315	Programmed cell death toxin YdcE	peg	gi|57116681|ref|NC_000962.2|_2321153_2321467					toxin MazF7	3.1.-.-	mazF7	
+	2321451	2322542	1092	Cobalamin biosynthesis protein CobG	peg	gi|57116681|ref|NC_000962.2|_2321451_2322542		precorrin-3B synthase	1.14.13.83	CDS	precorrin-3B synthase	1.14.13.83	cobG	
+	2322552	2323178	627	Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	peg	gi|57116681|ref|NC_000962.2|_2322552_2323178		precorrin-8X methylmutase (EC 5.4.1.2)	5.4.1.2	CDS	precorrin-8X methylmutase family protein			
-	2324647	2325870	1224				Methyltransferase domain.		CDS				
+	2323175	2324701	1527	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) / Cobalt-precorrin-3b C17-methyltransferase	peg	gi|57116681|ref|NC_000962.2|_2323175_2324701		precorrin-3 methyltransferase (EC 2.1.1.131)/precorrin-2 C20-methyltransferase (EC 2.1.1.130)/cobalt-factor II C20-methyltransferase (EC 2.1.1.151)	2.1.1.131, 2.1.1.130	CDS	precorrin-2 C20-methyltransferase	2.1.1.130	cobI	
-	2325886	2326809	924	Beta-lactamase class A	peg	gi|57116681|ref|NC_000962.2|_2326809_2325886		Beta-lactamase class A	3.5.2.6	CDS	beta-lactamase FAR-1	3.5.2.6	bla	
-	2327491	2328225	735	Cobalt-precorrin-6x reductase (EC 1.3.1.54)	peg	gi|57116681|ref|NC_000962.2|_2328225_2327491		precorrin-6A reductase (EC 1.3.1.54)	1.3.1.54	CDS	precorrin-6x reductase	1.3.1.54	cobK	
+	2326938	2327501	564	RNA polymerase sigma-54 factor RpoN	peg	gi|57116681|ref|NC_000962.2|_2326944_2327501		RNA polymerase sigma factor, sigma-70 family		CDS	putative RNA polymerase sigma-C factor			
-	2328222	2328995	774	Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	peg	gi|57116681|ref|NC_000962.2|_2328995_2328222		precorrin-4 C11-methyltransferase (EC 2.1.1.133)	2.1.1.133	CDS	precorrin-4 C11-methyltransferase	2.1.1.133	cobM	
-	2328974	2330146	1173	Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_2330146_2328974		precorrin-6Y C5,15-methyltransferase (decarboxylating) (EC 2.1.1.132)	1.-, 2.1.1.132	CDS	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit	2.1.1.132	cbiT	
-	2330214	2330963	750	"Oxidoreductase, short-chain dehydrogenase/reductase family"	peg	gi|57116681|ref|NC_000962.2|_2330963_2330214		Short-chain dehydrogenases of various substrate specificities		CDS	short chain dehydrogenase family protein			
+	2330993	2331406	414	FIG01000472: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2330993_2331406		PPOX class probable F420-dependent enzyme		CDS	conserved hypothetical protein			
-	2331416	2332843	1428	FIG00822116: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2332843_2331416		hypothetical protein		CDS	conserved hypothetical protein			
-	2333037	2333201	165	FIG00823547: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2333201_2333037		hypothetical protein		CDS	conserved hypothetical protein			
-	2333323	2334294	972	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2334294_2333323		hypothetical protein		CDS	conserved hypothetical protein			
-	2334295	2334594	300	FIG00823030: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2334594_2334295					conserved hypothetical protein			
+	2335059	2335373	315	FIG00822376: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2335059_2335373		Protein of unknown function (DUF2563).		CDS	conserved hypothetical protein			
+	2335355	2337325	1971	FIG033455: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2335355_2337325		Uncharacterized protein involved in exopolysaccharide biosynthesis		CDS	alpha/beta hydrolase family protein			
+	2337297	2337869	573	Lipoprotein LppJ	peg	gi|57116681|ref|NC_000962.2|_2337306_2337869		hypothetical protein		CDS	putative lipoprotein lppJ			
+	2337922	2338188	267	FIG031423: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2337922_2338188					conserved hypothetical protein			
+	2338267	2338719	453	POSSIBLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_2338267_2338719		hypothetical protein		CDS	conserved hypothetical protein			
-	2338934	2339239	306				hypothetical protein		CDS				
-	2339298	2339486	189				hypothetical protein		CDS				
+	2338709	2340874	2166	FIG031423: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2338709_2340874		hypothetical protein		CDS	conserved hypothetical protein			
+	2340871	2341815	945	FIG036988: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2340871_2341815		hypothetical protein		CDS	conserved hypothetical protein			
+	2341802	2342944	1143	FIG00821033: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2341808_2342944		hypothetical protein		CDS	conserved hypothetical protein			
+	2343027	2343332	306	FIG00821326: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2343027_2343332					conserved hypothetical protein			
+	2343311	2343916	606	putative transposase	peg	gi|57116681|ref|NC_000962.2|_2343311_2343916		HTH-like domain.		CDS	HTH-like domain protein			
+	2344411	2346180	1770	Serine/threonine protein kinase PknJ (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_2344411_2346180		PknH-like extracellular domain./Protein kinase domain.	2.7.11.1	CDS	kinase domain protein			
-	2346197	2347411	1215	Probable dipeptidase PepE (EC 3.4.13.-)	peg	gi|57116681|ref|NC_000962.2|_2347411_2346197		Xaa-Pro aminopeptidase	3.4.13.-	CDS	metallopeptidase M24 family protein			
+	2347598	2348554	957	putative 5'-3' exonuclease	peg	gi|57116681|ref|NC_000962.2|_2347613_2348554		5'-3' exonuclease (including N-terminal domain of PolI)		CDS	5'-3' exonuclease, C-terminal SAM fold family protein			
-	2348558	2349292	735	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2349292_2348558		Domain of unknown function (DUF4333).		CDS	conserved hypothetical protein			
-	2349334	2352054	2721	FIG005666: putative helicase	peg	gi|57116681|ref|NC_000962.2|_2352054_2349334		Superfamily II RNA helicase	3.6.4.-	CDS	DEAD/DEAH box helicase family protein			
-	2352103	2353029	927	Twin-arginine translocation protein TatC	peg	gi|57116681|ref|NC_000962.2|_2353029_2352103		Twin arginine targeting (Tat) protein translocase TatC		CDS	twin arginine-targeting protein translocase TatC		tatC	
-	2353046	2353297	252	Twin-arginine translocation protein TatA	peg	gi|57116681|ref|NC_000962.2|_2353297_2353046		twin arginine-targeting protein translocase, TatA/E family		CDS	twin arginine-targeting translocase, TatA/E family protein		tatA	
-	2353365	2354315	951	FIG019733: possible DNA-binding protein	peg	gi|57116681|ref|NC_000962.2|_2354315_2353365		Predicted transcriptional regulator		CDS	protein pafC		pafC	
-	2354312	2355310	999	FIG005453: Putative DeoR-family transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_2355310_2354312		Predicted transcriptional regulator		CDS	protein pafB		pafB	
-	2355319	2356677	1359	"Pup ligase PafA, possible component of postulated heterodimer PafA-PafA'"	peg	gi|57116681|ref|NC_000962.2|_2356662_2355319		proteasome accessory factor PafA	6.3.2.-	CDS	proteasome accessory factor PafA	6.3.2.-	pafA	
-	2356729	2357901	1173	FIG033545: PE-PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_2357901_2356729		hypothetical protein		CDS	hypothetical protein			
-	2357907	2358206	300	FIG033545: PE-PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_2358206_2357907		PE family.		CDS	PE family protein			
+	2358386	2360041	1656	FIG034520: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2358386_2360041		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
+	2360240	2363281	3042	"Helicase, SNF2/RAD54 family"	peg	gi|57116681|ref|NC_000962.2|_2360240_2363281		Superfamily II DNA/RNA helicases, SNF2 family		CDS	helicase conserved C-terminal domain protein			
-	2364086	2364520	435	FIG00822827: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2364520_2364086		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC37			
+	2363274	2364107	834	FIG006557: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2363274_2364107		Uncharacterized conserved protein		CDS	SWIM zinc finger family protein			
-	2364527	2364781	255	FIG00820845: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2364763_2364527		hypothetical protein		CDS	putative copG DNA-binding domain protein			
-	2364797	2365054	258	FIG00823214: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2365054_2364797		hypothetical protein		CDS	hypothetical protein			
+	2365465	2365791	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2365465_2365791		Transposase and inactivated derivatives		CDS	transposase family protein			
+	2365842	2366726	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2365842_2366726		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	2367359	2367655	297	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2367431_2367655		PE family.		CDS	PE family protein			
+	2367711	2368442	732	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2367711_2368442		PPE family.		CDS	conserved hypothetical protein			
-	2368983	2369729	747	"Proteasome subunit alpha (EC 3.4.25.1), bacterial"	peg	gi|57116681|ref|NC_000962.2|_2369729_2368983		proteasome, alpha subunit, bacterial type	3.4.25.1	CDS	proteasome, alpha subunit	3.4.25.1	prcA	
-	2369726	2370601	876	"Proteasome subunit beta (EC 3.4.25.1), bacterial"	peg	gi|57116681|ref|NC_000962.2|_2370601_2369726		proteasome endopeptidase complex, beta component (EC 3.4.25.1). Threonine peptidase. MEROPS family T01B	3.4.25.1	CDS	proteasome, beta subunit	3.4.25.1	prcB	
-	2370598	2370792	195	Prokaryotic ubiquitin-like protein Pup	peg	gi|57116681|ref|NC_000962.2|_2370792_2370598		ubiquitin-like protein Pup		CDS	prokaryotic ubiquitin-like protein Pup		pup	
-	2370905	2372569	1665	"Pup ligase PafA' paralog, possible component of postulated heterodimer PafA-PafA'"	peg	gi|57116681|ref|NC_000962.2|_2372569_2370905		proteasome accessory factor PafA2	6.3.2.-	CDS	proteasome accessory factor PafA2	6.3.2.-		
+	2372448	2372618	171	FIG00822881: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2372448_2372618								
+	2372630	2373823	1194	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2372678_2373823		hypothetical protein		CDS	putative membrane protein			
+	2373816	2374457	642	FIG00821521: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2373816_2374457		hypothetical protein		CDS	conserved hypothetical protein			
-	2374461	2376308	1848	Bacterial proteasome-activating AAA-ATPase (PAN)	peg	gi|57116681|ref|NC_000962.2|_2376308_2374461		proteasome ATPase		CDS	proteasome ATPase	3.6.4.8	arc	
+	2376571	2377140	570	Probable conserved lipoprotein lppK	peg	gi|57116681|ref|NC_000962.2|_2376571_2377140		hypothetical protein		CDS	putative lipoprotein lppK			
+	2377148	2377441	294	YlxP-like protein	peg	gi|57116681|ref|NC_000962.2|_2377148_2377441		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2377470	2378312	843	RNA methyltransferase	peg	gi|57116681|ref|NC_000962.2|_2378312_2377470		tRNA (adenine-58-N(1)-) methyltransferase (EC 2.1.1.36)		CDS	tRNA (adenine-N(1)-)-methyltransferase TrmI		trmI	
+	2378386	2379222	837	RecB family exonuclease	peg	gi|57116681|ref|NC_000962.2|_2378386_2379222		RecB family exonuclease		CDS	conserved hypothetical protein			
-	2379245	2379727	483	Hypothetical membrane protein Rv2120c	peg	gi|57116681|ref|NC_000962.2|_2379727_2379245		Predicted membrane protein		CDS	putative membrane protein			
-	2379806	2380660	855	ATP phosphoribosyltransferase (EC 2.4.2.17)	peg	gi|57116681|ref|NC_000962.2|_2380660_2379806		ATP phosphoribosyltransferase (homohexameric) (EC 2.4.2.17)	2.4.2.17	CDS	ATP phosphoribosyltransferase	2.4.2.17	hisG	
-	2380663	2380944	282	Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	peg	gi|57116681|ref|NC_000962.2|_2380944_2380663		phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	3.6.1.31	CDS	phosphoribosyl-ATP diphosphatase	3.6.1.31	hisE	
-	2382489	2386067	3579	5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)	peg	gi|57116681|ref|NC_000962.2|_2386067_2382489		methionine synthase (B12-dependent) (EC 2.1.1.13)	2.1.1.13	CDS	methionine synthase	2.1.1.13	metH	
+	2381071	2382492	1422	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2381071_2382492		PPE-repeat proteins		CDS	PPE family protein			
+	2386293	2387171	879	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2386293_2387171		Archaeal enzymes of ATP-grasp superfamily		CDS	conserved hypothetical protein			
-	2387202	2387972	771	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_2387972_2387202		hypothetical protein		CDS	hypothetical protein			
-	2387969	2388235	267	FIG113212: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2388235_2387969		PE family.		CDS	PE family protein			
+	2388616	2390085	1470	L-asparagine permease	peg	gi|57116681|ref|NC_000962.2|_2388616_2390085		asparagine:proton symporter, AAT family (TC 2.A.3.1.8)		CDS	amino acid permease family protein			
+	2390085	2390288	204	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2390085_2390288		hypothetical protein		CDS	putative membrane protein			
-	2390308	2391189	882	"Oxidoreductase, short-chain dehydrogenase/reductase family"	peg	gi|57116681|ref|NC_000962.2|_2391189_2390308		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
-	2391215	2392459	1245	L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC	peg	gi|57116681|ref|NC_000962.2|_2392459_2391215		cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	6.3.1.13	CDS	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	6.3.1.13	mshC	
-	2392517	2393320	804	Protein cysQ homolog	peg	gi|57116681|ref|NC_000962.2|_2393320_2392517		3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)	3.1.3.7	CDS	3'-phosphoadenosine 5'-phosphate phosphatase	3.1.3.25	cysQ	
-	2393638	2393796	159				hypothetical protein		CDS				
+	2393396	2393641	246	"DNA-binding protein, CopG family"	peg	gi|57116681|ref|NC_000962.2|_2393411_2393641		Ribbon-helix-helix protein, copG family.		CDS	ribbon-helix-helix , copG family protein			
-	2393851	2394687	837	Phosphatidylinositol 3-and 4-kinase family protein	peg	gi|57116681|ref|NC_000962.2|_2394687_2393851		conserved hypothetical protein		CDS	phosphatidylinositol 3- and 4-kinase family protein			
-	2394650	2395237	588	FIG00820819: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2395237_2394650		conserved hypothetical protein		CDS	conserved hypothetical family protein			
-	2395301	2396011	711	Phosphoglycerate mutase family	peg	gi|57116681|ref|NC_000962.2|_2396011_2395301		probable phosphomutase, MSMEG_4193 family		CDS	putative phosphomutase, MSMEG_4193 family protein			
-	2396008	2396856	849	Undecaprenyl-diphosphatase (EC 3.6.1.27)	peg	gi|57116681|ref|NC_000962.2|_2396856_2396008		Undecaprenyl-diphosphatase (EC 3.6.1.27)	3.6.1.27	CDS	undecaprenyl-diphosphatase UppP	3.6.1.27	uppP	
-	2396902	2397210	309	FIG00821698: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2397210_2396902		hypothetical protein		CDS	conserved hypothetical protein			
+	2397330	2398406	1077	Lipoprotein LppL	peg	gi|57116681|ref|NC_000962.2|_2397381_2398406		hypothetical protein		CDS	NHL repeat family protein			
+	2398403	2398684	282	FIG00821060: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2398436_2398684		hypothetical protein		CDS	conserved hypothetical protein			
+	2398675	2399793	1119	Dihydroorotate dehydrogenase (EC 1.3.3.1)	peg	gi|57116681|ref|NC_000962.2|_2398720_2399793		dihydroorotate oxidase A (EC 1.3.3.1)	1.3.98.1	CDS	dihydroorotate dehydrogenase	1.3.98.1	pyrD	
-	2399798	2400328	531	Phospholipid-binding protein	peg	gi|57116681|ref|NC_000962.2|_2400328_2399798		Raf kinase inhibitor-like protein, YbhB/YbcL family		CDS	phosphatidylethanolamine-binding family protein			
-	2400376	2401722	1347	FIG016551: Putative peptidase	peg	gi|57116681|ref|NC_000962.2|_2401722_2400376		Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases		CDS	peptidase M20/M25/M40 family protein			
-	2402193	2402510	318	FIG00823288: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2402510_2402193		Plasmid stabilisation system protein.		CDS	toxin ParE2		parE2	
-	2402507	2402722	216	FIG00823257: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2402722_2402507		putative addiction module component, TIGR02574 family		CDS	conserved hypothetical protein			
+	2402977	2404035	1059	Phosphoribosyl transferase domain protein	peg	gi|57116681|ref|NC_000962.2|_2403337_2404035		Predicted phosphoribosyltransferases		CDS	phosphoribosyl transferase domain protein			
-	2404165	2404521	357	Probable transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_2404521_2404165		hypothetical protein		CDS	conserved hypothetical protein			
-	2404616	2405398	783	"FIG055075: Possibly a cell division protein, antigen 84 in Mycobacteria"	peg	gi|57116681|ref|NC_000962.2|_2405368_2404616		DivIVA domain		CDS	divIVA domain protein			
-	2405666	2405956	291	FIG021764: Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2405956_2405666		Predicted integral membrane protein		CDS	YGGT family protein			
-	2406118	2406774	657	FIG021292: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2406774_2406118		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2406840	2407634	795	"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC"	peg	gi|57116681|ref|NC_000962.2|_2407616_2406840		pyridoxal phosphate enzyme, YggS family		CDS	alanine racemase, N-terminal domain protein			
-	2407622	2408425	804	COG1496: Uncharacterized conserved protein	peg	gi|57116681|ref|NC_000962.2|_2408329_2407622		uncharacterized protein, YfiH family		CDS	multi-copper polyphenol oxidoreductase laccase family protein			
-	2408385	2409524	1140	Cell division protein FtsZ (EC 3.4.24.-)	peg	gi|57116681|ref|NC_000962.2|_2409524_2408385		cell division protein FtsZ		CDS	cell division protein FtsZ		ftsZ	
-	2409697	2410641	945	Cell division protein FtsQ	peg	gi|57116681|ref|NC_000962.2|_2410605_2409697		Cell division septal protein		CDS	cell division FtsQ family protein			
-	2410638	2412122	1485	UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	peg	gi|57116681|ref|NC_000962.2|_2412122_2410638		UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)	6.3.2.8	CDS	UDP-N-acetylmuramate--alanine ligase	6.3.2.8	murC	
-	2412119	2413351	1233	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	peg	gi|57116681|ref|NC_000962.2|_2413351_2412119		UDP-N-acetylglucosamine-N-acetylmuramylpentapeptide N-acetylglucosamine transferase	2.4.1.227	CDS	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	2.4.1.227	murG	
-	2413348	2414922	1575	Cell division protein FtsW	peg	gi|57116681|ref|NC_000962.2|_2414922_2413348		cell division-specific peptidoglycan biosynthesis regulator FtsW		CDS	cell division protein FtsW		ftsW	
-	2414934	2416403	1470	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	peg	gi|57116681|ref|NC_000962.2|_2416364_2414934		UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	6.3.2.9	CDS	UDP-N-acetylmuramoylalanine--D-glutamate ligase	6.3.2.9	murD	
-	2416396	2417475	1080	Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	peg	gi|57116681|ref|NC_000962.2|_2417475_2416396		Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	2.7.8.13	CDS	phospho-N-acetylmuramoyl-pentapeptide-transferase	2.7.8.13	mraY	
-	2417472	2419004	1533	"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)"	peg	gi|57116681|ref|NC_000962.2|_2419004_2417472		UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)	6.3.2.10	CDS	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein	6.3.2.10	murF	
-	2419001	2420554	1554	"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)"	peg	gi|57116681|ref|NC_000962.2|_2420554_2419001		UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	6.3.2.13	CDS	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	6.3.2.13	murE	
-	2420631	2421665	1035	FIG038012: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2421665_2420631		alkylhydroperoxidase AhpD family core domain		CDS	alkylhydroperoxidase AhpD family core domain protein			
-	2421662	2422003	342	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_2422003_2421662		hypothetical protein		CDS	conserved hypothetical protein			
-	2422271	2423137	867	Probable F420-dependent oxidoreductase family protein	peg	gi|57116681|ref|NC_000962.2|_2423137_2422271		probable F420-dependent oxidoreductase, Rv2161c family		CDS	putative F420-dependent oxidoreductase, Rv2161c family domain protein			
-	2423240	2424838	1599	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_2424838_2423240		PE family.		CDS	PE family protein			
-	2425048	2426868	1821	Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	peg	gi|57116681|ref|NC_000962.2|_2426868_2425048		Cell division protein FtsI/penicillin-binding protein 2	2.4.1.129	CDS	penicillin binding transpeptidase domain protein			
-	2427084	2428238	1155	FIG034299: proline rich membrane protein	peg	gi|57116681|ref|NC_000962.2|_2428076_2427084		hypothetical protein		CDS	putative conserved proline rich membrane protein			
-	2428235	2429269	1035	rRNA small subunit methyltransferase H	peg	gi|57116681|ref|NC_000962.2|_2429269_2428235		S-adenosyl-methyltransferase MraW	2.1.1.199	CDS	S-adenosyl-methyltransferase MraW	2.1.1.-	mraW	
-	2429427	2429858	432	Cell division protein MraZ	peg	gi|57116681|ref|NC_000962.2|_2429858_2429427		mraZ protein		CDS	protein MraZ		mraZ	
-	2430159	2431043	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2431043_2430159		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	2431094	2431420	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2431420_2431094		Transposase and inactivated derivatives		CDS	transposase family protein			
-	2431565	2431969	405	FIG017342: transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_2431969_2431565		Protein of unknown function (DUF3040).		CDS	conserved hypothetical protein			
+	2432235	2432855	621	Acetyltransferase (EC 2.3.1.-)	peg	gi|57116681|ref|NC_000962.2|_2432235_2432855		Acetyltransferases		CDS	acetyltransferase family protein			
-	2433631	2434536	906	FIG00821173: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2434536_2433631		hypothetical protein		CDS	conserved hypothetical protein			
+	2432951	2433634	684	Lipoprotein LppM	peg	gi|57116681|ref|NC_000962.2|_2432951_2433634		Protein of unknown function (DUF3153).		CDS	conserved hypothetical protein			
+	2434847	2435905	1059	Geranylgeranyl diphosphate synthase (EC 2.5.1.29)	peg	gi|57116681|ref|NC_000962.2|_2434847_2435905		Geranylgeranyl pyrophosphate synthase	2.5.1.29, 2.5.1.1, 2.5.1.10	CDS	geranylgeranyl pyrophosphate synthase	2.5.1.1		
-	2437446	2437886	441	Conserved hypothetical regulatory protein	peg	gi|57116681|ref|NC_000962.2|_2437850_2437446		hypothetical protein		CDS	putative regulatory protein			
+	2435909	2437459	1551	Carotene biosynthesis associated membrane protein	peg	gi|57116681|ref|NC_000962.2|_2435909_2437459		carotene biosynthesis associated membrane protein	2.4.1.-	CDS	putative membrane protein			
+	2437941	2439140	1200	Probable serine/threonine-protein kinase pknL (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_2437941_2439140		serine/threonine protein kinase	2.7.11.1	CDS	phosphotransferase enzyme family protein			
-	2439282	2439947	666	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2439881_2439282		Transposase and inactivated derivatives		CDS	transposase IS116/IS110/IS902 family protein			
-	2439881	2440063	183	FIG00825588: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2440063_2439881					putative predicted protein			
-	2440332	2441720	1389	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54)	peg	gi|57116681|ref|NC_000962.2|_2441720_2440332		3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54	CDS	3-deoxy-7-phosphoheptulonate synthase	2.5.1.54		
-	2441811	2442317	507	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2442317_2441811		hypothetical protein		CDS	conserved hypothetical protein			
-	2442327	2443265	939	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2443265_2442327		hypothetical protein		CDS	putative membrane protein			
+	2443302	2444585	1284	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2443350_2444585		Protein of unknown function (DUF2029).	2.4.1.-	CDS	polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol mannoside mannosyltransferase	2.4.1.-		
-	2444586	2445329	744	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	peg	gi|57116681|ref|NC_000962.2|_2445329_2444586		1-acyl-sn-glycerol-3-phosphate acyltransferase	2.3.1.51	CDS	acyltransferase family protein			
-	2445415	2445810	396	FIG00821592: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2445810_2445415		hypothetical protein		CDS	conserved hypothetical protein			
-	2445807	2446949	1143	Arsenical pump-driving ATPase (EC 3.6.3.16)	peg	gi|57116681|ref|NC_000962.2|_2446949_2445807		arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1)	3.6.3.16	CDS	anion-transporting ATPase family protein			
-	2447066	2447500	435	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2447500_2447066		Oligoketide cyclase/lipid transport protein		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
-	2447605	2447994	390	FIG00995034: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2447994_2447605		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	2448151	2449962	1812	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_2448151_2449962		Long-chain acyl-CoA synthetases (AMP-forming)	6.2.1.3	CDS	long-chain-fatty-acid--CoA ligase FadD15	6.2.1.3	fadD15	
-	2449993	2451192	1200	Poly(glycerol-phosphate) alpha-glucosyltransferase (EC 2.4.1.52)	peg	gi|57116681|ref|NC_000962.2|_2451192_2449993		Glycosyltransferase	2.4.1.-	CDS	GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase	2.4.1.57	pimB	
-	2451247	2452080	834	FIG00821136: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2452080_2451247		Peptidase MA superfamily.		CDS	peptidase MA superfamily protein			
-	2452115	2453296	1182	Probable endopeptidase	peg	gi|57116681|ref|NC_000962.2|_2453233_2452115		Cell wall-associated hydrolases (invasion-associated proteins)		CDS	conserved hypothetical protein			
-	2453458	2453736	279	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2453598_2453458		hypothetical protein		CDS	conserved hypothetical protein			
-	2455631	2456674	1044	Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	peg	gi|57116681|ref|NC_000962.2|_2456674_2455631		anthranilate phosphoribosyltransferase (EC 2.4.2.18)	2.4.2.18	CDS				
+	2453813	2455756	1944				exonuclease, DNA polymerase III, epsilon subunit family	2.7.7.7	CDS	exonuclease, DNA polymerase III, epsilon subunit family domain protein	2.7.7.7		
+	2456970	2457512	543	Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	peg	gi|57116681|ref|NC_000962.2|_2456970_2457512		Heme/copper-type cytochrome/quinol oxidase, subunit 3	1.9.3.1	CDS	cytochrome c oxidase subunit 3	1.9.3.1	ctaE	
+	2457553	2458395	843	"ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit"	peg	gi|57116681|ref|NC_000962.2|_2457625_2458395		menaquinol-cytochrome c reductase cytochrome c1 subunit precursor		CDS	menaquinol-cytochrome c reductase cytochrome c subunit		qcrC	
+	2458392	2459681	1290	Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)	peg	gi|57116681|ref|NC_000962.2|_2458470_2459681		menaquinol-cytochrome c reductase iron-sulfur subunit precursor		CDS	rieske [2Fe-2S] domain protein			
+	2459678	2461327	1650	"Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)"	peg	gi|57116681|ref|NC_000962.2|_2459678_2461327		menaquinol-cytochrome c reductase cytochrome b subunit precursor		CDS	cytochrome b(N-terminal)/b6/petB family protein			
-	2461504	2462148	645	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2462148_2461504		Protein of unknown function (DUF2561).		CDS	conserved hypothetical protein			
-	2462148	2463047	900	Putative membrane protein MmpS3	peg	gi|57116681|ref|NC_000962.2|_2463047_2462148		Mycobacterium membrane protein.		CDS	mycobacterium membrane family protein			
-	2463233	2463652	420	Probable cytochrome c oxidase polypeptide 4 (EC 1.9.3.1)	peg	gi|57116681|ref|NC_000962.2|_2463652_2463233		Cytochrome c oxidase subunit IV.		CDS	cytochrome c oxidase polypeptide 4	1.9.3.1	ctaF	
-	2463660	2464646	987	Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	peg	gi|57116681|ref|NC_000962.2|_2464646_2463660		Heme/copper-type cytochrome/quinol oxidases, subunit 2	1.9.3.1	CDS	cytochrome c oxidase subunit 2	1.9.3.1	ctaC	
+	2464997	2466955	1959	Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	peg	gi|57116681|ref|NC_000962.2|_2464997_2466955		asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4)	6.3.5.4	CDS	asparagine synthase	6.3.5.4	asnB	
-	2467053	2468027	975	Adenosine kinase (EC 2.7.1.20)	peg	gi|57116681|ref|NC_000962.2|_2468027_2467053		Sugar kinases, ribokinase family	2.7.1.20	CDS	pfkB carbohydrate kinase family protein			
+	2468231	2468923	693	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2468231_2468923		hypothetical protein		CDS	conserved hypothetical protein			
-	2468931	2469287	357	probable iron binding protein from the HesB_IscA_SufA family	peg	gi|57116681|ref|NC_000962.2|_2469287_2468931		Iron-sulfur cluster assembly accessory protein		CDS	protein Rv2204c/MT2260			
-	2469387	2470532	1146	Glycerate kinase (EC 2.7.1.31)	peg	gi|57116681|ref|NC_000962.2|_2470463_2469387		Glycerate kinase	2.7.1.31	CDS	glycerate kinase family protein	2.7.1.31		
+	2470838	2471332	495	"CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase"	peg	gi|57116681|ref|NC_000962.2|_2470958_2471332		Protein of unknown function (DUF3043).		CDS	conserved hypothetical protein			
+	2471411	2472496	1086	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	peg	gi|57116681|ref|NC_000962.2|_2471411_2472496		nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	2.4.2.21	CDS	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	2.4.2.21	cobT	
+	2472493	2473242	750	Cobalamin synthase	peg	gi|57116681|ref|NC_000962.2|_2472493_2473242		cobalamin-5'-phosphate synthase (EC 2.7.8.26)	2.7.8.26	CDS	cobalamin-5-phosphate synthase family protein			
+	2473330	2474700	1371	FIG00821894: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2473330_2474700					conserved hypothetical protein			
-	2474864	2475970	1107	Branched-chain amino acid aminotransferase (EC 2.6.1.42)	peg	gi|57116681|ref|NC_000962.2|_2475970_2474864		branched-chain amino acid aminotransferase, group II	2.6.1.42	CDS	branched-chain amino acid aminotransferase	2.6.1.42	ilvE	
+	2473400	2474938	1539				hypothetical protein		CDS				
-	2476042	2477145	1104	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	peg	gi|57116681|ref|NC_000962.2|_2477145_2476042		aminomethyltransferase (EC 2.1.2.10)	2.1.2.10	CDS	glycine cleavage system T protein	2.1.2.10	gcvT	
+	2477160	2478326	1167	Adenylate cyclase (EC 4.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_2477202_2478326		Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	adenylate and Guanylate cyclase catalytic domain protein			
+	2478338	2479885	1548	Cytosol aminopeptidase PepA (EC 3.4.11.1)	peg	gi|57116681|ref|NC_000962.2|_2478338_2479885		Leucyl aminopeptidase	3.4.11.1	CDS	cytosol aminopeptidase family, catalytic domain protein			
-	2479923	2481701	1779	"Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)"	peg	gi|57116681|ref|NC_000962.2|_2481701_2479923		Short-chain dehydrogenases of various substrate specificities		CDS	short chain dehydrogenase family protein			
+	2481965	2483626	1662	Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	peg	gi|57116681|ref|NC_000962.2|_2481983_2483626		2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61)	2.3.1.61	CDS	dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex	2.3.1.61	sucB	
+	2483626	2484531	906	Cell division inhibitor	peg	gi|57116681|ref|NC_000962.2|_2483626_2484531		TIGR01777 family protein		CDS	NAD dependent epimerase/dehydratase family protein			
+	2484584	2485276	693	Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase	peg	gi|57116681|ref|NC_000962.2|_2484584_2485276		lipoate-protein ligase B	2.3.1.181	CDS	lipoyl(octanoyl) transferase	2.3.1.181	lipB	
+	2485273	2486208	936	Lipoate synthase	peg	gi|57116681|ref|NC_000962.2|_2485315_2486208		lipoate synthase	2.8.1.8	CDS	lipoyl synthase	2.8.1.8	lipA	
+	2486235	2486987	753	"Transmembrane protein MT2276, clustered with lipoate gene"	peg	gi|57116681|ref|NC_000962.2|_2486235_2486987		Domain of unknown function (DUF4191).		CDS	conserved hypothetical protein			
-	2486994	2487416	423	PROBABLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_2487416_2486994		RDD family.		CDS	RDD family protein			
+	2487615	2489051	1437	Glutamine synthetase type I (EC 6.3.1.2)	peg	gi|57116681|ref|NC_000962.2|_2487615_2489051		L-glutamine synthetase (EC 6.3.1.2)	6.3.1.2	CDS	glutamine synthetase, type I	6.3.1.2	glnA	
-	2489369	2492353	2985	Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)	peg	gi|57116681|ref|NC_000962.2|_2492353_2489369		Glutamine synthetase adenylyltransferase	2.7.7.42	CDS	glnD PII-uridylyltransferase family protein			
-	2492402	2493742	1341	Glutamine synthetase type I (EC 6.3.1.2)	peg	gi|57116681|ref|NC_000962.2|_2493742_2492402		L-glutamine synthetase (EC 6.3.1.2)	6.3.1.2	CDS	glutamine synthetase, type I	6.3.1.2	glnA	
-	2493837	2495399	1563	Putative hydrolase	peg	gi|57116681|ref|NC_000962.2|_2495399_2493837		tripeptidyl-peptidase B. Serine peptidase. MEROPS family S33		CDS	alpha/beta hydrolase fold family protein			
-	2495461	2497023	1563	Probable exported protease [EC:3.4.-.-]	peg	gi|57116681|ref|NC_000962.2|_2497023_2495461		tripeptidyl-peptidase B. Serine peptidase. MEROPS family S33		CDS	alpha/beta hydrolase fold family protein			
-	2497225	2497416	192	FIG00826184: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2497416_2497225					wax ester synthase-like Acyl-CoA acyltransferase domain protein			
+	2497742	2498587	846	3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	peg	gi|57116681|ref|NC_000962.2|_2497853_2498587		ketopantoate hydroxymethyltransferase (EC 2.1.2.11)	2.1.2.11	CDS	3-methyl-2-oxobutanoate hydroxymethyltransferase	2.1.2.11	panB	
+	2498832	2500373	1542	Chaperonin GroEL (HSP60 family)	peg	gi|57116681|ref|NC_000962.2|_2498889_2500373		Uncharacterized conserved protein		CDS	CYTH domain protein			
-	2500386	2500814	429										
+	2500923	2501150	228	hypothetical protein Rv2227	peg	gi|57116681|ref|NC_000962.2|_2500923_2501150		hypothetical protein		CDS	conserved hypothetical protein			
+	2501147	2501632	486	hypothetical protein Rv2227	peg	gi|57116681|ref|NC_000962.2|_2501147_2501632		Uncharacterized protein conserved in bacteria (DUF2086).		CDS	2OG-Fe(II) oxygenase superfamily protein			
-	2501644	2502738	1095	FIG006762: Phosphoglycerate mutase family	peg	gi|57116681|ref|NC_000962.2|_2502738_2501644		Fructose-2,6-bisphosphatase	5.4.2.1	CDS	conserved hypothetical protein			
-	2502735	2503472	738	FIG137478: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2503472_2502735		Zn-ribbon protein, possibly nucleic acid-binding		CDS	putative zinc ribbon domain protein			
-	2503469	2504608	1140	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2504608_2503469		dinuclear metal center protein, YbgI/SA1388 family		CDS	NIF3 family protein			
-	2504605	2505699	1095	L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	peg	gi|57116681|ref|NC_000962.2|_2505699_2504605		Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	2.6.1.9	CDS	aminotransferase class I and II family protein			
-	2505714	2505869	156	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2505869_2505714					conserved hypothetical protein			
-	2506207	2506383	177	FIG00824339: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2506383_2506207					putative antitoxin VapB16			
+	2506395	2507153	759	Phosphoglycolate phosphatase (EC 3.1.3.18)	peg	gi|57116681|ref|NC_000962.2|_2506395_2507153		Predicted phosphatases		CDS	HAD hydrolase, IA, variant 1 family protein			
+	2507146	2507637	492	Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)	peg	gi|57116681|ref|NC_000962.2|_2507203_2507637		Protein-tyrosine-phosphatase	3.1.3.48	CDS	putative low molecular weight protein-tyrosine-phosphatase			
-	2508434	2509393	960	Adenosylcobinamide-phosphate synthase	peg	gi|57116681|ref|NC_000962.2|_2509393_2508434		adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	6.3.1.10	CDS	cobalamin biosynthesis protein CobD	6.3.1.10	cobD	
+	2507637	2508452	816	"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion"	peg	gi|57116681|ref|NC_000962.2|_2507637_2508452		Uncharacterized conserved protein		CDS	SURF1 family protein			
+	2509441	2510256	816	hypothetical protein Rv2237	peg	gi|57116681|ref|NC_000962.2|_2509441_2510256		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2510715	2511176	462	Alkyl hydroperoxide reductase subunit C-like protein	peg	gi|57116681|ref|NC_000962.2|_2511176_2510715		Peroxiredoxin	1.11.1.15	CDS	putative peroxiredoxin Rv2238c/MT2298			
-	2511176	2511598	423	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2511598_2511176		Protein of unknown function (DUF3052).		CDS	conserved hypothetical protein			
-	2511690	2512280	591	FIG00820323: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2512145_2511690		hypothetical protein		CDS	conserved hypothetical protein			
+	2512452	2515244	2793	Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	peg	gi|57116681|ref|NC_000962.2|_2512452_2515244		pyruvate dehydrogenase E1 component, homodimeric type	1.2.4.1	CDS	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	1.2.4.1	aceE	
+	2515304	2516548	1245	Regulator of polyketide synthase expression	peg	gi|57116681|ref|NC_000962.2|_2515367_2516548		Regulator of polyketide synthase expression		CDS	pucR C-terminal helix-turn-helix domain protein			
+	2516787	2517695	909	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	peg	gi|57116681|ref|NC_000962.2|_2516787_2517695		(acyl-carrier-protein) S-malonyltransferase	2.3.1.39	CDS	malonyl CoA-acyl carrier protein transacylase	2.3.1.39	fabD	
+	2517771	2518118	348	Acyl carrier protein	peg	gi|57116681|ref|NC_000962.2|_2517771_2518118		Acyl carrier protein		CDS	meromycolate extension acyl carrier protein		acpM	
+	2518115	2519365	1251	"3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)"	peg	gi|57116681|ref|NC_000962.2|_2518157_2519365		3-oxoacyl-[acyl-carrier-protein] synthase II (EC 2.3.1.41)	2.3.1.-	CDS	3-oxoacyl-[acyl-carrier-protein] synthase 1	2.3.1.41	kasA	
+	2519396	2520712	1317	"3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)"	peg	gi|57116681|ref|NC_000962.2|_2519435_2520712		3-oxoacyl-(acyl-carrier-protein) synthase	2.3.1.-	CDS	3-oxoacyl-[acyl-carrier-protein] synthase 2	2.3.1.41	kasB	
+	2520743	2522164	1422	Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	peg	gi|57116681|ref|NC_000962.2|_2520743_2522164		Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)		CDS	carboxyl transferase domain protein			
+	2522288	2523175	888	FIG00821976: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2522288_2523175		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2523241	2524791	1551	Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	peg	gi|57116681|ref|NC_000962.2|_2524791_2523241		Glycerol-3-phosphate dehydrogenase	1.1.5.3	CDS	FAD binding domain protein			
-	2524785	2525354	570	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_2525273_2524785		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	2525402	2525821	420	Flavoprotein	peg	gi|57116681|ref|NC_000962.2|_2525402_2525821		hypothetical protein	2.5.1.26	CDS	putative flavoprotein			
+	2525778	2526992	1215	Flavoprotein	peg	gi|57116681|ref|NC_000962.2|_2525778_2526992		FAD/FMN-containing dehydrogenases	2.5.1.26	CDS	FAD linked oxidase, C-terminal domain protein			
+	2526989	2527918	930	Diacylglycerol kinase-related protein	peg	gi|57116681|ref|NC_000962.2|_2526989_2527918		diacylglycerol kinase (EC 2.7.1.107)		CDS	diacylglycerol kinase	2.7.1.107	dagK	
+	2527984	2528487	504	FIG00820044: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2527984_2528487		hypothetical protein		CDS	putative secreted protein			
-	2528520	2528975	456	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2528975_2528520		LysE type translocator.		CDS	lysE type translocator family protein			
+	2529094	2529312	219	FIG039524: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2529094_2529312		Transcriptional regulators		CDS	asnC family protein			
-	2529341	2529874	534	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2529874_2529341		Protein of unknown function (DUF3145).		CDS	conserved hypothetical protein			
-	2530004	2530822	819	Beta-lactamase class C and other penicillin binding proteins	peg	gi|57116681|ref|NC_000962.2|_2530822_2530004		Beta-lactamase class C and other penicillin binding proteins		CDS	conserved hypothetical protein			
-	2530836	2531897	1062	Possible transcriptional regulatory protein	peg	gi|57116681|ref|NC_000962.2|_2531897_2530836		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
+	2532245	2533330	1086	"Formaldehyde dehydrogenase MscR, NAD/mycothiol-dependent (EC 1.2.1.66) / S-nitrosomycothiol reductase MscR"	peg	gi|57116681|ref|NC_000962.2|_2532245_2533330		mycothiol-dependent formaldehyde dehydrogenase	1.1.1.306	CDS	S-(hydroxymethyl)mycothiol dehydrogenase	1.1.1.306		
+	2533327	2533965	639	Putative hydrolase in cluster with formaldehyde/S-nitrosomycothiol reductase MscR	peg	gi|57116681|ref|NC_000962.2|_2533327_2533965		Zn-dependent hydrolases, including glyoxylases		CDS	metallo-beta-lactamase superfamily protein			
-	2534042	2534473	432	Apolipoprotein N-acyltransferase (EC 2.3.1.-)	peg	gi|57116681|ref|NC_000962.2|_2534473_2534042		hypothetical protein		CDS	conserved hypothetical protein			
-	2534470	2535564	1095	Apolipoprotein N-acyltransferase (EC 2.3.1.-)	peg	gi|57116681|ref|NC_000962.2|_2535564_2534470		apolipoprotein N-acyltransferase	2.3.1.-	CDS	apolipoprotein N-acyltransferase	2.3.1.-	lnt	
-	2536572	2538350	1779	Possible molecular chaperone DnaK	peg	gi|57116681|ref|NC_000962.2|_2538320_2536572		Molecular chaperone		CDS	hsp70 family protein			
+	2535641	2536594	954	"Oxidoreductase, short-chain dehydrogenase/reductase family"	peg	gi|57116681|ref|NC_000962.2|_2535641_2536594		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
+	2538700	2539929	1230	FIG00820050: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2538724_2539929		Major Facilitator Superfamily.		CDS	major Facilitator Superfamily protein			
+	2540104	2541390	1287	putative cytochrome P450 hydroxylase	peg	gi|57116681|ref|NC_000962.2|_2540104_2541390		Cytochrome P450		CDS	putative cytochrome P450 124			
-	2541644	2542810	1167	FIG00821541: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2542723_2541644		Predicted RNA-binding protein homologous to eukaryotic snRNP		CDS	sulfotransferase domain protein			
-	2542807	2544276	1470	Cytochrome P450 128	peg	gi|57116681|ref|NC_000962.2|_2543988_2542807		Cytochrome P450		CDS	cytochrome P450 family protein			
+	2544698	2545225	528	Lipoprotein LppN	peg	gi|57116681|ref|NC_000962.2|_2544698_2545225		hypothetical protein		CDS	putative lipoprotein lppN			
+	2545332	2545631	300	FIG00822175: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2545332_2545631		Protein of unknown function (DUF2695).		CDS	conserved hypothetical protein			
+	2545737	2546105	369	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2545737_2546105		Predicted membrane protein		CDS	conserved hypothetical protein			
+	2546102	2546431	330	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2546102_2546431		Domain of unknown function (DUF202).		CDS	conserved hypothetical protein			
-	2546488	2546679	192	FIG00832386: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2546679_2546488					putative toxin MazF8			
+	2546883	2547752	870	FIG032699: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2546883_2547752		hypothetical protein		CDS	conserved hypothetical protein			
+	2547749	2548939	1191	Cytochrome P450 121	peg	gi|57116681|ref|NC_000962.2|_2547749_2548939		Cytochrome P450		CDS	cytochrome P450 121	1.14.-.-	cyp121	
-	2549124	2550029	906	Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	peg	gi|57116681|ref|NC_000962.2|_2550011_2549124		Glycerophosphoryl diester phosphodiesterase		CDS	glycerophosphoryl diester phosphodiesterase family protein			
+	2550065	2550391	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2550065_2550391		Transposase and inactivated derivatives		CDS	transposase family protein			
+	2550442	2551326	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2550442_2551326		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	2551560	2552939	1380	Probable dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_2551560_2552939		FAD/FMN-containing dehydrogenases		CDS	conserved hypothetical protein			
+	2553173	2554831	1659	Probable low-affinity inorganic phosphate transporter	peg	gi|57116681|ref|NC_000962.2|_2553212_2554831		Phosphate/sulphate permeases		CDS	phosphate transporter family protein			
-	2554938	2555876	939	Cys regulon transcriptional activator CysB	peg	gi|57116681|ref|NC_000962.2|_2555876_2554938		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
-	2555925	2556146	222	FIG00824482: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2556146_2555925					conserved hypothetical protein			
+	2555941	2556135	195				hypothetical protein		CDS				
+	2556145	2557440	1296	Membrane-bound esterase LipM	peg	gi|57116681|ref|NC_000962.2|_2556145_2557440		Esterase/lipase		CDS	alpha/beta hydrolase fold family protein			
+	2557473	2558810	1338	Diacyglycerol O-acyltransferase (EC 2.3.1.20)	peg	gi|57116681|ref|NC_000962.2|_2557473_2558810		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		
-	2558877	2559629	753	FIG00820384: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2559629_2558877		Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis		CDS	DSBA-like thioredoxin domain protein			
-	2559634	2559804	171	FIG00822662: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2559804_2559634								
+	2559739	2561331	1593	Na+/H+ antiporter	peg	gi|57116681|ref|NC_000962.2|_2559826_2561331		sodium/proton antiporter, CPA1 family (TC 2.A.36)		CDS	na+/H+ antiporter			
+	2561609	2562457	849	CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)	peg	gi|57116681|ref|NC_000962.2|_2561723_2562457		CDP-diacylglycerol pyrophosphatase	3.6.1.26	CDS	CDP-diacylglycerol pyrophosphatase family protein			
+	2562881	2563114	234	Probable conserved lipoprotein lppO	peg	gi|57116681|ref|NC_000962.2|_2562965_2563114		hypothetical protein		CDS	putative lipoprotein lppO			
+	2563174	2564028	855	"Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)"	peg	gi|57116681|ref|NC_000962.2|_2563174_2564028		Rhodanese-related sulfurtransferase	2.8.1.1, 2.8.1.2	CDS	rhodanese-like domain protein			
-	2564029	2564253	225	FIG00821330: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2564253_2564029		Nucleoside phosphorylase		CDS	phosphorylase superfamily protein			
-	2564292	2565032	741	FIG00821330: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2565002_2564292		Nucleoside phosphorylase		CDS	phosphorylase superfamily protein			
+	2565327	2566550	1224	Putative cystathionine beta-lyase (EC 4.4.1.8)	peg	gi|57116681|ref|NC_000962.2|_2565387_2566550		Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	4.4.1.8	CDS	aminotransferase class I and II family protein			
+	2566772	2567410	639	Colicin E2 tolerance protein CbrC-like protein	peg	gi|57116681|ref|NC_000962.2|_2566847_2567410		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	2567477	2568406	930	Haloalkane dehalogenase (EC 3.8.1.5)	peg	gi|57116681|ref|NC_000962.2|_2567477_2568406		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.8.1.5	CDS	haloalkane dehalogenase	3.8.1.5	dhmA	
+	2568438	2568890	453	FIG00821774: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2568438_2568890		hypothetical protein		CDS	conserved hypothetical protein			
+	2568986	2570053	1068	Aldo/keto reductase	peg	gi|57116681|ref|NC_000962.2|_2568986_2570053		Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	aldo/keto reductase family protein			
-	2570059	2572002	1944	Chaperone protein HtpG	peg	gi|57116681|ref|NC_000962.2|_2572002_2570059		Molecular chaperone, HSP90 family		CDS	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			
-	2572076	2572894	819	FIG00823255: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2572858_2572076		Zn-dependent hydrolases, including glyoxylases		CDS	metallo-beta-lactamase superfamily protein			
+	2573048	2573707	660	Cutinase Cut2 (EC 3.1.1.74)	peg	gi|57116681|ref|NC_000962.2|_2573048_2573707		Cutinase.	3.1.1.74	CDS	cutinase family protein			
+	2573813	2574055	243	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2573843_2574055		Domain of unknown function (DUF1918).		CDS	conserved hypothetical protein			
-	2574096	2575019	924	PROBABLE ANTIBIOTIC-RESISTANCE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_2575019_2574096		Predicted metal-dependent hydrolase of the TIM-barrel fold		CDS	amidohydrolase family protein			
-	2575016	2575225	210	FIG00820486: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2575225_2575016		hypothetical protein		CDS	conserved hypothetical protein			
-	2575314	2575523	210	Flagelliform silk protein (Fragment)	peg	gi|57116681|ref|NC_000962.2|_2575523_2575314								
+	2575809	2577098	1290	FIG00821564: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2575809_2577098		Uncharacterized protein containing a NRPS condensation (elongation) domain		CDS	condensation domain protein			
-	2577194	2577820	627	FIG00821865: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2577820_2577194		hypothetical protein		CDS	conserved hypothetical protein			
-	2577851	2578696	846	Hydrolases of the alpha/beta superfamily	peg	gi|57116681|ref|NC_000962.2|_2578672_2577851		Hydrolases of the alpha/beta superfamily		CDS	dienelactone hydrolase family protein			
+	2577497	2577922	426				Uncharacterized conserved protein		CDS				
-	2579854	2580012	159				hypothetical protein		CDS				
+	2580419	2581135	717	FIG00821864: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2580419_2581135		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	2581145	2581477	333	FIG00820166: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2581145_2581477		hypothetical protein		CDS	conserved hypothetical protein			
-	2581843	2582298	456	Integrase	peg	gi|57116681|ref|NC_000962.2|_2582298_2581843		Site-specific recombinase XerD		CDS	phage integrase family protein			
-	2582477	2582644	168	FIG00822831: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2582644_2582477		hypothetical protein		CDS	hypothetical protein			
+	2583277	2583429	153	FIG00820785: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2583277_2583429		hypothetical protein		CDS	hypothetical protein			
+	2583435	2583779	345	"DNA binding domain, excisionase family"	peg	gi|57116681|ref|NC_000962.2|_2583435_2583779		DNA binding domain, excisionase family		CDS	DNA binding , excisionase family domain protein			
+	2583812	2584408	597	Putative ATP-dependent exoDNAse	peg	gi|57116681|ref|NC_000962.2|_2583812_2584408		hypothetical protein		CDS	putative exonuclease V subunit alpha			
+	2584486	2584755	270	FIG00821808: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2584486_2584755		hypothetical protein		CDS	conserved hypothetical protein			
-	2585052	2585906	855	FIG00821236: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2585906_2585052		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	2585917	2587290	1374	"TldE/PmbA family protein, Actinobacterial subgroup"	peg	gi|57116681|ref|NC_000962.2|_2587290_2585917		Predicted Zn-dependent proteases and their inactivated homologs		CDS	modulator of DNA gyrase family protein			
-	2587287	2588804	1518	"TldD family protein, Actinobacterial subgroup"	peg	gi|57116681|ref|NC_000962.2|_2588804_2587287		Predicted Zn-dependent proteases and their inactivated homologs		CDS	modulator of DNA gyrase family protein			
+	2588838	2589710	873	"Multiple sugar ABC transporter, membrane-spanning permease protein MsmF"	peg	gi|57116681|ref|NC_000962.2|_2588898_2589710		carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
+	2589697	2590521	825	"Sugar ABC transporter, permease protein"	peg	gi|57116681|ref|NC_000962.2|_2589739_2590521		carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
+	2590518	2591840	1323	Periplasmic sugar-binding lipoprotein UspC	peg	gi|57116681|ref|NC_000962.2|_2590518_2591840		carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	bacterial extracellular solute-binding family protein			
-	2591848	2592726	879	Universal stress protein family	peg	gi|57116681|ref|NC_000962.2|_2592726_2591848		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress family protein			
-	2592723	2594153	1431	Cationic amino acid transport integral membrane protein RocE	peg	gi|57116681|ref|NC_000962.2|_2594153_2592723		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	amino acid permease family protein			
-	2594154	2594705	552	Ornithine aminotransferase (EC 2.6.1.13)	peg	gi|57116681|ref|NC_000962.2|_2594705_2594154		Ornithine/acetylornithine aminotransferase	2.6.1.13	CDS	aminotransferase class-III family protein			
-	2594699	2595364	666	Ornithine aminotransferase (EC 2.6.1.13) ; N-terminus domain	peg	gi|57116681|ref|NC_000962.2|_2595364_2594699		Ornithine/acetylornithine aminotransferase	2.6.1.13	CDS	aminotransferase class-III family protein			
-	2595361	2596134	774	"NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)"	peg	gi|57116681|ref|NC_000962.2|_2596134_2595361		N-Dimethylarginine dimethylaminohydrolase		CDS	amidinotransferase family protein			
+	2596334	2596780	447	"Transcriptional regulator, AsnC family"	peg	gi|57116681|ref|NC_000962.2|_2596334_2596780		transcriptional regulator, AsnC family		CDS	asnC family protein			
-	2597009	2597857	849	Transmembrane component of energizing module of ECF transporters in Mycobacteria	peg	gi|57116681|ref|NC_000962.2|_2597857_2597009		ABC-type cobalt transport system, permease component CbiQ and related transporters		CDS	cobalt transport family protein			
-	2597854	2599947	2094	Candidate substrate-specific domain of ECF transporters in Mycobacteria / Duplicated ATPase component of energizing module of predicted ECF transporter in Mycobacteria	peg	gi|57116681|ref|NC_000962.2|_2599827_2597854		ATPase components of various ABC-type transport systems, contain duplicated ATPase		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
+	2599988	2600479	492	"Transcriptional regulator, MarR family"	peg	gi|57116681|ref|NC_000962.2|_2599988_2600479		Transcriptional regulators		CDS	hxlR-like helix-turn-helix family protein			
+	2600731	2601879	1149	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2600731_2601879		PE family.		CDS	PE family protein			
-	2601914	2603461	1548	Nitrate/nitrite transporter	peg	gi|57116681|ref|NC_000962.2|_2603461_2601914		Nitrate/nitrite transporter		CDS	major Facilitator Superfamily protein			
-	2603695	2604222	528	Lipoprotein LppP	peg	gi|57116681|ref|NC_000962.2|_2604222_2603695		LppP/LprE lipoprotein.		CDS	lppP/LprE lipofamily protein			
+	2604297	2604683	387	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2604297_2604683		hypothetical protein		CDS	conserved hypothetical protein			
-	2606708	2608321	1614	"Drug resistance transporter, EmrB/QacA subfamily"	peg	gi|57116681|ref|NC_000962.2|_2608321_2606708		drug resistance transporter, EmrB/QacA subfamily		CDS	multidrug resistance protein stp		stp	
+	2605108	2606754	1647	NAD-dependent malic enzyme (EC 1.1.1.38)	peg	gi|57116681|ref|NC_000962.2|_2605108_2606754		Malic enzyme	1.1.1.38	CDS	putative NAD-dependent malic enzyme 2			
+	2608348	2608518	171	FIG00823263: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2608348_2608518					hypothetical protein			
+	2608796	2609728	933	Cysteine synthase (EC 2.5.1.47)	peg	gi|57116681|ref|NC_000962.2|_2608796_2609728		cysteine synthase (EC 2.5.1.47)	2.5.1.47	CDS	cysteine synthase A	2.5.1.47	cysK	
+	2609732	2610421	690	Serine acetyltransferase (EC 2.3.1.30)	peg	gi|57116681|ref|NC_000962.2|_2609732_2610421		serine O-acetyltransferase (EC 2.3.1.30)	2.3.1.30	CDS	serine O-acetyltransferase	2.3.1.30	cysE	
+	2610837	2611805	969	FIG00823443: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2611053_2611805		hypothetical protein		CDS	conserved hypothetical protein			
-	2611869	2612987	1119	FIG031860: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2612960_2611869		hypothetical protein		CDS	conserved hypothetical protein			
-	2613107	2614063	957	Molybdopterin biosynthesis protein MoeW	peg	gi|57116681|ref|NC_000962.2|_2613874_2613107		Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2		CDS	thiF family protein			
+	2614693	2617581	2889	Transmembrane transport protein MmpL9	peg	gi|57116681|ref|NC_000962.2|_2614714_2617581		Transport protein		CDS	transport family protein			
-	2617667	2618908	1242	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2618908_2617667		PE family.		CDS	PE family protein			
-	2619023	2619193	171	FIG00821429: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2619193_2619023					conserved hypothetical protein			
+	2619582	2620016	435	Lipoprotein LppQ	peg	gi|57116681|ref|NC_000962.2|_2619597_2620016		hypothetical protein		CDS	putative lipoprotein lppQ			
+	2620236	2620529	294	FIG00820230: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2620272_2620529		hypothetical protein		CDS	conserved hypothetical protein			
-	2620533	2622452	1920	DNA primase (EC 2.7.7.-)	peg	gi|57116681|ref|NC_000962.2|_2622452_2620533		DNA primase (EC 2.7.7.-)	2.7.7.-	CDS	DNA primase	2.7.7.-	dnaG	
-	2622457	2623752	1296	deoxyguanosinetriphosphate triphosphohydrolase-like protein	peg	gi|57116681|ref|NC_000962.2|_2623752_2622457		deoxyguanosinetriphosphate triphosphohydrolase, putative	3.1.5.1	CDS	dGTPase family protein	3.1.5.1	dgt	
+	2623821	2625803	1983	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2623821_2625803		Beta-propeller domains of methanol dehydrogenase type		CDS	repair family protein			
-	2625888	2626172	285	ESAT-6-like protein EsxL	peg	gi|57116681|ref|NC_000962.2|_2626172_2625888		Proteins of 100 residues with WXG.		CDS	putative ESAT-6-like protein 6			
-	2626223	2626519	297	ESAT-6-like protein EsxK	peg	gi|57116681|ref|NC_000962.2|_2626519_2626223		WXG100 family type VII secretion target		CDS	putative ESAT-6-like protein 7			
-	2626654	2626980	327	FIG041762: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2626956_2626654		hypothetical protein		CDS	conserved hypothetical protein			
-	2627172	2628725	1554	Phospholipase C 3 PlcC (EC 3.1.4.3)	peg	gi|57116681|ref|NC_000962.2|_2628722_2627172		Phospholipase C	3.1.4.3	CDS	phospholipase C 1	3.1.4.3	plcA	
-	2628781	2630346	1566	Phospholipase C 3 PlcC (EC 3.1.4.3)	peg	gi|57116681|ref|NC_000962.2|_2630346_2628781		Phospholipase C	3.1.4.3	CDS	phospholipase C 2	3.1.4.3	plcB	
-	2630537	2632099	1563	Phospholipase C 3 PlcC (EC 3.1.4.3)	peg	gi|57116681|ref|NC_000962.2|_2632099_2630537		Phospholipase C	3.1.4.3	CDS	phospholipase C 1	3.1.4.3	plcA	
+	2632619	2632792	174	FIG00822803: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2632655_2632792		hypothetical protein		CDS	hypothetical protein			
-	2632923	2634191	1269	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2634098_2632923		PPE-repeat proteins		CDS	PPE family protein			
-	2634528	2635592	1065	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2635592_2634528		Pentapeptide repeats (8 copies).		CDS	pentapeptide repeats family protein			
+	2635628	2635954	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2635628_2635954		Transposase and inactivated derivatives		CDS	transposase family protein			
+	2636005	2636889	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2636005_2636889		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	2637688	2639535	1848	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2639535_2637688		PPE-repeat proteins		CDS	PPE family protein			
-	2639673	2641127	1455	Glycyl-tRNA synthetase (EC 6.1.1.14)	peg	gi|57116681|ref|NC_000962.2|_2641052_2639673		glycyl-tRNA synthetase (EC 6.1.1.14)	6.1.1.14	CDS	glycine--tRNA ligase	6.1.1.14	glyS	
+	2641246	2641653	408	"Transcriptional regulator, ArsR family"	peg	gi|57116681|ref|NC_000962.2|_2641246_2641653		transcriptional regulator, ArsR family		CDS	bacterial regulatory , arsR family protein			
+	2641650	2642042	393	Zinc uptake regulation protein ZUR	peg	gi|57116681|ref|NC_000962.2|_2641650_2642042		zinc uptake regulator, Fur family		CDS	ferric uptake regulator family protein			
-	2642150	2642578	429	FIG00820411: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2642578_2642150		hypothetical protein		CDS	conserved hypothetical protein			
-	2642578	2643468	891	Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31)	peg	gi|57116681|ref|NC_000962.2|_2643246_2642578		Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31)	2.5.1.86	CDS	di-trans,poly-cis-decaprenylcistransferase	2.5.1.31	uppS	
-	2643461	2644261	801	DNA recombination and repair protein RecO	peg	gi|57116681|ref|NC_000962.2|_2644261_2643461		DNA replication and repair protein RecO		CDS	DNA repair protein RecO		recO	
-	2645771	2646700	930	GTP-binding protein Era	peg	gi|57116681|ref|NC_000962.2|_2646700_2645771		GTP-binding protein Era		CDS	GTP-binding protein Era		era	
+	2644320	2645774	1455	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	peg	gi|57116681|ref|NC_000962.2|_2644320_2645774		Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	amidase family protein			
-	2646747	2647088	342	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2647088_2646747		hypothetical protein		CDS	conserved hypothetical protein			
-	2647060	2648367	1308	Magnesium and cobalt efflux protein CorC	peg	gi|57116681|ref|NC_000962.2|_2648367_2647060		Hemolysins and related proteins containing CBS domains		CDS	transporter associated domain protein			
-	2648364	2648912	549	"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"	peg	gi|57116681|ref|NC_000962.2|_2648912_2648364		metalloprotein, YbeY/UPF0054 family		CDS	putative rRNA maturation factor			
-	2648916	2649974	1059	"Phosphate starvation-inducible protein PhoH, predicted ATPase"	peg	gi|57116681|ref|NC_000962.2|_2649974_2648916		Phosphate starvation-inducible protein PhoH, predicted ATPase		CDS	phosphate starvation-inducible protein PhoH, predicted ATPase			
-	2650245	2651558	1314	Putative transcriptional activator protei	peg	gi|57116681|ref|NC_000962.2|_2651558_2650245		Regulator of polyketide synthase expression		CDS	pucR C-terminal helix-turn-helix domain protein			
+	2651753	2651938	186	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_2651753_2651938		PE family.		CDS	PE family protein			
-	2652037	2652825	789	Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_2652825_2652037		RNA methyltransferase, RsmE family	2.1.1.193	CDS	RNA methyltransferase, RsmE family protein	2.1.1.-		
-	2652839	2653987	1149	Chaperone protein DnaJ	peg	gi|57116681|ref|NC_000962.2|_2653987_2652839		DnaJ-class molecular chaperone with C-terminal Zn finger domain		CDS	dnaJ C terminal domain protein			
-	2654062	2655093	1032	Heat-inducible transcription repressor HrcA	peg	gi|57116681|ref|NC_000962.2|_2655093_2654062		heat-inducible transcription repressor HrcA		CDS	heat-inducible transcription repressor HrcA		hrcA	
+	2655265	2655582	318	FIG00996129: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2655265_2655582		Transcription regulator of the Arc/MetJ class		CDS	conserved hypothetical protein			
-	2655609	2656115	507	Low molecular weight antigen MTB12 precursor	peg	gi|57116681|ref|NC_000962.2|_2656115_2655609		hypothetical protein		CDS	low molecular weight antigen MTB12		mtb12	
-	2656215	2656430	216	Protein MbtH	peg	gi|57116681|ref|NC_000962.2|_2656430_2656215		Uncharacterized protein conserved in bacteria		CDS	protein mbtH		mbtH	
-	2656408	2657703	1296	L-lysine 6-monooxygenase MbtG (EC 1.14.13.59)	peg	gi|57116681|ref|NC_000962.2|_2657703_2656408		Lysine/ornithine N-monooxygenase		CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
-	2657700	2662085	4386	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_2662085_2657700		amino acid adenylation domain		CDS	amino acid adenylation domain protein			
-	2662067	2667262	5196	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_2667262_2662067		amino acid adenylation domain		CDS	amino acid adenylation domain protein			
-	2667255	2670269	3015	Polyketide synthetase MbtD	peg	gi|57116681|ref|NC_000962.2|_2670269_2667255		Polyketide synthase modules and related proteins		CDS	polysaccharide biosynthesis family protein			
-	2670269	2671603	1335	polyketide synthase	peg	gi|57116681|ref|NC_000962.2|_2671603_2670269		Beta-ketoacyl synthase, N-terminal domain./Beta-ketoacyl synthase, C-terminal domain.		CDS	beta-ketoacyl synthase, C-terminal domain protein			
-	2671593	2675837	4245	Phenyloxazoline synthase MbtB (EC 6.3.2.-)	peg	gi|57116681|ref|NC_000962.2|_2675837_2671593		amino acid adenylation domain		CDS	phenyloxazoline synthase MbtB	6.3.2.-	mbtB	
+	2675936	2677633	1698	Bifunctional salicyl-AMP ligase/salicyl-S-arcp synthetase MbtA	peg	gi|57116681|ref|NC_000962.2|_2675936_2677633		Peptide arylation enzymes	6.3.2.-	CDS	2,3-dihydroxybenzoate-AMP ligase	6.3.2.-	dhbE	
+	2677666	2678649	984	Acetyl hydrolase MbtJ	peg	gi|57116681|ref|NC_000962.2|_2677666_2678649		Esterase/lipase	3.1.1.-	CDS	alpha/beta hydrolase fold family protein			
-	2678653	2680005	1353	isochorismate synthase MbtI	peg	gi|57116681|ref|NC_000962.2|_2680005_2678653		salicylate synthase (EC 4.1.3.-)	4.2.99.21, 5.4.4.2	CDS	salicylate synthase	5.4.4.2		
+	2680458	2680667	210	FIG00820609: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2680458_2680667		hypothetical protein		CDS	conserved hypothetical protein			
-	2682015	2683187	1173	"Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type"	peg	gi|57116681|ref|NC_000962.2|_2683187_2682015		coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22)	1.3.99.22	CDS	radical SAM superfamily protein			
+	2680765	2682018	1254	putative sodium-dependent bicarbonate transporter	peg	gi|57116681|ref|NC_000962.2|_2680765_2682018		Predicted permease		CDS	conserved hypothetical protein			
-	2683248	2683712	465	Resuscitation-promoting factor RpfD	peg	gi|57116681|ref|NC_000962.2|_2683640_2683248		Transglycosylase-like domain.		CDS	transglycosylase-like domain protein			
-	2683709	2684275	567	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2684173_2683709		hypothetical protein		CDS	conserved hypothetical protein			
+	2684703	2686370	1668	"Ferredoxin--sulfite reductase, actinobacterial type (EC 1.8.7.1)"	peg	gi|57116681|ref|NC_000962.2|_2684703_2686370		Sulfite reductase, beta subunit (hemoprotein)	1.8.7.1	CDS	sulfite reductase [ferredoxin]	1.8.7.1	sir	
+	2686367	2687131	765	Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10)	peg	gi|57116681|ref|NC_000962.2|_2686367_2687131		phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8)	1.8.4.8	CDS	adenylylsulfate reductase, thioredoxin dependent family protein	1.8.4.10		
+	2687110	2687973	864	Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	peg	gi|57116681|ref|NC_000962.2|_2687110_2687973		Uncharacterized conserved protein		CDS	cbiX family protein			
+	2688010	2689941	1932	Gamma-glutamyltranspeptidase (EC 2.3.2.2)	peg	gi|57116681|ref|NC_000962.2|_2688010_2689941		gamma-glutamyltransferase 1 (EC:2.3.2.2). Threonine peptidase. MEROPS family T03	2.3.2.2	CDS	gamma-glutamyltranspeptidase family protein			
+	2690072	2692075	2004	Oligopeptide transporter	peg	gi|57116681|ref|NC_000962.2|_2690072_2692075		putative oligopeptide transporter, OPT family		CDS	oligopeptide transporter, OPT family			
+	2692224	2692439	216	FIG00820713: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2692242_2692439					conserved hypothetical protein			
+	2692562	2692715	154							conserved hypothetical protein			
+	2692799	2693884	1086	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2692799_2693884		PE family.		CDS	PE family protein			
-	2693909	2694964	1056	Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)	peg	gi|57116681|ref|NC_000962.2|_2694964_2693909		sulfate ABC transporter, ATP-binding protein	3.6.3.25	CDS	sulfate/thiosulfate import ATP-binding protein CysA	3.6.3.25	cysA	
-	2694981	2695799	819	Sulfate transport system permease protein CysW	peg	gi|57116681|ref|NC_000962.2|_2695799_2694981		sulfate ABC transporter, permease protein CysW		CDS	sulfate ABC transporter, permease protein CysW		cysW	
-	2695796	2696647	852	Sulfate transport system permease protein CysT	peg	gi|57116681|ref|NC_000962.2|_2696551_2695796		sulfate ABC transporter, permease protein CysT		CDS	sulfate ABC transporter, permease protein CysT		cysT	
-	2696644	2697714	1071	Sulfate and thiosulfate binding protein CysP	peg	gi|57116681|ref|NC_000962.2|_2697627_2696644		sulfate/thiosulfate-binding protein		CDS	sulfate ABC transporter, sulfate-binding family protein			
-	2698042	2698245	204	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_2698245_2698042		hypothetical protein		CDS	conserved hypothetical protein			
+	2697905	2698057	153	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2697905_2698057					conserved hypothetical protein			
+	2698415	2700457	2043	Glucoamylase (EC 3.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_2698415_2700457		Glucoamylase and related glycosyl hydrolases		CDS	glycosyl hydrolases 15 family protein			
-	2700535	2701290	756	Lipoprotein LppR	peg	gi|57116681|ref|NC_000962.2|_2701290_2700535		PknH-like extracellular domain.		CDS	pknH-like extracellular domain protein			
-	2701287	2703257	1971	Translation elongation factor LepA	peg	gi|57116681|ref|NC_000962.2|_2703248_2701287		GTP-binding protein LepA		CDS	GTP-binding protein LepA	3.6.5.-	lepA	
+	2703269	2703838	570	RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)	peg	gi|57116681|ref|NC_000962.2|_2703269_2703838		PemK-like protein.		CDS	pemK-like family protein			
-	2704009	2704437	429	CBS domain protein	peg	gi|57116681|ref|NC_000962.2|_2704437_2704009		Predicted signal-transduction protein containing cAMP-binding and CBS domains		CDS	conserved hypothetical protein			
-	2705486	2705704	219	FIG00822338: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2705704_2705486					hypothetical protein			
+	2704697	2705518	822	metallo-beta-lactamase family protein	peg	gi|57116681|ref|NC_000962.2|_2704697_2705518		Metal-dependent hydrolases of the beta-lactamase superfamily III	3.1.26.11	CDS	metallo-beta-lactamase superfamily protein			
-	2706494	2707333	840	"Protein containing transglutaminase-like domain, putative cysteine protease"	peg	gi|57116681|ref|NC_000962.2|_2707333_2706494		Transglutaminase-like enzymes, putative cysteine proteases		CDS	transglutaminase-like superfamily protein			
-	2707333	2708310	978	Protein containing domains DUF403	peg	gi|57116681|ref|NC_000962.2|_2708310_2707333		Uncharacterized protein conserved in bacteria		CDS	A predicted alpha-helical domain with a conserved ER motif family protein			
-	2708310	2709965	1656	"Protein containing domains DUF404, DUF407"	peg	gi|57116681|ref|NC_000962.2|_2709956_2708310		Uncharacterized conserved protein		CDS	A circularly permuted ATPgrasp family protein			
+	2710075	2710335	261	SSU ribosomal protein S20p	peg	gi|57116681|ref|NC_000962.2|_2710075_2710335		SSU ribosomal protein S20P		CDS	ribosomal protein S20		rpsT	
-	2710351	2711319	969	DNA polymerase III delta subunit (EC 2.7.7.7)	peg	gi|57116681|ref|NC_000962.2|_2711319_2710351		DNA polymerase III, delta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III, delta subunit			
-	2711332	2712876	1545	DNA internalization-related competence protein ComEC/Rec2	peg	gi|57116681|ref|NC_000962.2|_2712876_2711332		ComEC/Rec2-related protein		CDS	comEC/Rec2-related domain protein			
-	2712891	2713784	894	Putative competence protein ComEA	peg	gi|57116681|ref|NC_000962.2|_2713784_2712891		competence protein ComEA helix-hairpin-helix repeat region		CDS	competence ComEA helix-hairpin-helix repeat region domain protein			
+	2713783	2714010	228	FIG00820458: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2713783_2714010					putative predicted protein			
-	2714124	2715326	1203	Enhanced intracellular survival protein	peg	gi|57116681|ref|NC_000962.2|_2715326_2714124		Predicted acetyltransferase involved in intracellular survival and related acetyltransferases		CDS	acetyltransferase domain protein			
-	2715472	2716314	843	"Hypothetical protein DUF194, DegV family"	peg	gi|57116681|ref|NC_000962.2|_2716314_2715472		EDD domain protein, DegV family		CDS	EDD, DegV family domain protein			
-	2716395	2717138	744	FIG00999365: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2717108_2716395		GDSL-like Lipase/Acylhydrolase family.		CDS	GDSL-like Lipase/Acylhydrolase family protein			
-	2717128	2717799	672	Phosphoglycerate mutase family	peg	gi|57116681|ref|NC_000962.2|_2717781_2717128		Fructose-2,6-bisphosphatase	5.4.2.1	CDS	histidine phosphatase super family protein			
-	2717796	2718176	381	Iojap protein	peg	gi|57116681|ref|NC_000962.2|_2718176_2717796		iojap-like ribosome-associated protein		CDS	oligomerisation domain protein			
-	2718173	2718808	636	Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	peg	gi|57116681|ref|NC_000962.2|_2718808_2718173		nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	2.7.7.18	CDS	nicotinate (nicotinamide) nucleotide adenylyltransferase	2.7.7.18	nadD	
-	2718844	2719047	204				hypothetical protein		CDS				
+	2719083	2719355	273	FIG00823750: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2719083_2719355		hypothetical protein		CDS	hypothetical protein			
+	2719597	2720643	1047	SAM-dependent methyltransferases	peg	gi|57116681|ref|NC_000962.2|_2719597_2720643		Dimethyladenosine transferase (rRNA methylation)		CDS	tellurite resistance TehB family protein			
-	2720776	2721777	1002	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2721777_2720776		Transposase and inactivated derivatives		CDS	transposase IS116/IS110/IS902 family protein			
-	2721866	2723308	1443	VWA containing CoxE family protein	peg	gi|57116681|ref|NC_000962.2|_2723245_2721866		Protein containing von Willebrand factor type A (vWA) domain		CDS	VWA domain containing CoxE-like family protein			
-	2723308	2724183	876	MoxR-like ATPases	peg	gi|57116681|ref|NC_000962.2|_2724183_2723308		MoxR-like ATPases		CDS	ATPase associated with various cellular activities family protein			
-	2724230	2725477	1248	Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	peg	gi|57116681|ref|NC_000962.2|_2725477_2724230		glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41)	1.2.1.41	CDS	glutamate-5-semialdehyde dehydrogenase	1.2.1.41	proA	
-	2725595	2725828	234				hypothetical protein		CDS	putative hydrogen peroxide-inducible gene activator			
+	2725578	2725847	270	FIG00826286: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2725578_2725847								
-	2725866	2726060	195	FIG00820063: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2726060_2725866		Bacterial regulatory helix-turn-helix protein, lysR family.		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	2726193	2726780	588	Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	peg	gi|57116681|ref|NC_000962.2|_2726193_2726780		Peroxiredoxin	1.11.1.15	CDS	alkyl hydroperoxide reductase subunit C	1.11.1.15	ahpC	
-	2727336	2727920	585	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2727920_2727336		PPE family.		CDS	PPE family protein			
+	2726806	2727339	534	Alkylhydroperoxidase protein D	peg	gi|57116681|ref|NC_000962.2|_2726806_2727339		alkylhydroperoxidase, AhpD family		CDS	alkylhydroperoxidase, AhpD family protein	1.11.1.15	ahpD	
-	2727967	2728266	300	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2728266_2727967		PE family.		CDS	PE family protein			
+	2728327	2728500	174	FIG00823203: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2728327_2728500					hypothetical protein			
-	2728844	2729134	291	FIG00823410: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2729134_2728844		hypothetical protein		CDS	putative methyltransferase type 11			
-	2729115	2730560	1446	Small-conductance mechanosensitive channel membrane protein	peg	gi|57116681|ref|NC_000962.2|_2730560_2729115		Small-conductance mechanosensitive channel		CDS	cyclic nucleotide-binding domain protein			
-	2730557	2732749	2193	Adenylate cyclase (EC 4.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_2732749_2730557		Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.-	CDS	HAMP domain protein			
-	2732893	2733096	204	FIG00830561: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2733096_2732893								
+	2732991	2733246	256							hypothetical protein			
+	2733230	2734144	915	Ribokinase (EC 2.7.1.15)	peg	gi|57116681|ref|NC_000962.2|_2733299_2734144		Sugar kinases, ribokinase family	2.7.1.15	CDS	RIBOKINASE RBSK	2.7.1.15	rbsK	
-	2734199	2734402	204	FIG00820419: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2734402_2734199					putative predicted protein			
-	2734792	2737008	2217	NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase	peg	gi|57116681|ref|NC_000962.2|_2737008_2734792		NAD synthase	6.3.5.1	CDS	glutamine-dependent NAD(+) synthetase	6.3.5.1	nadE	
+	2734358	2734795	438	Putative protein-S-isoprenylcysteine methyltransferase	peg	gi|57116681|ref|NC_000962.2|_2734421_2734795		Phospholipid methyltransferase.		CDS	isoprenylcysteine carboxyl methyltransferase family protein			
-	2737117	2738247	1131	Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA	peg	gi|57116681|ref|NC_000962.2|_2738199_2737117		glutamate 5-kinase	2.7.2.11	CDS	glutamate 5-kinase	2.7.2.11	proB	
-	2738247	2739701	1455	Obg	peg	gi|57116681|ref|NC_000962.2|_2739686_2738247		Obg family GTPase CgtA		CDS	obg family GTPase CgtA		cgtA	
-	2739772	2740032	261	LSU ribosomal protein L27p	peg	gi|57116681|ref|NC_000962.2|_2740032_2739772		LSU ribosomal protein L27P		CDS	ribosomal protein L27		rpmA	
-	2740047	2740361	315	LSU ribosomal protein L21p	peg	gi|57116681|ref|NC_000962.2|_2740361_2740047		LSU ribosomal protein L21P		CDS	ribosomal protein L21		rplU	
-	2740528	2740974	447	FIG00822907: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2740974_2740528					conserved hypothetical protein			
-	2742123	2744984	2862	Ribonuclease E (EC 3.1.26.12)	peg	gi|57116681|ref|NC_000962.2|_2744870_2742123		ribonuclease, Rne/Rng family	3.1.26.12	CDS	ribonuclease, Rne/Rng family domain protein	3.1.4.-		
+	2740709	2742184	1476				Na+/H+-dicarboxylate symporters		CDS				
-	2745314	2745736	423	Nucleoside diphosphate kinase (EC 2.7.4.6)	peg	gi|57116681|ref|NC_000962.2|_2745736_2745314		nucleoside diphosphate kinase (EC 2.7.4.6)	2.7.4.6	CDS	nucleoside diphosphate kinase	2.7.4.6	ndk	
-	2745767	2746138	372	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2746138_2745767		Protein of unknown function (DUF4233).		CDS	conserved hypothetical protein			
-	2746135	2747598	1464	Dihydrofolate synthase (EC 6.3.2.12) / Folylpolyglutamate synthase (EC 6.3.2.17)	peg	gi|57116681|ref|NC_000962.2|_2747598_2746135		folylpolyglutamate synthase/dihydrofolate synthase	6.3.2.12, 6.3.2.17	CDS	bifunctional FolC family protein	6.3.2.-	folC	
-	2747595	2750255	2661	Valyl-tRNA synthetase (EC 6.1.1.9)	peg	gi|57116681|ref|NC_000962.2|_2750255_2747595		valyl-tRNA synthetase (EC 6.1.1.9)	6.1.1.9	CDS	valine--tRNA ligase	6.1.1.9	valS	
-	2750313	2751572	1260	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2751572_2750313		Uncharacterized conserved protein		CDS	putative trans-acting enoyl reductase Rv2449c			
-	2751662	2752228	567	Putative saccharopine dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_2752180_2751662		Transglycosylase-like domain.		CDS	transglycosylase-like domain protein			
-	2753018	2753554	537	Molybdopterin-guanine dinucleotide biosynthesis protein MobA	peg	gi|57116681|ref|NC_000962.2|_2753494_2753018		molybdenum cofactor guanylyltransferase (EC 2.7.7.77)		CDS	mobA-like NTP transferase domain protein			
-	2753625	2754746	1122	"2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)"	peg	gi|57116681|ref|NC_000962.2|_2754746_2753625		Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit	1.2.7.3	CDS	thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			
-	2754743	2756704	1962	"2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)"	peg	gi|57116681|ref|NC_000962.2|_2756704_2754743		2-oxoacid:acceptor oxidoreductase, alpha subunit	1.2.7.3	CDS	acceptor oxidoreductase, alpha subunit			
-	2756936	2758192	1257	Integral membrane transport protein	peg	gi|57116681|ref|NC_000962.2|_2758192_2756936		Sugar phosphate permease		CDS	major Facilitator Superfamily protein			
-	2758208	2759488	1281	ATP-dependent Clp protease ATP-binding subunit ClpX	peg	gi|57116681|ref|NC_000962.2|_2759488_2758208		ATP-dependent Clp protease ATP-binding subunit ClpX (EC 3.4.21.92)		CDS	ATP-dependent Clp protease, ATP-binding subunit ClpX		clpX	
+	2759779	2760687	909	Homocysteine S-methyltransferase (EC 2.1.1.10)	peg	gi|57116681|ref|NC_000962.2|_2759779_2760687		homocysteine S-methyltransferase (EC 2.1.1.10)	2.1.1.10	CDS	homocysteine S-methyltransferase	2.1.1.10	mmuM	
+	2760764	2762380	1617	Multidrug resistance integral membrane efflux protein EmrB	peg	gi|57116681|ref|NC_000962.2|_2760782_2762380		Arabinose efflux permease		CDS	multidrug resistance protein stp		stp	
-	2762531	2763175	645	ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	peg	gi|57116681|ref|NC_000962.2|_2763175_2762531		ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)	3.4.21.92	CDS	ATP-dependent Clp protease proteolytic subunit 2	3.4.21.92	clpP2	
-	2763172	2763774	603	ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	peg	gi|57116681|ref|NC_000962.2|_2763774_2763172		ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)	3.4.21.92	CDS	ATP-dependent Clp protease proteolytic subunit 1	3.4.21.92	clpP1	
-	2763891	2765291	1401	Cell division trigger factor (EC 5.2.1.8)	peg	gi|57116681|ref|NC_000962.2|_2765291_2763891		trigger factor		CDS	trigger factor	5.2.1.8	tig	
+	2765655	2766839	1185	Esterase A	peg	gi|57116681|ref|NC_000962.2|_2765655_2766839		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
-	2766859	2767665	807	Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	peg	gi|57116681|ref|NC_000962.2|_2767665_2766859		Formamidopyrimidine-DNA glycosylase	3.2.2.-, 4.2.99.18	CDS	formamidopyrimidine-DNA glycosylase H2TH domain protein			
-	2767671	2768171	501	Ribose 5-phosphate isomerase B (EC 5.3.1.6) / Galactose 6-phosphate isomerase	peg	gi|57116681|ref|NC_000962.2|_2768171_2767671		ribose 5-phosphate isomerase	5.3.1.6	CDS	ribose-5-phosphate isomerase B	5.3.1.6	rpiB	
-	2768261	2768884	624	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2768884_2768261		Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis		CDS	DSBA-like thioredoxin domain protein			
+	2768986	2771571	2586	Membrane alanine aminopeptidase N (EC 3.4.11.2)	peg	gi|57116681|ref|NC_000962.2|_2768986_2771571		Membrane alanyl aminopeptidase (EC 3.4.11.2). Metallo peptidase. MEROPS family M01	3.4.11.2	CDS	aminopeptidase N	3.4.11.2	pepN	
-	2771644	2772111	468	FIG00997368: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2772111_2771644		hypothetical protein		CDS	conserved hypothetical protein			
-	2772098	2772340	243	FIG00821364: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2772340_2772098		hypothetical protein		CDS	conserved hypothetical protein			
-	2772367	2773098	732	HNH endonuclease family protein	peg	gi|57116681|ref|NC_000962.2|_2773098_2772367		Restriction endonuclease		CDS	HNH endonuclease family protein			
+	2773169	2773564	396	Hemoglobin-like protein HbO	peg	gi|57116681|ref|NC_000962.2|_2773169_2773564		Truncated hemoglobins		CDS	group 2 truncated hemoglobin glbO		glbO	
+	2773642	2775204	1563	Alpha-glucosidase (EC 3.2.1.20)	peg	gi|57116681|ref|NC_000962.2|_2773642_2775204		Glycosidases	3.2.1.20	CDS	alpha amylase, catalytic domain protein			
+	2775277	2775565	289							hypothetical protein			
+	2775568	2776284	717	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2775856_2776284		hypothetical protein		CDS	conserved hypothetical protein			
-	2776316	2776990	675	FIG01001213: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2776954_2776316		hypothetical protein		CDS	conserved hypothetical protein			
-	2776975	2777391	417	FIG00995656: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2777391_2776975		Predicted thioesterase	3.1.2.-	CDS	acyl-ACP thioesterase family protein			
-	2777388	2782277	4890	"NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form"	peg	gi|57116681|ref|NC_000962.2|_2782277_2777388		glutamate dehydrogenase (NAD) (EC 1.4.1.2)	1.4.1.2	CDS	bacterial NAD-glutamate dehydrogenase family protein			
-	2782366	2784042	1677	ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_2784042_2782366		ATP-binding cassette protein, ChvD family		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
-	2784123	2784608	486	Single-strand DNA binding protein	peg	gi|57116681|ref|NC_000962.2|_2784608_2784123		Single-stranded DNA-binding protein		CDS	single-strand binding family protein			
-	2784657	2785541	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2785541_2784657		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	2785592	2785918	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2785918_2785592		Transposase and inactivated derivatives		CDS	transposase family protein			
-	2786914	2789283	2370	Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	peg	gi|57116681|ref|NC_000962.2|_2789283_2786914		glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	2.3.1.15	CDS	acyltransferase family protein			
-	2789280	2791022	1743	Phosphoserine phosphatase (EC 3.1.3.3) / 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	peg	gi|57116681|ref|NC_000962.2|_2791022_2789280		1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	3.1.3.3, 2.3.1.51	CDS	HAD phosphoserine phosphatase-like hydrolase, IB family protein			
-	2791019	2792533	1515	"Acyltransferase, ws/dgat/mgat subfamily protein"	peg	gi|57116681|ref|NC_000962.2|_2792533_2791019		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		
-	2792550	2792720	171	FIG00822297: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2792720_2792550					hypothetical protein			
-	2792723	2793988	1266	Carboxylesterase LipQ	peg	gi|57116681|ref|NC_000962.2|_2793988_2792723		Esterase/lipase		CDS	alpha/beta hydrolase fold family protein			
+	2794350	2795120	771	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_2794350_2795120		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	putative enoyl-CoA hydratase echA14			
-	2795301	2797385	2085	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2797385_2795301		PE family.		CDS	PE family protein			
-	2797467	2800808	3342	"Adenylyl cyclase class-3/4/guanylyl cyclase / Disease resistance domain-containing protein / Tetratricopeptide repeat-containing protein / Transcriptional regulator, LuxR family"	peg	gi|57116681|ref|NC_000962.2|_2800808_2797467		Predicted ATPase		CDS	bacterial regulatory s, luxR family protein			
-	2801254	2806236	4983	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2806236_2801254		PE family.		CDS	PE family protein			
-	2806323	2806529	207	FIG00822820: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2806529_2806323		hypothetical protein		CDS	hypothetical protein			
+	2806665	2807288	624	Rossmann-fold nucleotide-binding protein	peg	gi|57116681|ref|NC_000962.2|_2806665_2807288		TIGR00725 family protein		CDS	conserved hypothetical protein			
+	2807269	2808030	762	FIG00824247: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2807278_2808030		Thymidylate synthase		CDS	thymidylate synthase family protein			
+	2808083	2808304	222	FIG00823232: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2808083_2808304					antitoxin VapB39		vapB39	
+	2808310	2808735	426	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_2808310_2808735		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC39			
-	2808758	2809939	1182	Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	peg	gi|57116681|ref|NC_000962.2|_2809906_2808758		Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes	2.3.1.12	CDS	putative DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE E2 COMPONENT PDHC			
-	2809936	2810982	1047	"Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)"	peg	gi|57116681|ref|NC_000962.2|_2810928_2809936		Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit	1.2.4.1	CDS	transketolase, pyrimidine binding domain protein			
-	2810993	2812066	1074	"Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)"	peg	gi|57116681|ref|NC_000962.2|_2812066_2810993		pyruvate dehydrogenase E1 component, alpha subunit	1.2.4.1	CDS	pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit	1.2.4.1	pdhA	
-	2812355	2813176	822	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	peg	gi|57116681|ref|NC_000962.2|_2813176_2812355		Citrate lyase beta subunit	4.1.3.34, 4.1.3.6	CDS	citrate lyase subunit beta-like protein	4.1.-.-	citE	
-	2813173	2813730	558	Oxidase regulatory-related protein	peg	gi|57116681|ref|NC_000962.2|_2813634_2813173		Acyl dehydratase		CDS	maoC like domain protein			
-	2813727	2814911	1185	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	peg	gi|57116681|ref|NC_000962.2|_2814911_2813727		butyryl-CoA dehydrogenase (EC 1.3.99.2)		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
-	2814916	2816880	1965	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	peg	gi|57116681|ref|NC_000962.2|_2816862_2814916		Acetyl/propionyl-CoA carboxylase, alpha subunit	6.3.4.14	CDS	acetyl-/propionyl-coenzyme A carboxylase alpha chain	6.3.4.14	accA1	
-	2816885	2818474	1590	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	peg	gi|57116681|ref|NC_000962.2|_2818474_2816885		Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)	6.4.1.4	CDS	carboxyl transferase domain protein			
-	2818471	2819127	657	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	peg	gi|57116681|ref|NC_000962.2|_2819097_2818471		3-oxoacid CoA-transferase, B subunit	2.8.3.5	CDS	3-oxoacid CoA-transferase, B subunit	2.8.3.-		
-	2819124	2819870	747	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	peg	gi|57116681|ref|NC_000962.2|_2819870_2819124		3-oxoacid CoA-transferase, A subunit	2.8.3.5	CDS	3-oxoacid CoA-transferase, A subunit	2.8.3.-		
-	2819953	2821596	1644	Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_2821596_2819953		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	AMP-binding enzyme family protein			
+	2821712	2822359	648	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_2821712_2822359		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	2823256	2824593	1338	Permease of the major facilitator transporter superfamily	peg	gi|57116681|ref|NC_000962.2|_2824533_2823256		Permeases of the major facilitator superfamily		CDS	major Facilitator Superfamily protein			
+	2822438	2823259	822	POSSIBLE CONSERVED PROLINE RICH MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_2822792_2823259		Mycobacterium membrane protein.		CDS	mycobacterium membrane family protein			
+	2824678	2825484	807	Short-chain dehydrogenase/reductase SDR	peg	gi|57116681|ref|NC_000962.2|_2824678_2825484		Short-chain dehydrogenases of various substrate specificities		CDS	short chain dehydrogenase family protein			
-	2825488	2827089	1602	ATPase	peg	gi|57116681|ref|NC_000962.2|_2827089_2825488		Predicted ATPase		CDS	ftsK/SpoIIIE family protein			
+	2827106	2827804	699	3'-to-5' oligoribonuclease (orn)	peg	gi|57116681|ref|NC_000962.2|_2827157_2827804		Oligoribonuclease (3'->5' exoribonuclease)	3.1.-	CDS	oligoribonuclease	3.1.-.-	orn	
-	2828556	2829851	1296	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2829851_2828556		Transposase and inactivated derivatives		CDS	transposase, Mutator family protein			
+	2829954	2830139	186	FIG00820308: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2829984_2830139		hypothetical protein		CDS	conserved hypothetical protein			
+	2830161	2830583	423	FIG00822709: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2830161_2830583		hypothetical protein		CDS	conserved hypothetical protein			
-	2830877	2831338	462	FIG00821053: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2831338_2830877		Predicted nucleic acid-binding protein, contains PIN domain		CDS	conserved hypothetical protein			
-	2831344	2832591	1248	DNA-binding protein	peg	gi|57116681|ref|NC_000962.2|_2832591_2831344		Predicted Zn peptidase		CDS	helix-turn-helix family protein			
-	2832710	2833513	804	FIG00821793: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2833513_2832710		hypothetical protein		CDS	conserved hypothetical protein			
-	2833510	2833761	252	FIG00820249: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2833761_2833510		hypothetical protein		CDS	conserved hypothetical protein			
-	2834109	2835335	1227	Lipoprotein LppS	peg	gi|57116681|ref|NC_000962.2|_2835266_2834109		Uncharacterized protein conserved in bacteria		CDS	L,D-transpeptidase catalytic domain protein			
+	2835785	2837263	1479	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2835785_2837263		PE family.		CDS	PE family protein			
-	2837388	2837615	228	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_2837612_2837388		Protein of unknown function (DUF3618).		CDS	conserved hypothetical protein			
-	2838129	2839541	1413	"Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A"	peg	gi|57116681|ref|NC_000962.2|_2839541_2838129		Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases		CDS	peptidase M20/M25/M40 family protein			
+	2837684	2838157	474	"Thiol peroxidase, Bcp-type (EC 1.11.1.15)"	peg	gi|57116681|ref|NC_000962.2|_2837684_2838157		Peroxiredoxin	1.11.1.15	CDS	putative peroxiredoxin Rv2521/MT2597			
-	2839538	2839930	393	Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	peg	gi|57116681|ref|NC_000962.2|_2839930_2839538		phosphopantetheine--protein transferase domain	2.7.8.7	CDS	holo-[acyl-carrier-protein] synthase	2.7.8.7	acpS	
-	2840123	2849332	9210	[Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase of FASI (EC 1.3.1.9) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61) / [Acyl-carrier-protein] malonyl transferase of FASI (EC 2.3.1.39) / [Acyl-carrier-protein] palmitoyl transferase of FASI (EC 2.3.1.-) / Acyl carrier protein of FASI / 3-oxoacyl-[acyl-carrier-protein] reductase of FASI (EC 1.1.1.100) / 3-oxoacyl-[acyl-carrier-protein] synthase of FASI (EC 2.3.1.41)	peg	gi|57116681|ref|NC_000962.2|_2849332_2840123		fatty acid synthase, bacterial type (EC 2.3.1.-)	2.3.1.-	CDS	beta-ketoacyl synthase, C-terminal domain protein			
-	2849852	2850574	723	Putative secreted protein	peg	gi|57116681|ref|NC_000962.2|_2850553_2849852		TAT (twin-arginine translocation) pathway signal sequence./Domain of unknown function (DUF1906).		CDS	conserved hypothetical protein			
+	2851091	2851318	228	FIG01257073: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2851133_2851318		Uncharacterized protein conserved in bacteria (DUF2191).		CDS	putative antitoxin VapB17			
+	2851315	2851716	402	FIG00821417: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2851315_2851716		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
-	2851751	2852671	921	Mrr restriction system protein	peg	gi|57116681|ref|NC_000962.2|_2852671_2851751		Restriction endonuclease		CDS	restriction endonuclease family protein			
-	2853012	2853236	225	FIG00825978: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2853236_2853012					transcriptional regulator, AbrB family domain protein			
+	2853316	2854266	951	ERCC4 domain-containing protein	peg	gi|57116681|ref|NC_000962.2|_2853316_2854266		ERCC4-type nuclease		CDS	lsr2 family protein			
-	2854267	2854686	420	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_2854686_2854267		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC39			
-	2854683	2854907	225	FIG00820351: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2854907_2854683					antitoxin VapB39		vapB39	
-	2854938	2857781	2844	Arginine decarboxylase (EC 4.1.1.19)	peg	gi|57116681|ref|NC_000962.2|_2857781_2854938		Arginine/lysine/ornithine decarboxylases	4.1.1.19	CDS	orn/Lys/Arg decarboxylase, major domain protein			
-	2857853	2858257	405	FIG00822125: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2858257_2857853		hypothetical protein		CDS	conserved hypothetical protein			
-	2858254	2858724	471	Transcription termination protein NusB	peg	gi|57116681|ref|NC_000962.2|_2858673_2858254		NusB antitermination factor		CDS	transcription antitermination factor NusB		nusB	
-	2858727	2859290	564	Translation elongation factor P	peg	gi|57116681|ref|NC_000962.2|_2859290_2858727		translation elongation factor P (EF-P)		CDS	translation elongation factor P		efp	
-	2859300	2860418	1119	"Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)"	peg	gi|57116681|ref|NC_000962.2|_2860355_2859300		Xaa-Pro aminopeptidase		CDS	putative metallopeptidase			
+	2860452	2861144	693	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2860452_2861144		Protein of unknown function (DUF1282).		CDS	conserved hypothetical protein			
-	2861148	2861591	444	3-dehydroquinate dehydratase II (EC 4.2.1.10)	peg	gi|57116681|ref|NC_000962.2|_2861591_2861148		3-dehydroquinate dehydratase (EC 4.2.1.10)	4.2.1.10	CDS	3-dehydroquinate dehydratase, type II	4.2.1.10	aroQ	
-	2861588	2862676	1089	3-dehydroquinate synthase (EC 4.2.3.4)	peg	gi|57116681|ref|NC_000962.2|_2862676_2861588		3-dehydroquinate synthase (EC 4.2.3.4)	4.2.3.4	CDS	3-dehydroquinate synthase	4.2.3.4	aroB	
-	2862673	2863203	531	Shikimate kinase I (EC 2.7.1.71)	peg	gi|57116681|ref|NC_000962.2|_2863203_2862673		shikimate kinase (EC 2.7.1.71)	2.7.1.71	CDS	shikimate kinase family protein			
-	2863207	2864445	1239	Chorismate synthase (EC 4.2.3.5)	peg	gi|57116681|ref|NC_000962.2|_2864445_2863207		chorismate synthase (EC 4.2.3.5)	4.2.3.5	CDS	chorismate synthase	4.2.3.5	aroC	
+	2864520	2864834	315	FIG00824306: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2864526_2864834		Protein of unknown function (DUF2580).		CDS	conserved hypothetical protein			
+	2865130	2866341	1212	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_2865130_2866341		Alpha/beta hydrolase.		CDS	alpha/beta hydrolase family protein			
+	2866468	2867127	660	Lipoprotein LppA	peg	gi|57116681|ref|NC_000962.2|_2866468_2867127		hypothetical protein		CDS	putative lipoprotein lppA			
+	2867124	2867786	663	Lipoprotein LppA	peg	gi|57116681|ref|NC_000962.2|_2867124_2867786		hypothetical protein		CDS	putative lipoprotein lppA			
-	2868058	2868261	204							hypothetical protein			
+	2867783	2868061	279	hypothetical protein Rv2545	peg	gi|57116681|ref|NC_000962.2|_2867783_2868061		Transcription regulator of the Arc/MetJ class		CDS	conserved hypothetical protein			
+	2868151	2868567	417	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_2868151_2868567		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
+	2868591	2868863	273	"DNA-binding protein, CopG family"	peg	gi|57116681|ref|NC_000962.2|_2868591_2868863		Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain		CDS	putative antitoxin VapB19			
+	2868860	2869237	378	PIN domain protein	peg	gi|57116681|ref|NC_000962.2|_2868860_2869237		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC19			
-	2869253	2869627	375	FIG00821055: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2869627_2869253		hypothetical protein		CDS	conserved hypothetical protein			
-	2869727	2870122	396	hypothetical protein Rv2549c	peg	gi|57116681|ref|NC_000962.2|_2870122_2869727		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC20			
-	2870119	2870364	246	"DNA-binding protein, CopG family"	peg	gi|57116681|ref|NC_000962.2|_2870340_2870119		Ribbon-helix-helix protein, copG family.		CDS	antitoxin VapB20		vapB20	
-	2870775	2871194	420	probable type IV peptidase	peg	gi|57116681|ref|NC_000962.2|_2871194_2870775		Type II secretory pathway, prepilin signal peptidase PulO and related peptidases	3.4.23.43, 2.1.1.-	CDS	type IV leader peptidase family protein			
-	2871206	2872015	810	Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	peg	gi|57116681|ref|NC_000962.2|_2872015_2871206		shikimate dehydrogenase (EC 1.1.1.25)	1.1.1.25	CDS	shikimate-5-dehydrogenase	1.1.1.25	aroE	
-	2872012	2873265	1254	FIG004453: protein YceG like	peg	gi|57116681|ref|NC_000962.2|_2873265_2872012		Predicted periplasmic solute-binding protein		CDS	yceG-like family protein			
-	2873258	2873686	429	Putative Holliday junction resolvase YggF	peg	gi|57116681|ref|NC_000962.2|_2873686_2873258		RNAse H-fold protein YqgF	3.1.-	CDS	conserved hypothetical protein			
-	2873771	2876485	2715	Alanyl-tRNA synthetase (EC 6.1.1.7)	peg	gi|57116681|ref|NC_000962.2|_2876485_2873771		alanyl-tRNA synthetase (EC 6.1.1.7)	6.1.1.7	CDS	alanine--tRNA ligase	6.1.1.7	alaS	
-	2876576	2876977	402	FIG027887: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2876977_2876576		secondary thiamine-phosphate synthase enzyme		CDS	conserved hypothetical protein			
+	2877072	2877746	675	hypothetical protein Rv2558	peg	gi|57116681|ref|NC_000962.2|_2877360_2877746		hypothetical protein		CDS	antibiotic biosynthesis monooxygenase family protein			
+	2877918	2878541	624	FIG030001: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2877918_2878541		hypothetical protein		CDS	antibiotic biosynthesis monooxygenase family protein			
-	2878571	2879929	1359	"ATPase, AAA family"	peg	gi|57116681|ref|NC_000962.2|_2879929_2878571		Recombination protein MgsA		CDS	sigma-54 interaction domain protein			
-	2880965	2881288	324				hypothetical protein		CDS				
+	2880075	2881052	978	PROBABLE PROLINE AND GLYCINE RICH TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_2880075_2881052		Predicted integral membrane protein		CDS	conserved hypothetical protein			
-	2881307	2881471	165	FIG00825530: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2881471_2881307					putative predicted protein			
+	2881409	2881702	294				Protein of unknown function (DUF2652).		CDS				
+	2881641	2882147	507	FIG00821041: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2881641_2882147		Protein of unknown function (DUF2652).		CDS	conserved hypothetical protein			
+	2882290	2883339	1050	Glutamine-transport transmembrane protein ABC transporter	peg	gi|57116681|ref|NC_000962.2|_2882290_2883339		ABC-type transport system, involved in lipoprotein release, permease component		CDS	ftsX-like permease family protein			
+	2883342	2884334	993	Glutamine-transport ATP-binding protein ABC transporter GlnQ	peg	gi|57116681|ref|NC_000962.2|_2883342_2884334		ABC-type antimicrobial peptide transport system, ATPase component		CDS	ABC transporter family protein			
+	2884611	2886362	1752	Uncharacterized NTE family protein	peg	gi|57116681|ref|NC_000962.2|_2884611_2886362		Predicted esterase of the alpha-beta hydrolase superfamily		CDS	cyclic nucleotide-binding domain protein			
+	2886436	2889795	3360	Large protein containing transglutaminase-like domain	peg	gi|57116681|ref|NC_000962.2|_2886436_2889795		Uncharacterized protein conserved in bacteria		CDS	transglutaminase-like superfamily protein			
-	2892446	2893471	1026	FIG00821164: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2893471_2892446		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	2889795	2892449	2655	"Protein containing domains DUF404, DUF407, DUF403"	peg	gi|57116681|ref|NC_000962.2|_2889795_2892449		Uncharacterized conserved protein		CDS	A circularly permuted ATPgrasp family protein			
-	2893464	2894408	945	"Protein containing transglutaminase-like domain, putative cysteine protease"	peg	gi|57116681|ref|NC_000962.2|_2894408_2893464		Transglutaminase-like enzymes, putative cysteine proteases		CDS	transglutaminase-like superfamily protein			
-	2894893	2895960	1068	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2895960_2894893		Predicted membrane protein		CDS	conserved hypothetical protein			
+	2894512	2894901	390	FIG00822845: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2894512_2894901		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2896013	2897803	1791	Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	peg	gi|57116681|ref|NC_000962.2|_2897803_2896013		aspartyl-tRNA synthetase, bacterial type	6.1.1.12	CDS	aspartate--tRNA ligase	6.1.1.-	aspS	
+	2897956	2898783	828	2-dehydropantoate 2-reductase (EC 1.1.1.169)	peg	gi|57116681|ref|NC_000962.2|_2897956_2898783		ketopantoate reductase (EC 1.1.1.169)	1.1.1.169	CDS	2-dehydropantoate 2-reductase family protein	1.1.1.-		
+	2898806	2899309	504	FIG00820672: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2898806_2899309		Uncharacterized conserved protein		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	2899339	2900220	882	"YpfJ protein, zinc metalloprotease superfamily"	peg	gi|57116681|ref|NC_000962.2|_2899339_2900220		Predicted metalloprotease		CDS	neutral zinc metallopeptidase family protein			
-	2900226	2900648	423	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2900639_2900226		hypothetical protein		CDS	conserved hypothetical protein			
+	2900918	2902507	1590	Acid phosphatase (EC 3.1.3.2)	peg	gi|57116681|ref|NC_000962.2|_2900918_2902507		Predicted phosphohydrolases		CDS	calcineurin-like phosphoesterase family protein			
-	2902509	2903531	1023	Radical SAM domain protein	peg	gi|57116681|ref|NC_000962.2|_2903495_2902509		DNA repair photolyase		CDS	radical SAM superfamily protein			
+	2903639	2904541	903	Haloalkane dehalogenase (EC 3.8.1.5)	peg	gi|57116681|ref|NC_000962.2|_2903639_2904541		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.8.1.5	CDS	haloalkane dehalogenase 3	3.8.1.5	dhaA	
-	2904821	2906092	1272	Histidyl-tRNA synthetase (EC 6.1.1.21)	peg	gi|57116681|ref|NC_000962.2|_2906092_2904821		histidyl-tRNA synthetase (EC 6.1.1.21)	6.1.1.21	CDS	histidine--tRNA ligase	6.1.1.21	hisS	
-	2906089	2906763	675	Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	peg	gi|57116681|ref|NC_000962.2|_2906763_2906089		Zn-dependent hydrolases, including glyoxylases		CDS	metallo-beta-lactamase superfamily protein			
+	2906814	2907740	927	Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	peg	gi|57116681|ref|NC_000962.2|_2906862_2907740		Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8	CDS	cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein			
-	2907826	2910198	2373	"GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I"	peg	gi|57116681|ref|NC_000962.2|_2910198_2907826		(p)ppGpp synthetase, RelA/SpoT family	2.7.6.5	CDS	bifunctional (p)ppGpp synthase/hydrolase relA	3.1.7.2	relA	
-	2910229	2910900	672	Adenine phosphoribosyltransferase (EC 2.4.2.7)	peg	gi|57116681|ref|NC_000962.2|_2910744_2910229		Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins	2.4.2.7	CDS	adenine phosphoribosyltransferase	2.4.2.7	apt	
-	2911004	2912677	1674	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"	peg	gi|57116681|ref|NC_000962.2|_2912677_2911004		Bacterial extracellular solute-binding proteins, family 5 Middle.		CDS	bacterial extracellular solute-binding s, 5 Middle family protein			
-	2912683	2914011	1329	Protein-export membrane protein SecF (TC 3.A.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_2914011_2912683		protein translocase subunit secF		CDS	-export membrane protein SecF		secF	
-	2914015	2915736	1722	Protein-export membrane protein SecD (TC 3.A.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_2915736_2914015		protein-export membrane protein, SecD/SecF family		CDS	-export membrane protein SecD		secD	
-	2915846	2916193	348	Preprotein translocase subunit YajC (TC 3.A.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_2916193_2915846		preprotein translocase, YajC subunit		CDS	preprotein translocase, YajC subunit		yajC	
+	2916360	2917709	1350	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	peg	gi|57116681|ref|NC_000962.2|_2916360_2917709		4-aminobutyrate aminotransferase apoenzyme (EC 2.6.1.19)	2.6.1.19, 2.6.1.22	CDS	4-aminobutyrate transaminase	2.6.1.19	gabT	
+	2917871	2921377	3507	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_2917871_2921377		thioester reductase domain		CDS	thioester reductase domain protein			
+	2921551	2923182	1632	PE-PGRS virulence associated protein	peg	gi|57116681|ref|NC_000962.2|_2921551_2923182		PE family.		CDS	PE family protein			
-	2923199	2924233	1035	Holliday junction DNA helicase RuvB	peg	gi|57116681|ref|NC_000962.2|_2924233_2923199		Holliday junction DNA helicase subunit RuvB	3.6.4.12	CDS	holliday junction DNA helicase RuvB	3.6.4.12	ruvB	
-	2924230	2924820	591	Holliday junction DNA helicase RuvA	peg	gi|57116681|ref|NC_000962.2|_2924820_2924230		Holliday junction DNA helicase subunit RuvA	3.6.4.12	CDS	holliday junction DNA helicase RuvA	3.6.4.12	ruvA	
-	2924817	2925383	567	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	peg	gi|57116681|ref|NC_000962.2|_2925377_2924817		Holliday junction endonuclease RuvC (EC 3.1.22.4)	3.1.22.4	CDS	crossover junction endodeoxyribonuclease RuvC	3.1.22.4	ruvC	
+	2925492	2925737	246	FIG00823117: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2925492_2925737		looped-hinge helix DNA binding domain, AbrB family		CDS	antitoxin VapB40		vapB40	
+	2925734	2926138	405	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_2925734_2926138		PIN domain.		CDS	putative ribonuclease VapC40			
+	2926355	2926975	621	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2926355_2926975		Domain of unknown function (DUF4178).		CDS	conserved hypothetical protein			
+	2926986	2927480	495	FIG00993990: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2927046_2927480		Protein of unknown function DUF2617.		CDS	conserved hypothetical protein			
+	2927477	2927908	432	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2927477_2927908		Domain of unknown function (DUF4247).		CDS	conserved hypothetical protein			
+	2927990	2928391	402	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2927990_2928391		Domain of Unknown Function (DUF350).		CDS	conserved hypothetical protein			
+	2928388	2929959	1572	Spermidine synthase (EC 2.5.1.16)	peg	gi|57116681|ref|NC_000962.2|_2928445_2929959		Predicted spermidine synthase with an N-terminal membrane domain	2.5.1.16	CDS	spermine/spermidine synthase family protein			
+	2930070	2930357	288	FIG00821819: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2930070_2930357		hypothetical protein		CDS	antitoxin VapB41		vapB41	
+	2930344	2930784	441	FIG00820912: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2930344_2930784		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC41			
-	2930805	2931560	756	FIG000859: hypothetical protein YebC	peg	gi|57116681|ref|NC_000962.2|_2931560_2930805		DNA-binding regulatory protein, YebC/PmpR family		CDS	conserved hypothetical protein			
-	2931693	2932289	597	"Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)"	peg	gi|57116681|ref|NC_000962.2|_2932289_2931693		pyridoxal phosphate synthase yaaE subunit	2.6.-	CDS	pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2	2.6.-.-	pdxT	
-	2932297	2933142	846	Acyl-CoA thioesterase II (EC 3.1.2.-)	peg	gi|57116681|ref|NC_000962.2|_2933142_2932297		acyl-CoA thioesterase II	3.1.2.-	CDS	acyl-CoA thioesterase II	3.1.2.-	tesB	
-	2933171	2934070	900	"Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)"	peg	gi|57116681|ref|NC_000962.2|_2934070_2933171		pyridoxal phosphate synthase yaaD subunit	4.-	CDS	pyridoxal 5'-phosphate synthase, synthase subunit Pdx1			
+	2934198	2934872	675	Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	peg	gi|57116681|ref|NC_000962.2|_2934198_2934872		Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	1.4.3.5	CDS	pyridoxamine 5'-phosphate oxidase	1.4.3.5	pdxH	
+	2935046	2936788	1743	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_2935046_2936788		PPE-repeat proteins		CDS	PPE family protein			
-	2936810	2937865	1056	FIG019327: Probable conserved membrane protein	peg	gi|57116681|ref|NC_000962.2|_2937865_2936810		NTP pyrophosphohydrolases including oxidative damage repair enzymes		CDS	NUDIX domain protein			
-	2937865	2939001	1137	Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)	peg	gi|57116681|ref|NC_000962.2|_2939001_2937865		Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)	2.4.1.57	CDS	GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase	2.4.1.57	pimA	
-	2939012	2939962	951	Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis (Lauroyl/myristoyl acyltransferase)	peg	gi|57116681|ref|NC_000962.2|_2939911_2939012		Lauroyl/myristoyl acyltransferase	2.3.1.-	CDS	phosphatidylinositol mannoside acyltransferase	2.3.1.-		
-	2939959	2940627	669	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	peg	gi|57116681|ref|NC_000962.2|_2940627_2939959		CDP-diacylglycerol inositol 3-phosphatidyltransferase (EC 2.7.8.11)	2.7.8.5	CDS	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	2.7.8.11	pgsA1	
-	2940609	2941196	588	FIG049476: HIT family protein	peg	gi|57116681|ref|NC_000962.2|_2941196_2940609		Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases		CDS	AP-4-A phosphorylase	2.7.7.53		
-	2941189	2943564	2376	Threonyl-tRNA synthetase (EC 6.1.1.3)	peg	gi|57116681|ref|NC_000962.2|_2943564_2941189		threonyl-tRNA synthetase (EC 6.1.1.3)	6.1.1.3	CDS	threonine--tRNA ligase	6.1.1.3	thrS	
-	2943600	2945030	1431	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_2945030_2943600		PE family.		CDS	PE family protein			
+	2945330	2945830	501	FIG037376: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2945330_2945830		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2945847	2946287	441	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2946287_2945847		DoxX.		CDS	doxX family protein			
-	2947096	2947449	354	FIG00821167: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2947449_2947096		Uncharacterized conserved protein, contains double-stranded beta-helix domain		CDS	cupin domain protein			
+	2946383	2947111	729	Putative transcriptional regulatory protein	peg	gi|57116681|ref|NC_000962.2|_2946383_2947111		Predicted transcriptional regulator		CDS	helix-turn-helix domain protein			
-	2947462	2947887	426	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_2947887_2947462		hypothetical protein		CDS	putative membrane protein			
-	2947884	2948558	675	Putative transcriptional regulatory protein	peg	gi|57116681|ref|NC_000962.2|_2948558_2947884		Predicted transcriptional regulator		CDS	iclR helix-turn-helix domain protein			
+	2948636	2949457	822	Possible methyltransferase (Methylase)	peg	gi|57116681|ref|NC_000962.2|_2948636_2949457		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
+	2949593	2950486	894	Universal stress protein family	peg	gi|57116681|ref|NC_000962.2|_2949593_2950486		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress protein Rv2005c/MT2061			
-	2950489	2951283	795	Universal stress protein family	peg	gi|57116681|ref|NC_000962.2|_2951283_2950489		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress protein Rv2624c/MT2699			
-	2951322	2952503	1182	Probable conserved transmembrane alanine and leucine rich protein	peg	gi|57116681|ref|NC_000962.2|_2952503_2951322		Zn-dependent proteases		CDS	CBS domain protein			
-	2952562	2952993	432	CBS domain protein	peg	gi|57116681|ref|NC_000962.2|_2952993_2952562		Predicted transcriptional regulator with C-terminal CBS domains		CDS	hypoxic response protein 1			
-	2953507	2954673	1167	FIG00821576: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2954673_2953507		hypothetical protein		CDS	conserved hypothetical protein			
+	2955148	2955420	273	FIG00820447: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2955148_2955420		hypothetical protein		CDS	conserved hypothetical protein			
+	2955767	2956891	1125	FIG00822103: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2955767_2956891		Peptide chain release factor 1 (eRF1)		CDS	conserved hypothetical protein			
+	2956893	2957432	540	Archease	peg	gi|57116681|ref|NC_000962.2|_2956893_2957432		Uncharacterized conserved protein		CDS	archease family protein			
+	2957572	2958870	1299	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2957572_2958870		Uncharacterized conserved protein	6.5.1.3	CDS	conserved hypothetical protein			
-	2958909	2959190	282	FIG00823991: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2959190_2958909		Domain of unknown function (DUF1876).		CDS	conserved hypothetical protein			
-	2959335	2959820	486	FIG00822335: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2959820_2959335		Hemerythrin HHE cation binding domain.		CDS	hemerythrin HHE cation binding domain protein			
-	2959847	2960104	258	FIG00822363: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2960104_2959847		hypothetical protein		CDS	conserved hypothetical protein			
-	2960105	2962441	2337	PE family protein	peg	gi|57116681|ref|NC_000962.2|_2962441_2960105		PE family.		CDS	PE family protein			
+	2962761	2963390	630	FIG00822113: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2962770_2963390		Chloramphenicol 3-O-phosphotransferase		CDS	chloramphenicol phosphotransferase-like family protein			
+	2963586	2964242	657	DedA protein	peg	gi|57116681|ref|NC_000962.2|_2963586_2964242		Uncharacterized membrane-associated protein		CDS	conserved hypothetical protein			
+	2964405	2964851	447	Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV	peg	gi|57116681|ref|NC_000962.2|_2964525_2964851		anti-anti-sigma factor		CDS	anti-anti-sigma factor family protein			
-	2965026	2965358	333	FIG035174: membrane protein	peg	gi|57116681|ref|NC_000962.2|_2965358_2965026		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	2965478	2965837	360	"regulatory protein, ArsR"	peg	gi|57116681|ref|NC_000962.2|_2965837_2965478		transcriptional regulator, ArsR family		CDS	bacterial regulatory , arsR family protein			
+	2965939	2966397	459	Lactoylglutathione lyase (EC 4.4.1.5)	peg	gi|57116681|ref|NC_000962.2|_2965939_2966397		Lactoylglutathione lyase and related lyases		CDS	cadmium-induced protein CadI		cadI	
+	2966533	2966913	381	Arsenical resistance operon repressor	peg	gi|57116681|ref|NC_000962.2|_2966533_2966913		transcriptional regulator, ArsR family		CDS	bacterial regulatory , arsR family protein			
+	2966910	2968406	1497	PROBABLE ARSENIC-TRANSPORT INTEGRAL MEMBRANE PROTEIN ARSC	peg	gi|57116681|ref|NC_000962.2|_2966910_2968406		arsenical-resistance protein		CDS	arsenical-resistance protein		arsB	
+	2968524	2968832	309	FIG00823111: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2968641_2968832		Protein of unknown function (DUF3018).		CDS	conserved hypothetical protein			
+	2969716	2969875	160							hypothetical protein			
+	2970123	2970554	432	FIG00821032: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2970123_2970554		hypothetical protein		CDS	conserved hypothetical protein			
+	2970551	2971549	999	phage integrase family protein	peg	gi|57116681|ref|NC_000962.2|_2970551_2971549		Site-specific recombinase XerD		CDS	phage integrase family protein			
+	2971563	2972027	465	FIG00822089: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2971563_2972027		Predicted transcriptional regulators		CDS	parB-like nuclease domain protein			
+	2972160	2972486	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2972160_2972486		Transposase and inactivated derivatives		CDS	transposase family protein			
+	2972537	2973421	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2972537_2973421		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	2973448	2973633	186	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2973633_2973448					hypothetical protein			
-	2973795	2975234	1440	Phage major capsid protein	peg	gi|57116681|ref|NC_000962.2|_2975234_2973795		phage major capsid protein, HK97 family		CDS	phage major capsid protein, HK97 family			
-	2975242	2975775	534	"PhiRv1 phage, prohead protease, HK97 family"	peg	gi|57116681|ref|NC_000962.2|_2975775_2975242		prohead peptidase. Unknown type peptidase. MEROPS family U35		CDS	phage prohead protease, HK97 family	3.4.-.-		
-	2975928	2976428	501	Probable phiRv1 phage protein	peg	gi|57116681|ref|NC_000962.2|_2976428_2975928		phage terminase, small subunit, putative, P27 family		CDS	phage terminase, small subunit, P27 family			
-	2976586	2976909	324	FIG040773: hypothetical phiRv2 prophage protein	peg	gi|57116681|ref|NC_000962.2|_2976909_2976586		hypothetical protein		CDS	toxin Rv2653c/MT2730			
-	2976989	2977234	246	FIG050287: hypothetical phiRv2 prophage protein	peg	gi|57116681|ref|NC_000962.2|_2977234_2976989		hypothetical protein		CDS	hypothetical protein			
-	2977231	2978658	1428	FIG00821016: hypothetical phiRv2 prophage protein	peg	gi|57116681|ref|NC_000962.2|_2978658_2977231		Protein of unknown function (DUF3631).		CDS	conserved hypothetical protein			
-	2978660	2979052	393	Probable phiRv1 phage protein	peg	gi|57116681|ref|NC_000962.2|_2979052_2978660		Protein of unknown function (DUF2742).		CDS	conserved hypothetical protein			
-	2979049	2979246	198	"gene 36 protein, putative"	peg	gi|57116681|ref|NC_000962.2|_2979246_2979049		DNA binding domain, excisionase family		CDS	DNA binding , excisionase family domain protein			
-	2979326	2979691	366	FIG00821498: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2979688_2979326		hypothetical protein		CDS	conserved hypothetical protein			
-	2979691	2980818	1128	Integrase	peg	gi|57116681|ref|NC_000962.2|_2980818_2979691		Site-specific recombinase XerD		CDS	phage integrase family protein			
-	2980963	2981292	330	"Mb2678c, -, len: 73 aa. Equivalent to Rv2660c, len: 75 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 73 aa overlap). (questionable orf). Hypothetical unknown protein. REMARK-M.bovis-M.tuberculosis: In Mycobacterium bovis, a large 10982 bp deletion leads to deletion of genes between Mb2677c and Mb2678c compared to Mycobacterium tuberculosis strain H37Rv."	peg	gi|57116681|ref|NC_000962.2|_2981292_2980963					conserved hypothetical protein			
+	2981331	2981489	159	FIG00820863: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2981331_2981489		hypothetical protein		CDS	hypothetical protein			
+	2981853	2982086	234	FIG00820935: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2981853_2982086		hypothetical protein		CDS	conserved hypothetical protein			
+	2982097	2982351	255	FIG00821862: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2982097_2982351		hypothetical protein		CDS	conserved hypothetical protein			
+	2982699	2982980	282				hypothetical protein		CDS				
+	2983023	2983874	852	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_2983023_2983874		Transposase and inactivated derivatives		CDS	transposase, Mutator family protein			
+	2983896	2984654	759	putative ATP-dependent protease ATP-binding subunit clpX'( EC:3.4.- )	peg	gi|57116681|ref|NC_000962.2|_2983896_2984654		Clp amino terminal domain.		CDS	clp amino terminal domain protein			
+	2984733	2985254	522	Putative alanine and valine rich exported protein	peg	gi|57116681|ref|NC_000962.2|_2984733_2985254		hypothetical protein		CDS	conserved hypothetical protein			
-	2985731	2986804	1074	putative ATP/GTP-binding integral membrane protein	peg	gi|57116681|ref|NC_000962.2|_2986771_2985731		Predicted ATPase		CDS	AFG1-like ATPase family protein			
+	2985283	2985753	471	FIG00820775: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2985283_2985753		Acetyltransferases		CDS	acetyltransferase family protein			
+	2986839	2987615	777	5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) homolog	peg	gi|57116681|ref|NC_000962.2|_2986839_2987615		Pyrimidine reductase, riboflavin biosynthesis	3.5.4.26, 1.1.1.193	CDS	ribD C-terminal domain protein			
+	2987691	2989268	1578	FIG00995896: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2987691_2989268		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
+	2989291	2990592	1302	Putative membrane protein Q2 colocalized with Q	peg	gi|57116681|ref|NC_000962.2|_2989291_2990592		Protein of unknown function (DUF2029).		CDS	conserved hypothetical protein			
+	2990706	2991116	411	Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12)	peg	gi|57116681|ref|NC_000962.2|_2990706_2991116		methionine-R-sulfoxide reductase	1.8.4.12	CDS	methionine-R-sulfoxide reductase	1.8.4.-	msrB	
-	2991184	2991936	753	Methyltransferase (EC 2.1.1.-) colocalized with Q	peg	gi|57116681|ref|NC_000962.2|_2991936_2991184		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
-	2991933	2992628	696	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2992628_2991933		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	2992634	2993992	1359	"Protoporphyrinogen IX oxidase, aerobic (EC 1.3.3.4)"	peg	gi|57116681|ref|NC_000962.2|_2993947_2992634		protoporphyrinogen oxidase (EC 1.3.3.4)	1.3.3.4	CDS	protoporphyrinogen oxidase	1.3.3.4	hemG	
-	2993989	2995107	1119	Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	peg	gi|57116681|ref|NC_000962.2|_2995089_2993989		uroporphyrinogen decarboxylase (EC 4.1.1.37)	4.1.1.37	CDS	uroporphyrinogen decarboxylase	4.1.1.37	hemE	
+	2995115	2995945	831	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_2995115_2995945		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase EchA15		echA15	
+	2996003	2996737	735	Uncharacterized protein Q1 colocalized with Q	peg	gi|57116681|ref|NC_000962.2|_2996003_2996737		Protein of unknown function (DUF3000).		CDS	conserved hypothetical protein			
-	2998052	2999968	1917	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	peg	gi|57116681|ref|NC_000962.2|_2999968_2998052		1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)	2.2.1.7	CDS	1-deoxy-D-xylulose-5-phosphate synthase	2.2.1.7	dxs	
+	2996739	2998055	1317	Ribonuclease D (EC 3.1.26.3)	peg	gi|57116681|ref|NC_000962.2|_2996841_2998055		Ribonuclease D	3.1.13.5	CDS	3'-5' exonuclease family protein			
+	2999960	3000115	156	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_2999960_3000115					hypothetical protein			
+	3000112	3000609	498	FIG00822000: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3000112_3000609		CBS domain.		CDS	CBS domain protein			
+	3000614	3001903	1290	Na+/H+ antiporter NhaD type	peg	gi|57116681|ref|NC_000962.2|_3000614_3001903		possible tyrosine transporter P-protein (TC 2.A.45.2.1)		CDS	arsenical pump membrane family protein			
+	3001983	3003269	1287	Na+/H+ antiporter NhaD type	peg	gi|57116681|ref|NC_000962.2|_3001983_3003269		possible tyrosine transporter P-protein (TC 2.A.45.2.1)		CDS	arsenical pump membrane family protein			
-	3003280	3004038	759	PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND ALANINE AND VALINE RICH PROTEIN ABC TRANSPORTER	peg	gi|57116681|ref|NC_000962.2|_3004038_3003280		hypothetical protein		CDS	fluoroquinolones export permease protein Rv2686c/MT2760			
-	3004035	3004748	714	PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND VALINE RICH PROTEIN ABC TRANSPORTER	peg	gi|57116681|ref|NC_000962.2|_3004748_3004035		hypothetical protein		CDS	fluoroquinolones export permease protein Rv2687c/MT2761			
-	3004745	3005650	906	"ABC transporter, ATP-binding protein"	peg	gi|57116681|ref|NC_000962.2|_3005650_3004745		ABC-type multidrug transport system, ATPase component		CDS	fluoroquinolones export ATP-binding protein Rv2688c/MT2762	3.6.3.-		
-	3005845	3007062	1218	23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3007062_3005845		SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase		CDS	conserved hypothetical protein			
+	3005722	3005884	163							hypothetical protein			
-	3007236	3009326	2091	PROBABLE CONSERVED INTEGRAL MEMBRANE ALANINE AND VALINE AND LEUCINE RICH PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3009209_3007236		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	amino acid permease family protein			
+	3009344	3010027	684	Trk system potassium uptake protein TrkA	peg	gi|57116681|ref|NC_000962.2|_3009344_3010027		K+ transport systems, NAD-binding component		CDS	trkA-C domain protein			
+	3010024	3010686	663	Trk system potassium uptake protein TrkA	peg	gi|57116681|ref|NC_000962.2|_3010054_3010686		K+ transport systems, NAD-binding component		CDS	trkA-C domain protein			
-	3010697	3011368	672	PROBABLE CONSERVED INTEGRAL MEMBRANE ALANINE AND LEUCINE RICH PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3011368_3010697		Protein of unknown function (DUF3159).		CDS	conserved hypothetical protein			
-	3011399	3011767	369	FIG00945047: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3011767_3011399		ATP-dependent DNA helicase RecG (EC 3.6.1.-)		CDS	putative nucleic acid binding, OB-fold, tRNA/helicase-type			
+	3011916	3012623	708	FIG00994821: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3011916_3012623		Alpha/beta hydrolase family.		CDS	alpha/beta hydrolase fold family protein			
-	3012829	3013608	780	FIG00822685: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3013509_3012829		Protein of unknown function (DUF3710).		CDS	conserved hypothetical protein			
-	3013683	3014147	465	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	peg	gi|57116681|ref|NC_000962.2|_3014147_3013683		deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	3.6.1.23	CDS	deoxyuridine 5'-triphosphate nucleotidohydrolase	3.6.1.23	dut	
+	3014227	3014658	432	PROBABLE CONSERVED ALANINE RICH TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3014455_3014658		Protein of unknown function (DUF3093).		CDS	conserved hypothetical protein			
-	3014663	3014965	303	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3014863_3014663		Domain of unknown function (DUF4193).		CDS	conserved hypothetical protein			
+	3015425	3015853	429	Possible secreted alanine rich protein	peg	gi|57116681|ref|NC_000962.2|_3015425_3015853		LytR cell envelope-related transcriptional attenuator.		CDS	lytR cell envelope-related transcriptional attenuator family protein			
-	3015863	3016735	873	Inositol-1-monophosphatase (EC 3.1.3.25)	peg	gi|57116681|ref|NC_000962.2|_3016735_3015863		Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family	3.1.3.25	CDS	inositol-1-monophosphatase SuhB	3.1.3.25	suhB	
+	3016858	3017655	798	Polyphosphate glucokinase (EC 2.7.1.63)	peg	gi|57116681|ref|NC_000962.2|_3016858_3017655		Polyphosphate glucokinase (EC 2.7.1.63)	2.7.1.63	CDS	ROK family protein			
+	3017829	3019421	1593	"COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)"	peg	gi|57116681|ref|NC_000962.2|_3017829_3019421		RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma factor RpoD		rpoD	
-	3019814	3020197	384				Uncharacterized protein conserved in bacteria		CDS				
+	3019458	3019886	429	"Putative translation initiation inhibitor, YjgF family"	peg	gi|57116681|ref|NC_000962.2|_3019476_3019886		Putative translation initiation inhibitor, yjgF family		CDS	endoribonuclease L-PSP family protein			
+	3020323	3020511	189	FIG00820633: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3020323_3020511		hypothetical protein		CDS	conserved hypothetical protein			
+	3020573	3021547	975	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3020573_3021547		Predicted membrane protein		CDS	virulence factor BrkB family protein			
-	3021548	3021796	249	FIG00998432: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3021787_3021548		Protein of unknown function (DUF3039).		CDS	conserved hypothetical protein			
+	3021839	3022285	447	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3021857_3022285		Protein of unknown function (DUF3099).		CDS	conserved hypothetical protein			
+	3022431	3023432	1002	RNA polymerase sigma factor SigB	peg	gi|57116681|ref|NC_000962.2|_3022461_3023432		RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma factor, sigma-70 family protein			
+	3023565	3024257	693	Iron-dependent repressor IdeR/DtxR	peg	gi|57116681|ref|NC_000962.2|_3023565_3024257		iron (metal) dependent repressor, DtxR family		CDS	iron-dependent repressor IdeR		ideR	
-	3024270	3025352	1083	FIG00999418: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3025337_3024270		Domain of unknown function (DUF4192).		CDS	conserved hypothetical protein			
+	3025432	3026847	1416	Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_3025432_3026847		Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	1.6.1.1	CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	3027065	3028039	975	FIG00994994: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3027065_3028039		PAC2 family.		CDS	PAC2 family protein			
+	3028098	3029123	1026	"Hydrolase, alpha/beta fold family"	peg	gi|57116681|ref|NC_000962.2|_3028128_3029123		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	dienelactone hydrolase family protein			
+	3029172	3029858	687	Phenazine biosynthesis protein PhzF like	peg	gi|57116681|ref|NC_000962.2|_3029172_3029858		Predicted epimerase, PhzC/PhzF homolog		CDS	phenazine biosynthesis , PhzF family protein			
-	3029867	3030385	519	DUF1794	peg	gi|57116681|ref|NC_000962.2|_3030067_3029867		Domain of unknown function (DUF1794).		CDS	conserved hypothetical protein			
+	3030107	3030325	219	FIG00821726: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3030107_3030325					hypothetical protein			
-	3030413	3030877	465	Ribonucleotide reductase transcriptional regulator NrdR	peg	gi|57116681|ref|NC_000962.2|_3030877_3030413		transcriptional regulator NrdR		CDS	transcriptional regulator NrdR		nrdR	
-	3031040	3031537	498	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_3031330_3031040		LysM domain.		CDS	lysM domain protein			
+	3031752	3032498	747	SOS-response repressor and protease LexA (EC 3.4.21.88)	peg	gi|57116681|ref|NC_000962.2|_3031752_3032498		SOS-response transcriptional repressor, LexA	3.4.21.88	CDS	repressor LexA	3.4.21.88	lexA	
-	3032520	3034619	2100	Possible conserved transmembrane alanine and glycine rich protein	peg	gi|57116681|ref|NC_000962.2|_3034619_3032520		Uncharacterized protein potentially involved in peptidoglycan biosynthesis		CDS	LGFP repeat family protein			
+	3034909	3036102	1194	Integral membrane protein TerC	peg	gi|57116681|ref|NC_000962.2|_3034909_3036102		integral membrane protein, TerC family		CDS	integral membrane , TerC family protein			
-	3036131	3037291	1161	"putative acyl-CoA dehydrogenase fadE20( EC:1.3.99.-,EC:1.3.99.13 )"	peg	gi|57116681|ref|NC_000962.2|_3037291_3036131		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
-	3037427	3038914	1488	GTP-binding protein HflX	peg	gi|57116681|ref|NC_000962.2|_3038857_3037427		GTP-binding protein HflX (EC 3.1.5.-)		CDS	GTP-binding protein HflX		hflX	
-	3038931	3039809	879	Diaminopimelate epimerase (EC 5.1.1.7)	peg	gi|57116681|ref|NC_000962.2|_3039809_3038931		diaminopimelate epimerase (EC 5.1.1.7)	5.1.1.7	CDS	diaminopimelate epimerase	5.1.1.7	dapF	
-	3039825	3040769	945	tRNA dimethylallyltransferase (EC 2.5.1.75)	peg	gi|57116681|ref|NC_000962.2|_3040769_3039825		tRNA dimethylallyltransferase	2.5.1.75	CDS	tRNA dimethylallyltransferase	2.5.1.75	miaA	
-	3040766	3041461	696	FIG01121091: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3041461_3040766		hypothetical protein		CDS	conserved hypothetical protein			
-	3041570	3042475	906	"Putative conserved alanine, valine and leucine rich integral membrane protein"	peg	gi|57116681|ref|NC_000962.2|_3042475_3041570		hypothetical protein		CDS	putative membrane protein			
+	3042535	3042759	225	FIG00821119: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3042535_3042759					hypothetical protein			
-	3042816	3043181	366	FIG00820016: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3043181_3042816					hypothetical protein			
-	3044375	3044989	615	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3044989_3044375		hypothetical protein		CDS	putative transmembrane protein			
+	3043026	3044378	1353	ATPase involved in DNA repair	peg	gi|57116681|ref|NC_000962.2|_3043152_3044378		Domain of Unknown Function (DUF349).		CDS	conserved hypothetical protein			
-	3044986	3046524	1539	tRNA-i(6)A37 methylthiotransferase	peg	gi|57116681|ref|NC_000962.2|_3046524_3044986		tRNA-i(6)A37 thiotransferase enzyme MiaB		CDS	tRNA-i(6)A37 thiotransferase enzyme MiaB	2.-.-.-	miaB	
-	3047560	3048552	993	FIG032330: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3048255_3047560		hypothetical protein		CDS	conserved hypothetical protein			
+	3046821	3047675	855				Bacteriophage protein gp37		CDS				
-	3048562	3049098	537	Regulatory protein RecX	peg	gi|57116681|ref|NC_000962.2|_3049086_3048562		Uncharacterized protein conserved in bacteria		CDS	recX family protein			
-	3049052	3051424	2373	RecA protein @ intein-containing	peg	gi|57116681|ref|NC_000962.2|_3051424_3049052		intein/RecA protein		CDS	protein RecA		recA	
+	3051619	3051792	174	Conserved hypothetical cysteine rich protein	peg	gi|57116681|ref|NC_000962.2|_3051619_3051792					fhuF 2Fe-2S C-terminal domain protein			
-	3051806	3052012	207	FIG00820724: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3052000_3051806		Protein of unknown function (DUF3046).		CDS	conserved hypothetical protein			
-	3052023	3053189	1167	Alanine rich transferase	peg	gi|57116681|ref|NC_000962.2|_3053189_3052023		Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	glycosyltransferase family 28 C-terminal domain protein			
+	3053233	3053682	450	FIG00820841: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3053233_3053682		Limonene-1,2-epoxide hydrolase	3.3.2.8	CDS	snoaL-like domain protein			
+	3053914	3055491	1578	PE family protein	peg	gi|57116681|ref|NC_000962.2|_3053914_3055491		PE family.		CDS	PE family protein			
+	3055806	3056015	210	FIG00823950: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3055806_3056015					hypothetical protein			
-	3056420	3057232	813	Possible conserved membrane alanine rich protein	peg	gi|57116681|ref|NC_000962.2|_3057232_3056420		hypothetical protein		CDS	putative alanine rich transmembrane protein			
+	3056019	3056423	405	FIG00821935: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3056019_3056423		hypothetical protein		CDS	conserved hypothetical protein			
-	3057251	3058063	813	"Phage shock protein A (IM30) , suppresses sigma54-dependent transcription"	peg	gi|57116681|ref|NC_000962.2|_3058063_3057251		phage shock protein A (PspA) family protein		CDS	pspA/IM30 family protein			
-	3058193	3058549	357	"Transcriptional regulator, XRE family"	peg	gi|57116681|ref|NC_000962.2|_3058549_3058193		Predicted transcriptional regulators		CDS	helix-turn-helix family protein			
-	3058602	3059231	630	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	peg	gi|57116681|ref|NC_000962.2|_3059201_3058602		CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	2.7.8.5	CDS	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2.7.8.5	pgsA	
+	3059262	3059786	525	"Acetyltransferase, GNAT family"	peg	gi|57116681|ref|NC_000962.2|_3059262_3059786		N-acetylglutamate synthase (EC 2.3.1.1)	2.3.1.1	CDS	acetyltransferase family protein			
-	3059855	3062158	2304	Cell division protein FtsK	peg	gi|57116681|ref|NC_000962.2|_3062158_3059855		DNA segregation ATPase FtsK/SpoIIIE and related proteins		CDS	ftsK/SpoIIIE family protein			
+	3062505	3062819	315	Antibiotic biosynthesis monooxygenase	peg	gi|57116681|ref|NC_000962.2|_3062505_3062819		Uncharacterized conserved protein		CDS	antibiotic biosynthesis monooxygenase family protein			
+	3062816	3063634	819	Dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_3062816_3063634		oxidoreductase, SDR family		CDS	oxidoreductase, SDR family protein			
-	3064515	3066191	1677	Ribonuclease J2 (endoribonuclease in RNA processing)	peg	gi|57116681|ref|NC_000962.2|_3066191_3064515		Predicted hydrolase of the metallo-beta-lactamase superfamily		CDS	putative ribonuclease J Rv2752c			
+	3063638	3064528	891	O-Methyltransferase involved in polyketide biosynthesis	peg	gi|57116681|ref|NC_000962.2|_3063638_3064528		methyltransferase, putative, TIGR00027 family		CDS	methyltransferase, TIGR00027 family protein	2.1.1.-		
-	3066222	3067124	903	Dihydrodipicolinate synthase (EC 4.2.1.52)	peg	gi|57116681|ref|NC_000962.2|_3067124_3066222		dihydrodipicolinate synthase (EC 4.2.1.52)	4.2.1.52	CDS	dihydrodipicolinate synthase	4.2.1.52	dapA	
-	3067193	3067945	753	Thymidylate synthase thyX (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3067945_3067193		thymidylate synthase (FAD) (EC 2.1.1.148)	2.1.1.148	CDS	thymidylate synthase, flavin-dependent	2.1.1.148	thyX	
-	3068189	3068347	159							type I restriction-modification system specificity subunit S domain protein	3.1.21.3		
-	3068461	3070083	1623	"Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)"	peg	gi|57116681|ref|NC_000962.2|_3070083_3068461		Type I restriction-modification system methyltransferase subunit	2.1.1.72	CDS	N-6 DNA Methylase family protein			
-	3070170	3070586	417	"PilT protein, N-terminal"	peg	gi|57116681|ref|NC_000962.2|_3070586_3070170		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC21			
-	3070583	3070810	228	FIG00821100: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3070798_3070583		Transcription regulator of the Arc/MetJ class		CDS	antitoxin VapB21		vapB21	
-	3070875	3071270	396	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_3071270_3070875		Uncharacterized protein conserved in bacteria		CDS	putative ribonuclease VapC28			
-	3071267	3071536	270	FIG00820737: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3071536_3071267		Uncharacterized protein conserved in bacteria		CDS	rv0623-like transcription factor family protein			
-	3071546	3072640	1095	"Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)"	peg	gi|57116681|ref|NC_000962.2|_3072640_3071546		Restriction endonuclease S subunits		CDS	type I restriction modification DNA specificity domain protein			
-	3072637	3073056	420	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3073056_3072637		hypothetical protein		CDS	conserved hypothetical protein			
-	3073130	3073615	486	Dihydrofolate reductase (EC 1.5.1.3)	peg	gi|57116681|ref|NC_000962.2|_3073615_3073130		dihydrofolate reductase (EC 1.5.1.3)	1.5.1.3	CDS	dihydrofolate reductase	1.5.1.3	folA	
-	3073680	3074480	801	Thymidylate synthase (EC 2.1.1.45)	peg	gi|57116681|ref|NC_000962.2|_3074471_3073680		thymidylate synthase (EC 2.1.1.45)	2.1.1.45	CDS	thymidylate synthase	2.1.1.45	thyA	
+	3074636	3075373	738	Dienelactone hydrolase family	peg	gi|57116681|ref|NC_000962.2|_3074636_3075373		Dienelactone hydrolase and related enzymes	3.1.1.45	CDS	dienelactone hydrolase family protein			
-	3075588	3076370	783	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|57116681|ref|NC_000962.2|_3076370_3075588		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
-	3076367	3076546	180	hypothetical protein Rv2767c	peg	gi|57116681|ref|NC_000962.2|_3076546_3076367								
-	3076603	3076833	231	FIG00820771: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3076833_3076603					hypothetical protein			
-	3076894	3078078	1185	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3078036_3076894		PPE-repeat proteins		CDS	PPE family protein			
-	3078158	3078985	828	PE family protein	peg	gi|57116681|ref|NC_000962.2|_3078985_3078158		Polymorphic PE/PPE proteins C terminal./PE family.		CDS	PE family protein			
-	3079309	3080415	1107	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3080415_3079309		PPE-repeat proteins		CDS	PPE family protein			
-	3080581	3081033	453	Multimeric flavodoxin WrbA	peg	gi|57116681|ref|NC_000962.2|_3081033_3080581		NADPH-dependent FMN reductase.		CDS	NADPH-dependent FMN reductase family protein			
-	3081119	3081595	477	FIG00820747: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3081595_3081119		hypothetical protein		CDS	putative conserved membrane protein			
-	3081604	3082341	738	Dihydrodipicolinate reductase (EC 1.3.1.26)	peg	gi|57116681|ref|NC_000962.2|_3082341_3081604		dihydrodipicolinate reductase (EC 1.3.1.26)	1.3.1.26	CDS	dihydrodipicolinate reductase	1.3.1.26	dapB	
+	3082846	3083370	525	"Acetyltransferase, GNAT family"	peg	gi|57116681|ref|NC_000962.2|_3082846_3083370		Acetyltransferases		CDS	acetyltransferase family protein			
-	3083374	3084450	1077	Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)	peg	gi|57116681|ref|NC_000962.2|_3084450_3083374		Flavodoxin reductases (ferredoxin-NADPH reductases) family 1		CDS	2Fe-2S iron-sulfur cluster binding domain protein			
-	3084485	3085555	1071	FF domain protein	peg	gi|57116681|ref|NC_000962.2|_3085555_3084485		Predicted metal-dependent hydrolase		CDS	putative metal-dependent hydrolase family protein			
-	3085713	3086183	471	FIG00820821: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3086159_3085713		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
-	3086215	3086730	516	"Transcriptional regulator, AsnC family"	peg	gi|57116681|ref|NC_000962.2|_3086652_3086215		Transcriptional regulators		CDS	asnC family protein			
+	3086820	3087935	1116	Alanine dehydrogenase (EC 1.4.1.1)	peg	gi|57116681|ref|NC_000962.2|_3086820_3087935		alanine dehydrogenase	1.4.1.1	CDS	alanine dehydrogenase	1.4.1.1	ald	
-	3087950	3088984	1035	2-nitropropane dioxygenase (EC 1.13.11.32)	peg	gi|57116681|ref|NC_000962.2|_3088984_3087950		nitroalkane oxidase (EC 1.7.3.1)	1.13.12.16	CDS	putative 2-nitropropane dioxygenase			
-	3089045	3090361	1317	"FIG007959: peptidase, M16 family"	peg	gi|57116681|ref|NC_000962.2|_3090286_3089045		Predicted Zn-dependent peptidases		CDS	peptidase M16 inactive domain protein			
-	3090339	3092813	2475	Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	peg	gi|57116681|ref|NC_000962.2|_3092597_3090339		polyribonucleotide nucleotidyltransferase	2.7.7.8	CDS	polyribonucleotide nucleotidyltransferase	2.7.7.8	pnp	
-	3092951	3093466	516	Lipoprotein LppU	peg	gi|57116681|ref|NC_000962.2|_3093466_3092951		hypothetical protein		CDS	putative lipoprotein LppU			
-	3093479	3093748	270	SSU ribosomal protein S15p (S13e)	peg	gi|57116681|ref|NC_000962.2|_3093748_3093479		SSU ribosomal protein S15P		CDS	ribosomal protein S15		rpsO	
-	3093905	3094879	975	Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)	peg	gi|57116681|ref|NC_000962.2|_3094879_3093905		FMN adenylyltransferase (EC 2.7.7.2)/riboflavin kinase (EC 2.7.1.26)	2.7.1.26, 2.7.7.2	CDS	riboflavin biosynthesis protein RibF	2.7.1.26	ribF	
+	3095111	3096874	1764	ATPases involved in chromosome partitioning	peg	gi|57116681|ref|NC_000962.2|_3095138_3096874		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
+	3096959	3097645	687	Mn-dependent transcriptional regulator MntR	peg	gi|57116681|ref|NC_000962.2|_3096959_3097645		iron (metal) dependent repressor, DtxR family		CDS	iron dependent repressor, N-terminal DNA binding domain protein			
-	3097706	3098938	1233	acyl-CoA dehydrogenase FadE21	peg	gi|57116681|ref|NC_000962.2|_3098938_3097706		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
-	3098964	3100169	1206	3-ketoacyl-CoA thiolase (EC 2.3.1.16)	peg	gi|57116681|ref|NC_000962.2|_3100169_3098964		Acetyl-CoA acetyltransferase	2.3.1.16	CDS	thiolase, C-terminal domain protein			
-	3100202	3101581	1380	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3101581_3100202		Transposase and inactivated derivatives		CDS	putative transposase family protein			
-	3101581	3102162	582	Possible resolvase	peg	gi|57116681|ref|NC_000962.2|_3102162_3101581		Predicted site-specific integrase-resolvase		CDS	resolvase, N terminal domain protein			
-	3102364	3103260	897	tRNA pseudouridine synthase B (EC 4.2.1.70)	peg	gi|57116681|ref|NC_000962.2|_3103260_3102364		tRNA pseudouridine synthase B (EC 4.2.1.70)	5.4.99.25	CDS	tRNA pseudouridine(55) synthase	5.4.99.25	truB	
-	3103257	3103940	684	4'-phosphopantetheinyl transferase EntD (EC 2.7.8.-)	peg	gi|57116681|ref|NC_000962.2|_3103940_3103257		Phosphopantetheinyl transferase component of siderophore synthetase		CDS	4'-phosphopantetheinyl transferase superfamily protein			
-	3103937	3104911	975	putative SimX4 homolog	peg	gi|57116681|ref|NC_000962.2|_3104911_3103937		Predicted phosphohydrolases		CDS	calcineurin-like phosphoesterase family protein			
-	3105056	3105619	564	PROBABLE CONSERVED LIPOPROTEIN LPPV	peg	gi|57116681|ref|NC_000962.2|_3105619_3105056		hypothetical protein		CDS	putative conserved lipoprotein LppV			
-	3105619	3107307	1689	FIG00822807: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3107307_3105619		Alpha/beta hydrolase.		CDS	cutinase family protein			
-	3107311	3107637	327	FIG00821480: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3107637_3107311		hypothetical protein		CDS	conserved hypothetical protein			
+	3107810	3108397	588	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3107810_3108397		Protein of unknown function (DUF3558).		CDS	conserved hypothetical protein			
+	3108416	3110065	1650	Possible hydrolase	peg	gi|57116681|ref|NC_000962.2|_3108416_3110065		putative hydrolase, CocE/NonD family		CDS	hydrolase CocE/NonD family protein			
-	3110167	3110520	354	Programmed cell death toxin YdcE	peg	gi|57116681|ref|NC_000962.2|_3110520_3110167		Growth inhibitor	3.1.-	CDS	mRNA interferase MazF9	3.1.-.-	mazF9	
-	3110507	3110737	231	Programmed cell death antitoxin YdcD	peg	gi|57116681|ref|NC_000962.2|_3110725_3110507		hypothetical protein		CDS	antitoxin MazE9		mazE9	
-	3110780	3111796	1017	FIG00823567: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3111796_3110780		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	3111822	3112289	468	FIG00820757: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3111822_3112289		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3112465	3112722	258	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3112656_3112465		hypothetical protein		CDS	conserved hypothetical protein			
+	3112639	3112794	156	GCN5-related N-acetyltransferase; Histone acetyltransferase HPA2 and related acetyltransferases	peg	gi|57116681|ref|NC_000962.2|_3112639_3112794					conserved hypothetical protein			
+	3112840	3113271	432	FIG00821656: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3112840_3113271		hypothetical protein		CDS	conserved hypothetical protein			
-	3113417	3113578	162	FIG00822506: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3113578_3113417					hypothetical protein			
+	3113268	3113459	192	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3113268_3113459		hypothetical protein		CDS	putative membrane protein			
+	3113658	3114812	1155	Integrase core domain-containing protein	peg	gi|57116681|ref|NC_000962.2|_3113658_3114812		Integrase core domain.		CDS	integrase core domain protein			
+	3115088	3115303	216	FIG00822019: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3115088_3115303		hypothetical protein		CDS				
+	3115408	3115719	312	FIG00821734: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3115468_3115719		hypothetical protein		CDS	hypothetical protein			
-	3115741	3115908	168	COG3464: Transposase and inactivated derivatives	peg	gi|57116681|ref|NC_000962.2|_3115908_3115741					transposase family protein			
+	3116139	3116747	609	FIG00820260: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3116139_3116747		hypothetical protein		CDS	conserved hypothetical protein			
+	3116818	3118227	1410	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3116818_3118227		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	3118224	3119036	813	"Type II secretory pathway, component ExeA"	peg	gi|57116681|ref|NC_000962.2|_3118224_3119036		Type II secretory pathway, component ExeA (predicted ATPase)		CDS	AAA domain protein			
-	3120566	3121450	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3121450_3120566		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	3121501	3121827	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3121827_3121501		Transposase and inactivated derivatives		CDS	transposase family protein			
-	3123625	3123966	342	CRISPR-associated protein Cas2	peg	gi|57116681|ref|NC_000962.2|_3123966_3123625		CRISPR-associated protein, Cas2 family		CDS	CRISPR-associated endoribonuclease Cas2		cas2	
-	3123967	3124983	1017	CRISPR-associated protein Cas1	peg	gi|57116681|ref|NC_000962.2|_3124983_3123967		CRISPR-associated protein, Cas1 family		CDS	CRISPR-associated endonuclease Cas1	3.1.-.-	cas1	
-	3124996	3126243	1248	CRISPR-associated protein Csm6	peg	gi|57116681|ref|NC_000962.2|_3126243_3124996		CRISPR type III-A/MTUBE-associated protein Csm6		CDS	CRISPR-associated family protein			
-	3126240	3127367	1128	"CRISPR-associated protein, Csm5 family"	peg	gi|57116681|ref|NC_000962.2|_3127367_3126240		CRISPR-associated protein, Csm5 family		CDS	RAMP superfamily protein			
-	3127364	3128272	909	"CRISPR-associated RAMP protein, Csm4 family"	peg	gi|57116681|ref|NC_000962.2|_3128272_3127364		CRISPR-associated protein, Csm4 family		CDS	conserved hypothetical protein			
-	3128253	3128963	711	CRISPR-associated RAMP Csm3	peg	gi|57116681|ref|NC_000962.2|_3128963_3128253		CRISPR-associated protein, Csm3 family		CDS	RAMP superfamily protein			
-	3128973	3129347	375	"CRISPR-associated protein, Csm2 family"	peg	gi|57116681|ref|NC_000962.2|_3129347_3128973		CRISPR type III-A/MTUBE-associated protein Csm2		CDS	conserved hypothetical protein			
-	3129344	3131788	2445	"CRISPR-associated protein, Csm1 family"	peg	gi|57116681|ref|NC_000962.2|_3131773_3129344		CRISPR-associated protein, Csm1 family		CDS	csm1 family CRISPR-associated protein		csm1	
-	3131770	3132558	789	CRISPR repeat RNA endoribonuclease Cas6	peg	gi|57116681|ref|NC_000962.2|_3132456_3131770		CRISPR-associated protein, Cas6 family		CDS	CRISPR-associated endoribonuclease Cas6	3.1.-.-	cas6	
-	3132892	3133614	723	FIG00820705: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3133614_3132892		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3133709	3134593	885	FIG00821357: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3134593_3133709		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	3134596	3135483	888	FIG00820907: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3135480_3134596		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3135788	3136333	546	FIG00820705: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3136333_3135788		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3136330	3136599	270	COGs COG0840	peg	gi|57116681|ref|NC_000962.2|_3136599_3136330		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	3136620	3137012	393	FIG00824270: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3137012_3136620		Uncharacterized protein conserved in bacteria		CDS	ribonuclease VapC22	3.1.-.-	vapC22	
-	3137009	3137236	228	FIG00821747: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3137188_3137009		prevent-host-death family protein		CDS	antitoxin VapB22		vapB22	
+	3137271	3138020	750	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_3137271_3138020		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	echA16_2		echA16	
-	3138099	3139181	1083	"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)"	peg	gi|57116681|ref|NC_000962.2|_3139181_3138099		carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)	3.6.3.20	CDS	ABC transporter family protein			
-	3139174	3140484	1311	"Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)"	peg	gi|57116681|ref|NC_000962.2|_3140484_3139174		carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	bacterial extracellular solute-binding family protein			
-	3140487	3141272	786	"Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)"	peg	gi|57116681|ref|NC_000962.2|_3141272_3140487		carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
-	3141311	3142222	912	"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)"	peg	gi|57116681|ref|NC_000962.2|_3142177_3141311		carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
-	3142309	3143619	1311	putative DNA-damage-inducible protein F	peg	gi|57116681|ref|NC_000962.2|_3143619_3142309		putative efflux protein, MATE family		CDS	MATE efflux family protein			
-	3143635	3144645	1011	"FIG146085: 3'-to-5' oligoribonuclease A, Bacillus type"	peg	gi|57116681|ref|NC_000962.2|_3144645_3143635		Exopolyphosphatase-related proteins		CDS	DHHA1 domain protein			
-	3144620	3145171	552	Ribosome-binding factor A	peg	gi|57116681|ref|NC_000962.2|_3145171_3144620		ribosome-binding factor A		CDS	ribosome-binding factor A		rbfA	
-	3145171	3147873	2703	Translation initiation factor 2	peg	gi|57116681|ref|NC_000962.2|_3146979_3145171		bacterial translation initiation factor 2 (bIF-2)		CDS	translation initiation factor IF-2		infB	
+	3146965	3147771	807	FIG00820868: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3146965_3147771					putative translation initiation factor IF-2 infB			
-	3147959	3148225	267	COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination	peg	gi|57116681|ref|NC_000962.2|_3148225_3147959					conserved hypothetical protein			
-	3148385	3149428	1044	Transcription termination protein NusA	peg	gi|57116681|ref|NC_000962.2|_3149428_3148385		NusA antitermination factor		CDS	transcription elongation protein nusA		nusA	
-	3149425	3149976	552	FIG000325: clustered with transcription termination protein NusA	peg	gi|57116681|ref|NC_000962.2|_3149976_3149425		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	3150231	3150716	486	PROBABLE CONSERVED TRANSMEMBRANE ALANINE RICH PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3150231_3150716		hypothetical protein		CDS	putative conserved transmembrane alanine rich protein			
+	3150713	3151201	489	FIG00999285: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3150713_3151201		hypothetical protein		CDS	conserved hypothetical protein			
-	3151202	3153082	1881	prolyl-tRNA synthetase( EC:6.1.1.15 )	peg	gi|57116681|ref|NC_000962.2|_3152950_3151202		prolyl-tRNA synthetase (EC 6.1.1.15)	6.1.1.15	CDS	proline--tRNA ligase	6.1.1.15	proS	
-	3153039	3154631	1593	EmrB/QacA family drug resistance transporter	peg	gi|57116681|ref|NC_000962.2|_3154451_3153039		Arabinose efflux permease		CDS	sugar (and other) transporter family protein			
-	3154654	3155871	1218	Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	peg	gi|57116681|ref|NC_000962.2|_3155871_3154654		uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107)	4.99.1.4, 2.1.1.107, 1.3.1.76	CDS	uroporphyrinogen-III C-methyltransferase	2.1.1.107	cobA	
-	3156148	3157527	1380	"Cobyrinic acid A,C-diamide synthase"	peg	gi|57116681|ref|NC_000962.2|_3157527_3156148		hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) (EC 6.3.5.9)/cobyrinate a,c-diamide synthase (EC 6.3.5.11)	6.3.5.9, 6.3.5.11	CDS	cobyrinic acid a,c-diamide synthase	6.3.1.-	cobB	
-	3157521	3158144	624	Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	peg	gi|57116681|ref|NC_000962.2|_3158144_3157521		cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17)	2.5.1.17	CDS	cob(I)yrinic acid a,c-diamide adenosyltransferase	2.5.1.17	cobO	
-	3158165	3160054	1890	ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis	peg	gi|57116681|ref|NC_000962.2|_3160054_3158165		Mg-chelatase subunit ChlI	6.6.1.1	CDS	AAA domain family protein			
-	3160051	3160521	471	ElaA protein	peg	gi|57116681|ref|NC_000962.2|_3160521_3160051		Predicted acyltransferase		CDS	acetyltransferase domain protein			
-	3160580	3162061	1482	Malate:quinone oxidoreductase (EC 1.1.5.4)	peg	gi|57116681|ref|NC_000962.2|_3162061_3160580		malate:quinone-oxidoreductase	1.1.5.4	CDS	malate dehydrogenase	1.1.5.4	mqo	
+	3162268	3164115	1848	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3162268_3164115		PE family.		CDS	PE family protein			
+	3164152	3165192	1041	Lysophospholipase (EC 3.1.1.5)	peg	gi|57116681|ref|NC_000962.2|_3164164_3165192		Lysophospholipase		CDS	alpha/beta hydrolase family protein			
+	3165205	3166584	1380	NADPH-dependent mycothiol reductase Mtr	peg	gi|57116681|ref|NC_000962.2|_3165205_3166584		mycothione reductase	1.8.1.7	CDS	mycothione reductase	1.8.1.15	mtr	
+	3166684	3167802	1119	HoxN/HupN/NixA family nickel/cobalt transporter	peg	gi|57116681|ref|NC_000962.2|_3166684_3167802		high-affinity nickel-transporter, HoxN/HupN/NixA family		CDS	high-affinity nickel transport protein		hoxN	
+	3167868	3168200	333	[NiFe] hydrogenase nickel incorporation-associated protein HypB	peg	gi|57116681|ref|NC_000962.2|_3167868_3168200		Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase		CDS	cobW/HypB/UreG, nucleotide-binding domain protein			
+	3168212	3168427	216	[NiFe] hydrogenase nickel incorporation-associated protein HypB	peg	gi|57116681|ref|NC_000962.2|_3168212_3168427		Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase		CDS	cobW/HypB/UreG, nucleotide-binding domain protein			
-	3168583	3169356	774	Short-chain dehydrogenase/reductase in hypothetical Actinobacterial gene cluster	peg	gi|57116681|ref|NC_000962.2|_3169356_3168583		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
-	3169356	3170723	1368	Aldehyde dehydrogenase in hypothetical Actinobacterial gene cluster	peg	gi|57116681|ref|NC_000962.2|_3170723_3169356		NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	aldehyde dehydrogenase family protein			
-	3170720	3171520	801	COG2071: predicted glutamine amidotransferases in hypothetical Actinobacterial gene cluster	peg	gi|57116681|ref|NC_000962.2|_3171520_3170720		Predicted glutamine amidotransferases		CDS	glutamine amidotransferase class-I family protein			
-	3171627	3173000	1374	Glutamine synthetase family protein in hypothetical Actinobacterial gene cluster	peg	gi|57116681|ref|NC_000962.2|_3173000_3171627		L-glutamine synthetase (EC 6.3.1.2)	6.3.1.2	CDS	glutamine synthetase, catalytic domain protein			
-	3173160	3174017	858	Methionine aminopeptidase (EC 3.4.11.18)	peg	gi|57116681|ref|NC_000962.2|_3173987_3173160		methionine aminopeptidase, type I (EC 3.4.11.18)	3.4.11.18	CDS	methionine aminopeptidase, type I	3.4.11.18	map	
-	3174059	3174676	618	FIG020268: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3174676_3174059		Domain of unknown function (DUF1707).		CDS	conserved hypothetical protein			
+	3174801	3174995	195	FIG00825957: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3174801_3174995					putative antitoxin VapB23			
+	3174992	3175372	381	Putative uncharacterized protein BCG_2885	peg	gi|57116681|ref|NC_000962.2|_3174992_3175372		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
-	3175454	3177265	1812	Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	peg	gi|57116681|ref|NC_000962.2|_3177202_3175454		Cell division protein FtsI/penicillin-binding protein 2		CDS	penicillin binding transpeptidase domain protein			
+	3177537	3177818	282	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)	peg	gi|57116681|ref|NC_000962.2|_3177537_3177818		prevent-host-death family protein		CDS	antitoxin RelF		relF	
+	3177834	3178085	252	RelE/StbE replicon stabilization toxin	peg	gi|57116681|ref|NC_000962.2|_3177834_3178085		Cytotoxic translational repressor of toxin-antitoxin stability system		CDS	toxin RelG	3.1.-.-	relG	
-	3178458	3179312	855	"GCN5-related N-acetyltransferase, FIGfam019367"	peg	gi|57116681|ref|NC_000962.2|_3179270_3178458		Predicted acetyltransferase		CDS	acetyltransferase family protein			
-	3179368	3180531	1164	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	peg	gi|57116681|ref|NC_000962.2|_3180513_3179368		4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3)	1.17.7.1	CDS	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1.17.7.1	ispG	
-	3180548	3181762	1215	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3181762_3180548		Predicted membrane-associated Zn-dependent proteases 1		CDS	peptidase M50 family protein			
-	3181770	3183059	1290	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	peg	gi|57116681|ref|NC_000962.2|_3183059_3181770		1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	1.1.1.267	CDS	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267	dxr	
+	3183138	3183395	258	FIG00823326: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3183138_3183395					antitoxin VapB43		vapB43	
+	3183382	3183825	444	FIG00821346: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3183382_3183825		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC43			
+	3183848	3184567	720	Immunogenic protein Mpt70	peg	gi|57116681|ref|NC_000962.2|_3183848_3184567		Secreted and surface protein containing fasciclin-like repeats		CDS	immunogenic protein MPB70		mpb70	
+	3184663	3184854	192	FIG00822496: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3184663_3184854		prevent-host-death family protein		CDS	putative antitoxin VapB5			
+	3184905	3185072	168	FIG00823410: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3184905_3185072					dipZ domain protein		dipZ	
+	3185186	3186934	1749	DipZ protein	peg	gi|57116681|ref|NC_000962.2|_3185186_3186934		Cytochrome c biogenesis protein		CDS	protein dipZ		dipZ	
+	3187030	3187611	582	Immunogenic protein Mpt70	peg	gi|57116681|ref|NC_000962.2|_3187030_3187611		Secreted and surface protein containing fasciclin-like repeats		CDS	immunogenic protein MPB70		mpb70	
+	3187663	3187977	315	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3187663_3187977		Protein of unknown function (DUF2631).		CDS	conserved hypothetical protein			
-	3188008	3188871	864	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	peg	gi|57116681|ref|NC_000962.2|_3188871_3188008		Cytochrome c biogenesis protein		CDS	cytochrome C biogenesis transmembrane region family protein			
-	3188876	3189397	522	Soluble secreted antigen MPT53 precursor	peg	gi|57116681|ref|NC_000962.2|_3189397_3188876		Peroxiredoxin		CDS	soluble secreted antigen MPT53		mpt53	
-	3189583	3190170	588	Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3189861_3189583		hypothetical protein	2.1.1.192	CDS	conserved hypothetical protein			
-	3189851	3190678	828	Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3190678_3189851					putative 23S rRNA methyltransferase			
-	3190701	3191621	921	Phosphatidate cytidylyltransferase (EC 2.7.7.41)	peg	gi|57116681|ref|NC_000962.2|_3191621_3190701		CDP-diglyceride synthetase	2.7.7.41	CDS	cytidylyltransferase family protein			
-	3191644	3192201	558	Ribosome recycling factor	peg	gi|57116681|ref|NC_000962.2|_3192201_3191644		ribosome recycling factor		CDS	ribosome recycling factor		frr	
-	3192373	3193158	786	Uridylate kinase (EC 2.7.4.-)	peg	gi|57116681|ref|NC_000962.2|_3193158_3192373		uridylate kinase (EC 2.7.4.22)	2.7.4.22	CDS	UMP kinase	2.7.4.22	pyrH	
+	3193450	3194151	702	Transcriptional regulatory protein glnR	peg	gi|57116681|ref|NC_000962.2|_3193450_3194151		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory , C terminal family protein			
-	3194166	3195545	1380	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3195512_3194166		Transposase and inactivated derivatives		CDS	putative transposase family protein			
-	3195545	3196132	588	Resolvase	peg	gi|57116681|ref|NC_000962.2|_3196132_3195545		Predicted site-specific integrase-resolvase		CDS	resolvase, N terminal domain protein			
+	3196431	3196850	420	"Transcriptional regulator, MarR family"	peg	gi|57116681|ref|NC_000962.2|_3196431_3196850		Transcriptional regulators		CDS	marR family protein			
-	3196864	3198285	1422	Putative amidase amiC (EC 3.5.1.4)	peg	gi|57116681|ref|NC_000962.2|_3198285_3196864		Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	amidase family protein			
-	3198292	3199107	816	Translation elongation factor Ts	peg	gi|57116681|ref|NC_000962.2|_3199107_3198292		translation elongation factor Ts (EF-Ts)		CDS	translation elongation factor Ts		tsf	
-	3199119	3199982	864	SSU ribosomal protein S2p (SAe)	peg	gi|57116681|ref|NC_000962.2|_3199967_3199119		SSU ribosomal protein S2P		CDS	ribosomal protein S2		rpsB	
-	3200156	3200776	621	FIG00821596: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3200299_3200156		hypothetical protein		CDS	conserved hypothetical protein			
-	3200794	3202020	1227	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3202008_3200794		PPE-repeat proteins		CDS	PPE family protein			
-	3203394	3204341	948	Tyrosine recombinase XerC	peg	gi|57116681|ref|NC_000962.2|_3204290_3203394		tyrosine recombinase XerC subunit		CDS	phage integrase family protein			
+	3202420	3203397	978	POSSIBLE OXIDOREDUCTASE (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_3202420_3203397		probable F420-dependent oxidoreductase, MSMEG_2516 family		CDS	putative F420-dependent oxidoreductase, MSMEG_2516 family protein			
-	3204381	3205232	852	Iron utilization protein	peg	gi|57116681|ref|NC_000962.2|_3205232_3204381		Siderophore-interacting protein		CDS	siderophore-interacting FAD-binding domain protein			
-	3205265	3206434	1170	Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	peg	gi|57116681|ref|NC_000962.2|_3206434_3205265		DNA protecting protein DprA		CDS	DNA protecting protein DprA		dprA	
-	3206431	3207942	1512	MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein	peg	gi|57116681|ref|NC_000962.2|_3207942_3206431		Mg chelatase-related protein		CDS	sigma-54 interaction domain protein			
-	3207942	3208367	426	Predicted endonuclease distantly related to archaeal Holliday junction resolvase	peg	gi|57116681|ref|NC_000962.2|_3208367_3207942		TIGR00252 family protein		CDS	conserved hypothetical protein			
-	3208576	3209406	831	Formate dehydrogenase chain D (EC 1.2.1.2)	peg	gi|57116681|ref|NC_000962.2|_3209406_3208576		formate dehydrogenase family accessory protein FdhD		CDS	formate dehydrogenase family accessory protein FdhD			
-	3209406	3211745	2340	Putative formate dehydrogenase oxidoreductase protein	peg	gi|57116681|ref|NC_000962.2|_3211745_3209406		oxidoreductase alpha (molybdopterin) subunit		CDS	molydopterin dinucleotide binding domain protein			
-	3211803	3212108	306	Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII	peg	gi|57116681|ref|NC_000962.2|_3212108_3211803		Protein of unknown function (DUF2469).		CDS	conserved hypothetical protein			
-	3212162	3212956	795	Ribonuclease HII (EC 3.1.26.4)	peg	gi|57116681|ref|NC_000962.2|_3212956_3212162		RNase HII (EC 3.1.26.4)	3.1.26.4	CDS	ribonuclease HII family protein			
-	3212970	3213854	885	Signal peptidase I (EC 3.4.21.89)	peg	gi|57116681|ref|NC_000962.2|_3213854_3212970		signal peptidase I (EC:3.4.21.89). Serine peptidase. MEROPS family S26A	3.4.21.89	CDS	signal peptidase I	3.4.21.89	lepB	
-	3213912	3214253	342	LSU ribosomal protein L19p	peg	gi|57116681|ref|NC_000962.2|_3214253_3213912		LSU ribosomal protein L19P		CDS	ribosomal protein L19		rplS	
+	3214628	3215572	945	Putative lipoprotein lppW precursor	peg	gi|57116681|ref|NC_000962.2|_3214628_3215572		hypothetical protein		CDS	putative lipoprotein lppW			
-	3215665	3216357	693	tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	peg	gi|57116681|ref|NC_000962.2|_3216357_3215665		tRNA (Guanine37-N(1)-) methyltransferase (EC 2.1.1.31)		CDS	tRNA (guanine(37)-N(1))-methyltransferase		trmD	
-	3216361	3216891	531	16S rRNA processing protein RimM	peg	gi|57116681|ref|NC_000962.2|_3216891_3216361		16S rRNA processing protein RimM		CDS	16S rRNA processing protein RimM		rimM	
-	3216905	3217147	243	KH domain RNA binding protein YlqC	peg	gi|57116681|ref|NC_000962.2|_3217147_3216905		Predicted RNA-binding protein (contains KH domain)		CDS	conserved hypothetical protein			
-	3217155	3217643	489	SSU ribosomal protein S16p	peg	gi|57116681|ref|NC_000962.2|_3217643_3217155		SSU ribosomal protein S16P		CDS	ribosomal protein S16		rpsP	
-	3217827	3218246	420	FIG00821456: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3218246_3217827		SnoaL-like domain.		CDS	lumazine-binding family protein			
+	3218339	3219214	876	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg	gi|57116681|ref|NC_000962.2|_3218351_3219214		D-alanyl-D-alanine carboxypeptidase	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase family protein			
-	3219274	3219861	588	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3219861_3219274		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	3219863	3221698	1836	N-acyl-D-glutamate amidohydrolase	peg	gi|57116681|ref|NC_000962.2|_3221698_3219863		N-acyl-D-aspartate/D-glutamate deacylase		CDS	amidohydrolase family protein			
-	3221767	3223524	1758	Transmembrane serine/threonine-protein kinase I PknI (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_3223524_3221767		Protein kinase domain.	2.7.11.1	CDS	serine/threonine-protein kinase pknF	2.7.11.1	pknF	
-	3223568	3224680	1113	"Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)"	peg	gi|57116681|ref|NC_000962.2|_3224680_3223568		Pro-Hyp dipeptidase. Metallo peptidase. MEROPS family M38		CDS	amidohydrolase family protein			
-	3224708	3226285	1578	"Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)"	peg	gi|57116681|ref|NC_000962.2|_3226285_3224708		signal recognition particle subunit FFH/SRP54 (srp54)		CDS	signal recognition particle protein		ffh	
+	3226435	3228243	1809	DNA or RNA helicase of superfamily protein II	peg	gi|57116681|ref|NC_000962.2|_3226435_3228243		DNA or RNA helicases of superfamily II		CDS	DEAD/DEAH box helicase family protein			
-	3228254	3230680	2427	[Protein-PII] uridylyltransferase (EC 2.7.7.59)	peg	gi|57116681|ref|NC_000962.2|_3230680_3228254		UTP--GlnB (protein PII) uridylyltransferase, GlnD	2.7.7.59	CDS	protein-P-II uridylyltransferase	2.7.7.59	glnD	
-	3230738	3231076	339	Nitrogen regulatory protein P-II	peg	gi|57116681|ref|NC_000962.2|_3231076_3230738		nitrogen regulatory protein P-II family		CDS	nitrogen regulatory protein P-II		glnB	
-	3231073	3232506	1434	Ammonium transporter	peg	gi|57116681|ref|NC_000962.2|_3232506_3231073		ammonium transporter (TC 1.A.11)		CDS	ammonium transporter family protein		amt	
-	3232871	3234139	1269	Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_3234139_3232871		signal recognition particle-docking protein FtsY		CDS	signal recognition particle-docking protein FtsY		ftsY	
-	3234189	3237806	3618	Chromosome partition protein smc	peg	gi|57116681|ref|NC_000962.2|_3237806_3234189		condensin subunit Smc		CDS	chromosome segregation protein SMC		smc	
-	3237818	3238099	282	"Acylphosphate phosphohydrolase (EC 3.6.1.7), putative"	peg	gi|57116681|ref|NC_000962.2|_3238099_3237818		Acylphosphatases	3.6.1.7	CDS	acylphosphatase family protein			
-	3238086	3238499	414	FIG00997866: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3238499_3238086		Predicted redox protein, regulator of disulfide bond formation		CDS	osmC-like family protein			
-	3238601	3239470	870	Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	peg	gi|57116681|ref|NC_000962.2|_3239470_3238601		formamidopyrimidine-DNA glycosylase (fpg)	4.2.99.18, 3.2.2.23	CDS	formamidopyrimidine-DNA glycosylase	3.2.2.23	mutM	
-	3239829	3240551	723	Ribonuclease III (EC 3.1.26.3)	peg	gi|57116681|ref|NC_000962.2|_3240551_3239829		RNAse III (EC 3.1.26.3)	3.1.26.3	CDS	ribonuclease III	3.1.26.3	rnc	
-	3240548	3241135	588	"COG1399 protein, clustered with ribosomal protein L32p"	peg	gi|57116681|ref|NC_000962.2|_3241135_3240548		Predicted metal-binding, possibly nucleic acid-binding protein		CDS	conserved hypothetical protein			
-	3241222	3241965	744	Cell division initiation protein	peg	gi|57116681|ref|NC_000962.2|_3241965_3241222		Cell division initiation protein		CDS	ATP synthase B/B' CF family protein			
+	3242198	3242983	786	Thioesterase TesA	peg	gi|57116681|ref|NC_000962.2|_3242198_3242983		Predicted thioesterase involved in non-ribosomal peptide biosynthesis		CDS	alpha/beta hydrolase fold family protein			
+	3243568	3245448	1881	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_3243568_3245448		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	long-chain-fatty-acid--AMP ligase FadD26	6.2.1.-	fadD26	
+	3245445	3251075	5631	Phenolpthiocerol synthesis polyketide synthase ppsA	peg	gi|57116681|ref|NC_000962.2|_3245445_3251075		Polyketide synthase modules and related proteins		CDS	phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA	2.3.1.41	ppsA	
+	3251072	3255688	4617	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	peg	gi|57116681|ref|NC_000962.2|_3251072_3255688		Polyketide synthase modules and related proteins		CDS	phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsB	2.3.1.41	ppsB	
+	3255685	3262251	6567	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	peg	gi|57116681|ref|NC_000962.2|_3255685_3262251		Polyketide synthase modules and related proteins		CDS	phthiocerol synthesis polyketide synthase type I PpsC	2.3.1.41	ppsC	
+	3262248	3267731	5484	PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSD	peg	gi|57116681|ref|NC_000962.2|_3262248_3267731		Polyketide synthase modules and related proteins		CDS	phthiocerol synthesis polyketide synthase type I PpsC	2.3.1.41	ppsC	
+	3267737	3272203	4467	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	peg	gi|57116681|ref|NC_000962.2|_3267737_3272203		Polyketide synthase modules and related proteins		CDS	phthiocerol synthesis polyketide synthase type I PpsE	2.3.1.41	ppsE	
+	3272214	3273209	996	Daunorubicin-DIM-transport ATP-binding protein ABC transporter DrrA	peg	gi|57116681|ref|NC_000962.2|_3272214_3273209		daunorubicin resistance ABC transporter ATP-binding subunit		CDS	doxorubicin resistance ATP-binding protein DrrA	3.6.3.-	drrA	
+	3273206	3274075	870	Daunorubicin-DIM-transport integral membrane protein ABC transporter DrrB	peg	gi|57116681|ref|NC_000962.2|_3273299_3274075		ABC transporter efflux protein, DrrB family		CDS	doxorubicin resistance ABC transporter permease protein drrB		drrB	
+	3274072	3274902	831	Daunorubicin-DIM-transport integral membrane protein ABC transporter DrrC	peg	gi|57116681|ref|NC_000962.2|_3274165_3274902		daunorubicin resistance protein C		CDS	daunorubicin resistance C family protein			
+	3274949	3276217	1269	Putative conserved polyketide synthase-associated protein PapA5	peg	gi|57116681|ref|NC_000962.2|_3274964_3276217		Condensation domain.		CDS	condensation domain protein			
-	3276380	3282715	6336	putative mycocerosic synthase	peg	gi|57116681|ref|NC_000962.2|_3282715_3276380		Polyketide synthase modules and related proteins		CDS	mycocerosic acid synthase	2.3.1.111	mas	
+	3283215	3285077	1863	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_3283410_3285077		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	long-chain-fatty-acid--AMP ligase FadD28	6.2.1.-	fadD28	
+	3285031	3287832	2802	Putative membrane protein MmpL7	peg	gi|57116681|ref|NC_000962.2|_3285115_3287832		Predicted drug exporters of the RND superfamily		CDS	MMPL family protein			
-	3288026	3288196	171	FIG00822453: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3288196_3288026					conserved hypothetical protein			
+	3288464	3289705	1242	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3288464_3289705		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	3289879	3290064	186				hypothetical protein		CDS				
+	3290123	3290506	384	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3290123_3290506		DNA replication protein		CDS	istB-like ATP binding family protein			
-	3290624	3291325	702	Putative lipoprotein LppX precursor	peg	gi|57116681|ref|NC_000962.2|_3291304_3290624		Protein of unknown function (DUF1396).		CDS	putative lipoprotein lppX			
-	3291503	3296353	4851	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	peg	gi|57116681|ref|NC_000962.2|_3296353_3291503		KR domain./Alcohol dehydrogenase GroES-like domain./Acyl transferase domain./Zinc-binding dehydrogenase./Phosphopantetheine attachment site.		CDS	phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	
-	3296350	3297819	1470	"(MTCY24G1.02), len: 496 aa, Probable polyketide synthase, almost identical to G560508 PKS002B (495 aa), fasta scores, opt: 3270, E(): 0, (99.6% identity in 496 aa overlap); contains PS00606 Beta-ketoacyl synthases active site; similar to MTCY338.20 (49.9% identity in 465 aa overlap) and MTCY24G1.09 (50.2% identity in 454 aa overlap) and MTCY22H8.03 (47.6% identity in 437 aa overlap)"	peg	gi|57116681|ref|NC_000962.2|_3297819_3296350		Beta-ketoacyl synthase, C-terminal domain.		CDS	beta-ketoacyl synthase, C-terminal domain protein			
-	3297837	3299954	2118	COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	peg	gi|57116681|ref|NC_000962.2|_3299954_3297837		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	p-hydroxybenzoic acid--AMP ligase FadD22	6.2.1.-	fadD22	
-	3299971	3300570	600				chorismate lyase (EC 4.1.3.40)		CDS				
-	3300596	3302455	1860	"Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD29"	peg	gi|57116681|ref|NC_000962.2|_3302455_3300596		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	long-chain-fatty-acid--AMP ligase FadD29	6.2.1.-	fadD29	
+	3302615	3302932	318	FIG00820720: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3302615_3302932								
-	3303103	3304248	1146	Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase	peg	gi|57116681|ref|NC_000962.2|_3304212_3303103		Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases	1.2.-	CDS	luciferase-like monooxygenase family protein			
+	3304441	3305253	813	Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase	peg	gi|57116681|ref|NC_000962.2|_3304525_3305253		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	ubiE/COQ5 methyltransferase family protein			
+	3305279	3306535	1257	Trans-acting enoyl reductase	peg	gi|57116681|ref|NC_000962.2|_3305279_3306535		Uncharacterized conserved protein	1.3.1.-	CDS	putative trans-acting enoyl reductase Rv2449c			
-	3306666	3307391	726	FIG00821261: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3307376_3306666		Dimethyladenosine transferase (rRNA methylation)		CDS	methyltransferase domain protein			
+	3307350	3307559	210	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3307350_3307559								
-	3307580	3308545	966	"methyltransferase, FkbM family domain protein"	peg	gi|57116681|ref|NC_000962.2|_3308545_3307580		methyltransferase, FkbM family		CDS	methyltransferase, FkbM family domain protein			
+	3308668	3309399	732	gsc	peg	gi|57116681|ref|NC_000962.2|_3309127_3309399		methyltransferase, FkbM family		CDS	methyltransferase FkbM domain protein			
+	3309470	3310297	828	PGL/p-HBAD biosynthesis glycosyltransferase	peg	gi|57116681|ref|NC_000962.2|_3309527_3310297		Glycosyltransferases involved in cell wall biogenesis		CDS	glycosyl transferase 2 family protein			
-	3310445	3310651	207	FIG00822491: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3310651_3310445					putative predicted protein			
-	3310714	3312000	1287	UDP-glucoronosyl and UDP-glucosyltransferases family protein	peg	gi|57116681|ref|NC_000962.2|_3312000_3310714		Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	PGL/p-HBAD biosynthesis glycosyltransferase Rv2958c/MT3034	2.4.1.-		
-	3312101	3312838	738	POSSIBLE METHYLTRANSFERASE (METHYLASE)	peg	gi|57116681|ref|NC_000962.2|_3312670_3312101		Cephalosporin hydroxylase		CDS	cephalosporin hydroxylase family protein			
+	3313283	3313672	390	PROBABLE TRANSPOSASE	peg	gi|57116681|ref|NC_000962.2|_3313283_3313672		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
-	3313773	3315122	1350	PGL/p-HBAD biosynthesis rhamnosyltransferase	peg	gi|57116681|ref|NC_000962.2|_3314969_3313773		Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	PGL/p-HBAD biosynthesis glycosyltransferase Rv2958c/MT3034	2.4.1.-		
+	3315236	3316456	1221	PROBABLE INTEGRAL MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3315263_3316456		Predicted permeases		CDS	putative permease family protein			
+	3316529	3317461	933	Formyltetrahydrofolate deformylase (EC 3.5.1.10)	peg	gi|57116681|ref|NC_000962.2|_3316544_3317461		formyltetrahydrofolate deformylase (EC 3.5.1.10)	3.5.1.10	CDS	formyltetrahydrofolate deformylase	3.5.1.10	purU	
+	3318101	3318286	186	FIG00820984: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3318101_3318286		hypothetical protein		CDS	conserved hypothetical protein			
-	3318330	3318815	486	Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	peg	gi|57116681|ref|NC_000962.2|_3318815_3318330		Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	2.7.7.3	CDS	pantetheine-phosphate adenylyltransferase	2.7.7.3	coaD	
-	3318901	3319467	567	16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) ## SSU rRNA m(2)G966	peg	gi|57116681|ref|NC_000962.2|_3319467_3318901		RNA methyltransferase, RsmD family		CDS	RNA methyltransferase, RsmD family	2.1.1.-		
-	3319663	3323046	3384	Pyruvate carboxyl transferase (EC 6.4.1.1)	peg	gi|57116681|ref|NC_000962.2|_3323046_3319663		pyruvate carboxylase	6.4.1.1	CDS	pyruvate carboxylase	6.4.1.1	pyc	
-	3323071	3323703	633	Putative ESX-1 secretion system component Rv3877	peg	gi|57116681|ref|NC_000962.2|_3323700_3323071		Predicted membrane protein		CDS	vitamin K epoxide reductase family protein			
-	3323709	3324476	768	POSSIBLE CONSERVED MEMBRANE OR SECRETED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3324476_3323709		Protein-disulfide isomerase		CDS	thioredoxin family protein			
-	3324573	3325703	1131	lipase-esterase (lipN)	peg	gi|57116681|ref|NC_000962.2|_3325631_3324573		Esterase/lipase	3.1.1.-	CDS	alpha/beta hydrolase fold family protein			
+	3326101	3326949	849	"putative oxidoreductase( EC:1.-,EC:1.1.1.274 )"	peg	gi|57116681|ref|NC_000962.2|_3326101_3326949		Aldo/keto reductases, related to diketogulonate reductase		CDS	conserved hypothetical protein			
-	3327023	3327736	714	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3327736_3327023		Protein of unknown function (DUF1524).		CDS	conserved hypothetical protein			
-	3327733	3329946	2214	ATP-dependent DNA helicase RecG (EC 3.6.1.-)	peg	gi|57116681|ref|NC_000962.2|_3329946_3327733		ATP-dependent DNA helicase RecG (EC 3.6.1.-)	3.6.4.12	CDS	ATP-dependent DNA helicase RecG	3.6.4.12	recG	
-	3329949	3331361	1413	Dihydroxyacetone kinase family protein	peg	gi|57116681|ref|NC_000962.2|_3331361_3329949		DAK2 domain fusion protein YloV		CDS	dihydroxyacetone kinase family protein			
-	3331358	3331612	255	Dihydroxyacetone kinase family protein	peg	gi|57116681|ref|NC_000962.2|_3331612_3331358		hypothetical protein		CDS	conserved hypothetical protein			
+	3331854	3332048	195	LSU ribosomal protein L28p	peg	gi|57116681|ref|NC_000962.2|_3331854_3332048		ribosomal protein L28		CDS	ribosomal protein L28		rpmB	
-	3332071	3332754	684	"Uracil-DNA glycosylase, family 1"	peg	gi|57116681|ref|NC_000962.2|_3332754_3332071		Uracil-DNA glycosylase (EC 3.2.2.-)	3.2.2.27	CDS	uracil-DNA glycosylase	3.2.2.27	ung	
-	3332787	3333788	1002	Thiamine-monophosphate kinase (EC 2.7.4.16)	peg	gi|57116681|ref|NC_000962.2|_3333788_3332787		thiamine-phosphate kinase	2.7.4.16	CDS	thiamine-monophosphate kinase	2.7.4.16	thiL	
-	3333785	3335164	1380	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3335164_3333785		Transposase and inactivated derivatives		CDS	putative transposase family protein			
-	3335164	3335748	585	Resolvase	peg	gi|57116681|ref|NC_000962.2|_3335748_3335164		Predicted site-specific integrase-resolvase		CDS	resolvase, N terminal domain protein			
+	3335930	3336505	576	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3335930_3336505		Protein of unknown function (DUF3515).		CDS	conserved hypothetical protein			
-	3336796	3337917	1122	D-alanine--D-alanine ligase (EC 6.3.2.4)	peg	gi|57116681|ref|NC_000962.2|_3337917_3336796		D-alanine--D-alanine ligase (EC 6.3.2.4)	6.3.2.4	CDS	D-alanine--D-alanine ligase	6.3.2.4	ddl	
-	3337995	3339005	1011	Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	peg	gi|57116681|ref|NC_000962.2|_3339005_3337995		glycerol 3-phosphate dehydrogenase (NAD(P)+) (EC 1.1.1.94)	1.1.1.94	CDS	NAD-dependent glycerol-3-phosphate dehydrogenase family protein			
+	3339091	3339762	672	2-phospho-L-lactate guanylyltransferase (EC 2.7.7.68)	peg	gi|57116681|ref|NC_000962.2|_3339091_3339762		2-phospho-L-lactate guanylyltransferase	2.7.7.68	CDS	2-phospho-L-lactate guanylyltransferase	2.7.7.68	cofC	
+	3339854	3342082	2229	Polyphosphate kinase (EC 2.7.4.1)	peg	gi|57116681|ref|NC_000962.2|_3339854_3342082		polyphosphate kinase 1	2.7.4.1	CDS	polyphosphate kinase 1	2.7.4.1	ppk1	
+	3342165	3343118	954	Possible hydrolase mutT1 (EC 3.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_3342165_3343118		ADP-ribose pyrophosphatase		CDS	NUDIX domain protein			
-	3343176	3343820	645	"DNA-binding protein HU / low-complexity, AKP-rich domain"	peg	gi|57116681|ref|NC_000962.2|_3343820_3343176		bacterial nucleoid protein Hbs		CDS	conserved hypothetical protein			
-	3344033	3344629	597	3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	peg	gi|57116681|ref|NC_000962.2|_3344629_3344033		3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33)	4.2.1.35, 4.2.1.33	CDS	3-isopropylmalate dehydratase small subunit	4.2.1.33	leuD	
-	3344654	3346075	1422	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	peg	gi|57116681|ref|NC_000962.2|_3346075_3344654		3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33)	4.2.1.35, 4.2.1.33	CDS	3-isopropylmalate dehydratase, large subunit	4.2.1.33	leuC	
+	3346147	3346848	702	"Transcriptional regulator, IclR family"	peg	gi|57116681|ref|NC_000962.2|_3346147_3346848		transcriptional regulator, IclR family		CDS	bacterial transcriptional regulator family protein			
-	3346859	3347719	861	Putative uncharacterized protein BCG_3011c	peg	gi|57116681|ref|NC_000962.2|_3347713_3346859		hypothetical protein		CDS	conserved hypothetical protein			
+	3347667	3347819	153	FIG00822238: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3347667_3347819								
+	3347982	3348473	492	FIG00820161: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3347982_3348473		PPOX class probable F420-dependent enzyme		CDS	PPOX class putative F420-dependent enzyme family protein			
-	3348805	3350277	1473	Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	peg	gi|57116681|ref|NC_000962.2|_3350277_3348805		glutamyl-tRNA synthetase (EC 6.1.1.17)	6.1.1.17	CDS	glutamate--tRNA ligase	6.1.1.17	gltX	
-	3350274	3351119	846	"2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)"	peg	gi|57116681|ref|NC_000962.2|_3351119_3350274		2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)		CDS	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase			
-	3352458	3353486	1029	3-isopropylmalate dehydrogenase (EC 1.1.1.85)	peg	gi|57116681|ref|NC_000962.2|_3353486_3352458		3-isopropylmalate dehydrogenase (EC 1.1.1.85)	1.1.1.85	CDS	3-isopropylmalate dehydrogenase	1.1.1.85	leuB	
+	3351311	3352606	1296				Sugar phosphate permease		CDS				
-	3353483	3355069	1587	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	peg	gi|57116681|ref|NC_000962.2|_3355069_3353483		D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	1.1.1.95	CDS	phosphoglycerate dehydrogenase	1.1.1.95	serA	
+	3355099	3356541	1443	Phytoene dehydrogenase and related proteins	peg	gi|57116681|ref|NC_000962.2|_3355099_3356541		Phytoene dehydrogenase and related proteins		CDS	NAD(P)-binding Rossmann-like domain protein			
+	3356815	3357276	462	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3357067_3357276		hypothetical protein		CDS	conserved hypothetical protein			
+	3357252	3357554	303	FIG00820572: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3357252_3357554		hypothetical protein		CDS	conserved hypothetical protein			
+	3357602	3358567	966	Putative lipoprotein LppY	peg	gi|57116681|ref|NC_000962.2|_3357602_3358567		Domain of Unknown Function (DUF1259).		CDS	conserved hypothetical protein			
+	3358612	3359271	660	YbbM seven transmembrane helix protein	peg	gi|57116681|ref|NC_000962.2|_3358612_3359271		ABC-type uncharacterized transport system, permease component		CDS	conserved hypothetical protein			
-	3359585	3360598	1014	Ketol-acid reductoisomerase (EC 1.1.1.86)	peg	gi|57116681|ref|NC_000962.2|_3360598_3359585		ketol-acid reductoisomerase (EC 1.1.1.86)	1.1.1.86	CDS	ketol-acid reductoisomerase	1.1.1.86	ilvC	
-	3360624	3361130	507	Acetolactate synthase small subunit (EC 2.2.1.6)	peg	gi|57116681|ref|NC_000962.2|_3361130_3360624		acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6	CDS	acetolactate synthase, small subunit	2.2.1.6	ilvN	
-	3361130	3362986	1857	Acetolactate synthase large subunit (EC 2.2.1.6)	peg	gi|57116681|ref|NC_000962.2|_3362986_3361130		acetolactate synthase, large subunit (EC 2.2.1.6)	2.2.1.6	CDS	acetolactate synthase, large subunit, biosynthetic type	2.2.1.6	ilvB	
+	3363309	3363686	378	Low molecular weight protein antigen 6	peg	gi|57116681|ref|NC_000962.2|_3363309_3363686		Protein of unknown function (DUF2581).		CDS	low molecular weight protein antigen 6		cfp6	
-	3363693	3364478	786	"Membrane protein 2, distant similarity to thiosulphate:quinone oxidoreductase DoxD"	peg	gi|57116681|ref|NC_000962.2|_3364478_3363693		Predicted membrane protein		CDS	doxX family protein			
+	3364556	3365830	1275	"Glucose/sorbosone dehydrogenase, lipoprotein LppZ"	peg	gi|57116681|ref|NC_000962.2|_3364556_3365830		Glucose/sorbosone dehydrogenases		CDS	glucose / Sorbosone dehydrogenase family protein			
-	3365836	3366546	711	Oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_3366546_3365836		Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	flavin reductase like domain protein			
-	3367264	3368793	1530	Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)	peg	gi|57116681|ref|NC_000962.2|_3368793_3367264		aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-)	6.3.5.7, 6.3.5.6	CDS	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit	6.3.5.-	gatB	
+	3366689	3367267	579	FIG00820079: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3366689_3367267		Uncharacterized membrane protein		CDS	conserved hypothetical protein			
-	3368823	3369854	1032	6-phosphofructokinase (EC 2.7.1.11)	peg	gi|57116681|ref|NC_000962.2|_3369854_3368823		6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11	CDS	6-phosphofructokinase	2.7.1.11	pfkA	
-	3369950	3371434	1485	Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)	peg	gi|57116681|ref|NC_000962.2|_3371434_3369950		aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC 6.3.5.-)	6.3.5.6, 6.3.5.7	CDS	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit	6.3.5.-	gatA	
-	3371431	3371730	300	Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)	peg	gi|57116681|ref|NC_000962.2|_3371730_3371431		aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC 6.3.5.-)	6.3.5.7, 6.3.5.6	CDS	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit	6.3.5.-	gatC	
+	3371806	3372471	666	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3371806_3372471		hypothetical protein		CDS	conserved hypothetical protein			
-	3372545	3374620	2076	DNA ligase (EC 6.5.1.2)	peg	gi|57116681|ref|NC_000962.2|_3374620_3372545		DNA ligase, NAD-dependent	6.5.1.2	CDS	DNA ligase, NAD-dependent	6.5.1.2	ligA	
-	3374651	3375664	1014	vitamin-B12 independent methionine synthase family protein	peg	gi|57116681|ref|NC_000962.2|_3375664_3374651		Methionine synthase II (cobalamin-independent)		CDS	cobalamin-independent synthase, Catalytic domain protein			
+	3375758	3376387	630	Lipoprotein LpqA	peg	gi|57116681|ref|NC_000962.2|_3375758_3376387		PknH-like extracellular domain.		CDS	pknH-like extracellular domain protein			
-	3376490	3376840	351	ESAT-6-like protein EsxQ	peg	gi|57116681|ref|NC_000962.2|_3376840_3376490		Uncharacterized protein conserved in bacteria		CDS	putative eSAT-6-like protein esxQ			
-	3376939	3378243	1305	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3378243_3376939		PPE-repeat proteins		CDS	PPE family protein			
-	3378495	3378662	168	FIG00822816: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3378662_3378495		hypothetical protein		CDS	hypothetical protein			
-	3378711	3379004	294	10 kDa antigen CFP7	peg	gi|57116681|ref|NC_000962.2|_3379004_3378711		WXG100 family type VII secretion target		CDS	ESAT-6-like protein esxR		esxR	
-	3379036	3379344	309	PE family protein	peg	gi|57116681|ref|NC_000962.2|_3379344_3379036		Proteins of 100 residues with WXG.		CDS	pe family protein			
-	3379376	3380452	1077	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3380452_3379376		PPE family.		CDS	PPE family protein			
-	3380679	3380996	318	PE family protein	peg	gi|57116681|ref|NC_000962.2|_3380996_3380679		PE family.		CDS	PE family protein			
-	3381375	3382670	1296	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3382670_3381375		Transposase and inactivated derivatives		CDS	transposase, Mutator family protein			
-	3382785	3383888	1104	tRNA-specific 2-thiouridylase MnmA	peg	gi|57116681|ref|NC_000962.2|_3383888_3382785		tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	2.8.1.-	CDS	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	2.1.1.61	trmU	
-	3383885	3385066	1182	Cysteine desulfurase (EC 2.8.1.7)	peg	gi|57116681|ref|NC_000962.2|_3385066_3383885		Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes	2.8.1.7	CDS	aminotransferase class-V family protein			
-	3385163	3386077	915	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	peg	gi|57116681|ref|NC_000962.2|_3386077_3385163		lyso-ornithine lipid acyltransferase		CDS	acyltransferase family protein			
-	3386074	3386919	846	Putative hemolysin	peg	gi|57116681|ref|NC_000962.2|_3386919_3386074		ornithine-acyl[acyl carrier protein] N-acyltransferase		CDS	acetyltransferase domain protein			
-	3387075	3388031	957	"Electron transfer flavoprotein, alpha subunit"	peg	gi|57116681|ref|NC_000962.2|_3388031_3387075		electron transfer flavoprotein alpha subunit apoprotein		CDS	electron transfer flavodomain protein			
-	3388070	3388870	801	"Electron transfer flavoprotein, beta subunit"	peg	gi|57116681|ref|NC_000962.2|_3388870_3388070		electron transfer flavoprotein beta subunit		CDS	electron transfer flavodomain protein			
+	3389101	3389925	825	Methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3389179_3389925		Methyltransferase domain.		CDS	methyltransferase domain protein			
+	3389943	3391502	1560	"Glycogen branching enzyme, GH-57-type, archaeal (EC 2.4.1.18)"	peg	gi|57116681|ref|NC_000962.2|_3389943_3391502		Uncharacterized conserved protein	2.4.1.18	CDS	glycosyl hydrolase 57 family protein			
+	3391546	3392778	1233	"Glycosyl transferase, group 1"	peg	gi|57116681|ref|NC_000962.2|_3391546_3392778		Glycosyltransferase	2.4.1.11	CDS	glycosyl transferases group 1 family protein			
+	3392812	3393201	390	FIG00820699: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3392872_3393201		hypothetical protein		CDS	conserved hypothetical protein			
+	3393380	3393928	549	FIG00820106: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3393380_3393928		Domain of unknown function (DUF4333).		CDS	conserved hypothetical protein			
-	3394019	3394921	903	Galactoside O-acetyltransferase (EC 2.3.1.18)	peg	gi|57116681|ref|NC_000962.2|_3394921_3394019		Acetyltransferase (isoleucine patch superfamily)		CDS	bacterial transferase hexapeptide family protein			
-	3396458	3397141	684	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3397141_3396458		Protein of unknown function (DUF3298).		CDS	immunogenic protein MPT64		mpt64	
+	3395454	3396461	1008	FIG00995884: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3395454_3396461		FOG: WD40-like repeat		CDS	PQQ enzyme repeat family protein			
-	3397214	3398290	1077	Methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3398290_3397214		hypothetical protein		CDS	putative sAM-dependent methyltransferase			
-	3398425	3399480	1056	Methyltransferase domain	peg	gi|57116681|ref|NC_000962.2|_3399408_3398425		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	ubiE/COQ5 methyltransferase family protein			
-	3399419	3400204	786	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_3400204_3399419		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase/isomerase family protein			
-	3400192	3401058	867	FIG00996530: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3401001_3400192		NUDIX domain.		CDS	NUDIX domain protein			
-	3401055	3401918	864	ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_3401900_3401055		ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA	3.6.3.34	CDS	ABC transporter family protein			
-	3401933	3403162	1230	Phosphoserine phosphatase (EC 3.1.3.3)	peg	gi|57116681|ref|NC_000962.2|_3403162_3401933		phosphoserine phosphatase (EC 3.1.3.3)	3.1.3.3	CDS	phosphoserine phosphatase SerB	3.1.3.3	serB	
-	3403200	3404921	1722	Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	peg	gi|57116681|ref|NC_000962.2|_3404807_3403200		cytochrome c oxidase, subunit I	1.9.3.1	CDS	cytochrome c oxidase, subunit I	1.9.3.1	ctaD	
+	3404811	3405218	408	FIG00824201: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3404811_3405218					conserved hypothetical protein			
+	3405232	3406215	984	"Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1)"	peg	gi|57116681|ref|NC_000962.2|_3405232_3406215		ABC-type Fe3+-hydroxamate transport system, periplasmic component		CDS	periplasmic binding family protein			
-	3407314	3407688	375	FIG00822200: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3407688_3407314		Protein of unknown function (DUF3349).		CDS	conserved hypothetical protein			
+	3406285	3407325	1041	Cinnamyl alcohol dehydrogenase/reductase (EC 1.1.1.195) @ Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|57116681|ref|NC_000962.2|_3406285_3407325		Zn-dependent alcohol dehydrogenases	1.-	CDS	NADP-dependent alcohol dehydrogenase C	1.1.1.2	adhC	
+	3407668	3407820	153	FIG00822353: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3407668_3407820					putative predicted protein			
-	3408022	3408306	285	FIG00821545: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3408306_3408022		hypothetical protein		CDS	conserved hypothetical protein			
-	3408404	3409378	975	"Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)"	peg	gi|57116681|ref|NC_000962.2|_3409378_3408404		ribonucleoside-diphosphate reductase class Ib beta subunit (EC 1.17.4.1)	1.17.4.1	CDS	ribonucleoside-diphosphate reductase subunit beta nrdF2	1.17.4.1	nrdF2	
-	3409509	3411083	1575	"Monooxygenase, flavin-binding family"	peg	gi|57116681|ref|NC_000962.2|_3411083_3409509		Predicted flavoprotein involved in K+ transport		CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
-	3411217	3411957	741	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3411915_3411217		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	3412085	3414262	2178	"Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)"	peg	gi|57116681|ref|NC_000962.2|_3414166_3412085		ribonucleoside-diphosphate reductase class Ib alpha subunit (EC 1.17.4.1)	1.17.4.1	CDS	ribonucleoside-diphosphate reductase, alpha subunit	1.17.4.1		
-	3414232	3414684	453	Ribonucleotide reduction protein NrdI	peg	gi|57116681|ref|NC_000962.2|_3414684_3414232		ribonucleoside-diphosphate reductase 2, operon protein nrdI		CDS	nrdI protein		nrdI	
-	3414719	3414958	240	"Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib"	peg	gi|57116681|ref|NC_000962.2|_3414958_3414719		ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit (EC 1.17.4.1)		CDS	nrdH-redoxin		nrdH	
-	3415435	3415989	555	NADPH:quinone oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_3415989_3415435		Predicted flavoprotein		CDS	NADPH-dependent FMN reductase family protein			
+	3416081	3416695	615	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3416228_3416695		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	3416705	3417745	1041	DNA polymerase-like protein MT3142	peg	gi|57116681|ref|NC_000962.2|_3416705_3417745		Nucleotidyltransferase/DNA polymerase involved in DNA repair	2.7.7.7	CDS	impB/mucB/samB family protein			
-	3417799	3418662	864	Short chain dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_3418662_3417799		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
-	3418726	3419376	651	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3419376_3418726		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	3419492	3420970	1479	Cytochrome P450 136	peg	gi|57116681|ref|NC_000962.2|_3419492_3420970		Cytochrome P450		CDS	cytochrome P450 family protein			
+	3421278	3421430	153	FIG00820792: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3421278_3421430					putative predicted protein			
-	3421741	3423213	1473	"Transcriptional regulator, GntR family"	peg	gi|57116681|ref|NC_000962.2|_3423213_3421741		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
-	3423262	3425427	2166	Butyryl-CoA dehydrogenase (EC 1.3.99.2)	peg	gi|57116681|ref|NC_000962.2|_3425427_3423262		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
+	3425599	3427107	1509	ATP-dependent DNA ligase (EC 6.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_3425614_3427107		DNA ligase I, ATP-dependent (dnl1)	6.5.1.1	CDS	DNA ligase I, ATP-dependent family protein	6.5.1.1		
+	3427243	3429519	2277	Carbon starvation protein A	peg	gi|57116681|ref|NC_000962.2|_3427243_3429519		Carbon starvation protein, predicted membrane protein		CDS	carbon starvation CstA family protein			
-	3429825	3430250	426	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3430250_3429825		Predicted membrane protein		CDS	doxX family protein			
+	3430387	3430710	324	Multidrug resistance protein mmr	peg	gi|57116681|ref|NC_000962.2|_3430387_3430710		Membrane transporters of cations and cationic drugs		CDS	multidrug transporter emrE		emrE	
+	3430707	3431315	609	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3430707_3431315		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	3431293	3431838	546	FIG00823332: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3431293_3431838		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
-	3431979	3433622	1644	Phosphoglucomutase (EC 5.4.2.2)	peg	gi|57116681|ref|NC_000962.2|_3433622_3431979		phosphoglucomutase, alpha-D-glucose phosphate-specific	5.4.2.2	CDS	phosphoglucomutase, alpha-D-glucose phosphate-specific	5.4.2.2	pgm	
+	3433692	3434090	399	Protein CrcB homolog 1	peg	gi|57116681|ref|NC_000962.2|_3433692_3434090		camphor resistance protein CrcB		CDS	crcB-like family protein			
+	3434087	3434467	381	Protein CrcB homolog 2	peg	gi|57116681|ref|NC_000962.2|_3434087_3434467		camphor resistance protein CrcB		CDS	crcB-like family protein			
+	3434464	3435573	1110	FIG00822056: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3434464_3435573		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	3435798	3436313	516	Probable F420-dependent oxidoreductase family protein	peg	gi|57116681|ref|NC_000962.2|_3436313_3435798		Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases		CDS	luciferase-like monooxygenase family protein			
-	3436329	3436685	357	FIG016027: protein of unknown function YeaO	peg	gi|57116681|ref|NC_000962.2|_3436685_3436329		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	3438050	3438973	924	Citrate lyase beta chain (EC 4.1.3.6)	peg	gi|57116681|ref|NC_000962.2|_3438973_3438050		Citrate lyase beta subunit	4.1.3.6, 4.1.3.34	CDS	hpcH/HpaI aldolase/citrate lyase family protein			
+	3436779	3438053	1275	FIG029007: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3436779_3438053		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
+	3439072	3439548	477	FIG00820680: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3439090_3439548		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	3439541	3441352	1812	Choline-sulfatase (EC 3.1.6.6)	peg	gi|57116681|ref|NC_000962.2|_3439541_3441352		Arylsulfatase A and related enzymes		CDS	sulfatase family protein			
+	3441353	3441754	402	Hydroxylaminobenzene mutase hab	peg	gi|57116681|ref|NC_000962.2|_3441353_3441754		hypothetical protein		CDS	putative membrane protein			
-	3441770	3442597	828	Probable F420-dependent oxidoreductase family protein	peg	gi|57116681|ref|NC_000962.2|_3442597_3441770		probable F420-dependent oxidoreductase, Rv2161c family		CDS	putative F420-dependent oxidoreductase, Rv2161c family domain protein			
-	3442656	3445988	3333	"Transcriptional activator of maltose regulon, MalT"	peg	gi|57116681|ref|NC_000962.2|_3445988_3442656		ATP-dependent transcriptional regulator	2.7.11.1	CDS	serine/threonine-protein kinase pknK	2.7.11.1	pknK	
+	3446040	3447278	1239	FIG00820344: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3446139_3447278		Nucleotidyl transferase of unknown function (DUF2204).		CDS	conserved hypothetical protein			
-	3447404	3448426	1023	"Transcriptional regulator, AraC family"	peg	gi|57116681|ref|NC_000962.2|_3448426_3447404		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
+	3448504	3449991	1488	"Monooxygenase, flavin-binding family"	peg	gi|57116681|ref|NC_000962.2|_3448504_3449991		Predicted flavoprotein involved in K+ transport		CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	3449997	3450923	927	Esterase/lipase	peg	gi|57116681|ref|NC_000962.2|_3449997_3450923		Esterase/lipase	3.1.1.-	CDS	alpha/beta hydrolase fold family protein			
+	3450920	3451750	831	PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_3450920_3451750		Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase family protein			
+	3451781	3452887	1107	Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|57116681|ref|NC_000962.2|_3451781_3452887		oxidoreductase, Rxyl_3153 family	1.1.1.284, 1.1.1.1	CDS	NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family protein	1.1.99.36		
+	3452925	3454343	1419	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_3452925_3454343		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		
+	3454340	3455764	1425	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_3454340_3455764		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	putative diacyglycerol O-acyltransferase tgs4			
+	3455761	3457272	1512	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_3455761_3457272		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	AMP-binding enzyme family protein			
-	3457769	3458071	303	FIG00821784: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3458071_3457769		hypothetical protein		CDS				
+	3458211	3459098	888	FIG00821598: hypothetical membrane protein	peg	gi|57116681|ref|NC_000962.2|_3458211_3459098		Membrane protease subunits, stomatin/prohibitin homologs		CDS	SPFH domain / Band 7 family protein			
+	3459047	3460807	1761	FIG00822615: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3459116_3460807		Predicted esterase of the alpha-beta hydrolase superfamily		CDS	patatin-like phospholipase family protein			
-	3460814	3461734	921	"Membrane protein, putative"	peg	gi|57116681|ref|NC_000962.2|_3461734_3460814		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3461760	3462764	1005	putative oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_3462764_3461760		probable F420-dependent oxidoreductase, Rv3093c family		CDS	putative F420-dependent oxidoreductase, Rv3093c family protein			
-	3462761	3463891	1131	Pigment protein	peg	gi|57116681|ref|NC_000962.2|_3463891_3462761		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	3463973	3464449	477	"Transcriptional regulator, HxlR family"	peg	gi|57116681|ref|NC_000962.2|_3463973_3464449		transcriptional regulator, HxlR family		CDS	hxlR-like helix-turn-helix family protein			
+	3464547	3465686	1140	"NADH:flavin oxidoreductases, Old Yellow Enzyme family"	peg	gi|57116681|ref|NC_000962.2|_3464598_3465686		Endo-beta-mannanase		CDS	cellulase family protein			
-	3465778	3467091	1314	"(MTCY164.08c), len: 436. Esterase/lipase, identical to TR:P77909 (EMBL:U76006) ESTERASE/LIPASE (EC 3.1.1.3) (TRIACYLGLYCEROL LIPASE) (437 aa); N-terminal similar to N-terminal of M. tuberculosis PE family members, eg Y03A_MYCTU Q10637 hypothetical glycine-rich 49.6 kd pro (603 aa), fasta scores, opt: 334 E(): 4.8e-13, (43.4% identity in 152 aa overlap). Other relatives include MTCY1A11.25c, 7.8e-14; MTCY21B4.13c, 2.4e-12; MTCY270.06, 5.4e-12; MTCY359.33, 1.2e-11; MTC1A11.04, 1.2ee-11; cY130.seq, 1.3e-11"	peg	gi|57116681|ref|NC_000962.2|_3467091_3465778		Esterase/lipase		CDS	alpha/beta hydrolase fold family protein			
-	3467210	3467413	204							conserved hypothetical protein			
+	3467412	3467612	201	FIG00822995: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3467412_3467612		hypothetical protein		CDS	conserved hypothetical protein			
+	3467609	3467926	318	PemK	peg	gi|57116681|ref|NC_000962.2|_3467786_3467926		Growth inhibitor	3.1.-	CDS	pemK-like family protein			
-	3467967	3468334	368										
-	3468413	3469264	852	FIG00822482: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3469264_3468413		uncharacterized Actinobacterial protein TIGR03083		CDS	conserved hypothetical protein			
-	3469301	3469783	483	tmRNA-binding protein SmpB	peg	gi|57116681|ref|NC_000962.2|_3469783_3469301		SsrA-binding protein		CDS	ssrA-binding protein		smpB	
-	3469786	3470679	894	Cell division protein FtsX	peg	gi|57116681|ref|NC_000962.2|_3470679_3469786		cell division protein FtsX		CDS	ftsX-like permease family protein			
-	3470680	3471372	693	"Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)"	peg	gi|57116681|ref|NC_000962.2|_3471372_3470680		cell division ATP-binding protein FtsE		CDS	cell division ATP-binding protein FtsE		ftsE	
-	3471413	3471850	438	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3471850_3471413		hypothetical protein		CDS	conserved hypothetical protein			
-	3471852	3472778	927	Potassium efflux system KefA protein / Small-conductance mechanosensitive channel	peg	gi|57116681|ref|NC_000962.2|_3472778_3471852		Small-conductance mechanosensitive channel		CDS	mechanosensitive ion channel family protein			
-	3472768	3473904	1137	Peptide chain release factor 2	peg	gi|57116681|ref|NC_000962.2|_3473883_3472768		bacterial peptide chain release factor 2 (bRF-2)		CDS	peptide chain release factor 2		prfB	
+	3474007	3475377	1371	"Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type (EC 1.18.1.2)"	peg	gi|57116681|ref|NC_000962.2|_3474007_3475377		NADPH-dependent glutamate synthase beta chain and related oxidoreductases	1.18.1.2	CDS	NADPH-ferredoxin reductase fprA	1.18.1.2	fprA	
-	3475378	3476961	1584	Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)	peg	gi|57116681|ref|NC_000962.2|_3476961_3475378		FAD/FMN-containing dehydrogenases	2.5.1.26	CDS	FAD linked oxidase, C-terminal domain protein			
-	3476972	3477175	204	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3477106_3476972		hypothetical protein		CDS	putative membrane protein			
+	3477781	3478728	948	Molybdenum cofactor biosynthesis protein MoaA	peg	gi|57116681|ref|NC_000962.2|_3477781_3478728		cyclic pyranopterin monophosphate synthase subunit MoaA (EC 4.1.99.18)		CDS	molybdenum cofactor biosynthesis protein A		moaA	
+	3478779	3479174	396	Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	peg	gi|57116681|ref|NC_000962.2|_3478932_3479174		pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	4.2.1.96	CDS	pterin 4 alpha carbinolamine dehydratase family protein			
+	3479171	3479683	513	Molybdenum cofactor biosynthesis protein MoaC	peg	gi|57116681|ref|NC_000962.2|_3479171_3479683		cyclic pyranopterin monophosphate synthase subunit MoaC (EC 4.1.99.18)		CDS	molybdenum cofactor biosynthesis protein C		moaC	
+	3479700	3479951	252				molybdopterin converting factor, subunit 1, non-archaeal		CDS				
+	3480074	3480742	669	"hydrolase, haloacid dehalogenase-like family"	peg	gi|57116681|ref|NC_000962.2|_3480074_3480742		haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E		CDS	HAD hydrolase, IA, variant 1 family protein			
-	3481013	3481174	162	FIG00820842: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3481174_3481013					hypothetical protein			
+	3480735	3481289	555				Cytosine/adenosine deaminases		CDS				
+	3481403	3482698	1296	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3481403_3482698		Transposase and inactivated derivatives		CDS	transposase, Mutator family protein			
+	3482776	3483945	1170	Sulfur carrier protein adenylyltransferase ThiF	peg	gi|57116681|ref|NC_000962.2|_3482776_3483945		Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2		CDS	putative adenylyltransferase/sulfurtransferase MoeZ			
+	3483974	3484807	834	"Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)"	peg	gi|57116681|ref|NC_000962.2|_3483974_3484807		thiosulfate sulfurtransferase (EC 2.8.1.1)	2.8.1.2, 2.8.1.1	CDS	putative thiosulfate sulfurtransferase			
+	3484809	3485111	303	probable sseC protein	peg	gi|57116681|ref|NC_000962.2|_3484839_3485111		Protein of unknown function (DUF1416).		CDS	conserved hypothetical protein			
+	3485132	3485575	444	Molybdenum cofactor biosynthesis protein MoaE; Molybdopterin converting factor subunit 2	peg	gi|57116681|ref|NC_000962.2|_3485132_3485575		Molybdopterin converting factor, large subunit	2.-	CDS	molybdopterin synthase catalytic subunit	2.-.-.-	moaE1	
+	3485572	3486174	603	Possible methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3485572_3486174		Methyltransferase domain.		CDS	methyltransferase domain protein			
+	3486509	3487711	1203	"Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)"	peg	gi|57116681|ref|NC_000962.2|_3486671_3487711		Cytochrome P450		CDS	cytochrome P450 family protein			
-	3487793	3487945	153	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3487945_3487793					transposase IS200-family domain protein			
+	3488134	3488559	426	FIG00820138: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3488134_3488559		hypothetical protein		CDS	conserved hypothetical protein			
-	3488806	3489075	270				hypothetical protein		CDS				
+	3488737	3489063	327	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3488737_3489063					conserved hypothetical protein			
+	3489482	3490375	894	"transcriptional regulator, AfsR/DnrI/RedD family"	peg	gi|57116681|ref|NC_000962.2|_3489506_3490375		DNA-binding transcriptional activator of the SARP family		CDS	transcriptional regulatory , C terminal family protein			
-	3490476	3491651	1176	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3491651_3490476		PPE-repeat proteins		CDS	PPE family protein			
-	3491702	3491866	165	FIG00820866: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3491821_3491702					conserved hypothetical protein			
-	3491808	3492080	273	FIG00823168: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3492080_3491808								
-	3493168	3493518	351	FIG00822544: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3493518_3493168		hypothetical protein		CDS	conserved hypothetical protein			
+	3492102	3493181	1080	Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_3492102_3493181		hypothetical protein		CDS	nitroreductase family protein			
-	3493600	3494181	582	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3494181_3493600		hypothetical protein		CDS	putative rv3128c-like protein			
-	3494975	3496366	1392	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_3496366_3494975		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	putative diacyglycerol O-acyltransferase tgs1			
+	3494660	3494992	333	probable DNA-binding protein	peg	gi|57116681|ref|NC_000962.2|_3494660_3494992		Pyridoxamine 5'-phosphate oxidase		CDS	conserved hypothetical protein			
-	3497529	3499265	1737	Two component system sensor histidine kinase DevS	peg	gi|57116681|ref|NC_000962.2|_3499265_3497529		Histidine kinase./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./GAF domain.	2.7.13.3	CDS	response regulator	2.7.13.3	devS	
+	3496551	3497549	999	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2	peg	gi|57116681|ref|NC_000962.2|_3496551_3497549		Nitroreductase		CDS	putative NAD(P)H nitroreductase RV3131/MT3217			
-	3499262	3499915	654	Two component transcriptional regulatory protein DevR	peg	gi|57116681|ref|NC_000962.2|_3499915_3499262		two component transcriptional regulator, LuxR family		CDS	transcriptional regulatory protein devR		devR	
-	3499943	3500749	807	Universal stress protein family	peg	gi|57116681|ref|NC_000962.2|_3500749_3499943		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress family protein			
+	3501334	3501732	399	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3501334_3501732		PPE family.		CDS	PPE family protein			
+	3501794	3502936	1143	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3501794_3502936		PPE-repeat proteins		CDS	PPE family protein			
-	3502945	3503259	315	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3503163_3502945		hypothetical protein		CDS	conserved hypothetical protein			
+	3503393	3504175	783	Histidinol-phosphatase [alternative form] (EC 3.1.3.15)	peg	gi|57116681|ref|NC_000962.2|_3503393_3504175		histidinol-phosphate phosphatase (EC 3.1.3.15)	3.1.3.15	CDS	histidinol-phosphatase	3.1.3.15	hisN	
+	3504195	3505283	1089	"COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like"	peg	gi|57116681|ref|NC_000962.2|_3504195_3505283		Pyruvate-formate lyase-activating enzyme	1.97.1.4	CDS	radical SAM superfamily protein			
+	3505327	3506769	1443	"Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)"	peg	gi|57116681|ref|NC_000962.2|_3505327_3506769		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	3506790	3507995	1206	Probable acyl-CoA dehydrogenase (EC 1.3.99.3)	peg	gi|57116681|ref|NC_000962.2|_3506790_3507995		Acyl-CoA dehydrogenases	1.3.99.3	CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	3508095	3509066	972	PROBABLE NADPH QUINONE OXIDOREDUCTASE FADB4 (NADPH:QUINONE REDUCTASE) (ZETA-CRYSTALLIN) (EC 1.6.5.5)	peg	gi|57116681|ref|NC_000962.2|_3508095_3509066		NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	zinc-binding dehydrogenase family protein			
-	3509118	3509546	429	FIG00820149: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3509546_3509118		hypothetical protein		CDS	conserved hypothetical protein			
+	3509654	3510055	402	Probable response regulator	peg	gi|57116681|ref|NC_000962.2|_3509654_3510055		hypothetical protein		CDS	response regulator			
-	3510088	3511317	1230	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3511317_3510088		PPE family.		CDS	PPE family protein			
+	3511577	3512068	492	NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3511592_3512068		NADH dehydrogenase subunit A (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein			
+	3512077	3512631	555	NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3512077_3512631		NADH dehydrogenase subunit B (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase, B subunit			
+	3512628	3513338	711	NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3512628_3513338		NADH dehydrogenase subunit C (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit C	1.6.99.5	nuoC	
+	3513338	3514660	1323	NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3513338_3514660		NADH dehydrogenase subunit D (EC 1.6.5.3)	1.6.5.3	CDS	NADH dehydrogenase (quinone), D subunit	1.6.99.5	nuoD	
+	3514657	3515415	759	NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3514657_3515415		NADH dehydrogenase subunit E (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit E	1.6.99.5	nuoE	
+	3515412	3516749	1338	NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3515412_3516749		NADH dehydrogenase subunit F (EC 1.6.5.3)	1.6.5.3	CDS	NADH oxidoreductase (quinone), F subunit	1.6.99.5	nuoF	
+	3516746	3519166	2421	NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3516746_3519166		NADH dehydrogenase subunit G (EC 1.6.5.3)	1.6.5.3	CDS	NADH dehydrogenase (quinone), G subunit	1.6.99.5	nuoG	
+	3519252	3520514	1263	NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3519252_3520514		NADH dehydrogenase subunit H (EC 1.6.5.3)	1.6.5.3	CDS	NADH dehydrogenase family protein			
+	3520507	3521142	636	NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3520639_3521142		NADH dehydrogenase subunit I (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase, chain I family protein			
+	3521139	3521927	789	NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3521139_3521927		NADH dehydrogenase subunit J (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein			
+	3521924	3522223	300	NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3521924_3522223		NADH dehydrogenase subunit K (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein			
+	3522234	3524135	1902	NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3522246_3524135		NADH dehydrogenase subunit L (EC 1.6.5.3)	1.6.5.3	CDS	proton-translocating NADH-quinone oxidoreductase, chain L family protein	1.6.-.-		
+	3524129	3525793	1665	NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3524132_3525793		NADH dehydrogenase subunit M (EC 1.6.5.3)	1.6.5.3	CDS	proton-translocating NADH-quinone oxidoreductase, chain M family protein			
+	3525790	3527385	1596	NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	peg	gi|57116681|ref|NC_000962.2|_3525790_3527385		NADH dehydrogenase subunit N (EC 1.6.5.3)	1.6.5.3	CDS	proton-translocating NADH-quinone oxidoreductase, chain N family protein			
-	3527391	3529307	1917	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3529163_3527391		PPE-repeat proteins		CDS	PPE family protein			
-	3529338	3529979	642	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3529856_3529338		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	3529990	3531147	1158	"Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit"	peg	gi|57116681|ref|NC_000962.2|_3531138_3529990		Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit		CDS	rieske [2Fe-2S] domain protein			
-	3531208	3531645	438	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3531645_3531208		hypothetical protein		CDS	putative membrane protein			
-	3531642	3532913	1272	POSSIBLE CONSERVED SECRETED PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3532913_3531642		Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)		CDS	conserved hypothetical protein			
-	3532943	3533905	963	Probable methanol dehydrogenase transcriptional regulatory protein MoxR3	peg	gi|57116681|ref|NC_000962.2|_3533905_3532943		MoxR-like ATPases	3.6.3.-	CDS	AAA domain family protein			
-	3533913	3534395	483	FIG00997183: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3534395_3533913		hypothetical protein		CDS	conserved hypothetical protein			
-	3534392	3535351	960	FIG00995849: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3535351_3534392		Domain of unknown function (DUF4129).		CDS	conserved hypothetical protein			
-	3535431	3536057	627	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3536057_3535431		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	3536102	3537238	1137	Phosphotransferase	peg	gi|57116681|ref|NC_000962.2|_3536102_3537238		Predicted aminoglycoside phosphotransferase		CDS	phosphotransferase enzyme family protein			
+	3537238	3538362	1125	Putative uncharacterized protein BCG_3193	peg	gi|57116681|ref|NC_000962.2|_3537238_3538362		hypothetical protein		CDS	conserved hypothetical protein			
-	3539846	3540817	972	Non-heme haloperoxidase Hpx	peg	gi|57116681|ref|NC_000962.2|_3540745_3539846		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
+	3538487	3539851	1365	Amine oxidase [flavin-containing] A (EC 1.4.3.4)	peg	gi|57116681|ref|NC_000962.2|_3538505_3539851		Monoamine oxidase	1.4.3.4	CDS	FAD binding domain protein			
-	3540882	3541364	483				hypothetical protein		CDS				
-	3541443	3542045	603	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3541979_3541443		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	3542138	3542845	708	Putative oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_3542138_3542845		Short-chain dehydrogenases of various substrate specificities		CDS	short chain dehydrogenase family protein			
-	3544344	3545300	957	Epoxide hydrolase (EC 3.3.2.9)	peg	gi|57116681|ref|NC_000962.2|_3545093_3544344		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase family protein			
+	3542860	3544347	1488	putative amidase	peg	gi|57116681|ref|NC_000962.2|_3542866_3544347		Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	amidase family protein			
+	3545447	3546307	861	"hydrolase, alpha/beta hydrolase fold family"	peg	gi|57116681|ref|NC_000962.2|_3545447_3546307		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	1.11.1.-	CDS	dienelactone hydrolase family protein			
+	3546438	3546797	360	AclJ	peg	gi|57116681|ref|NC_000962.2|_3546438_3546797		deazaflavin-dependent nitroreductase family protein		CDS	deazaflavin-dependent oxidoreductase, nitroreductase family protein			
-	3546877	3547056	180	FIG00821191: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3547056_3546877					hypothetical protein			
+	3547037	3547330	294	FIG00820682: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3547037_3547330					putative alanine rich protein			
+	3547543	3548907	1365	ATPase	peg	gi|57116681|ref|NC_000962.2|_3547543_3548907		Predicted ATPase (AAA+ superfamily)		CDS	AAA domain protein			
-	3549254	3549688	435	FIG035400: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3549688_3549254		Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			
-	3549691	3549939	249	FIG031049: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3549939_3549691		prevent-host-death family protein		CDS	prevent-host-death family protein			
+	3550380	3550718	339	FIG032362: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3550380_3550718		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	3550721	3551044	324	"FIG036183: Transcriptional regulator, XRE family"	peg	gi|57116681|ref|NC_000962.2|_3550721_3551044		Predicted transcriptional regulator with C-terminal CBS domains		CDS	helix-turn-helix family protein			
+	3551281	3551607	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3551281_3551607		Transposase and inactivated derivatives		CDS	transposase family protein			
+	3551658	3552542	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3551658_3552542		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	3552764	3553090	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3552764_3553090		Transposase and inactivated derivatives		CDS	transposase family protein			
+	3553141	3554025	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3553141_3554025		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	3554298	3554645	348	FIG046480: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3554298_3554645		Protein of unknown function (DUF2384).		CDS	conserved hypothetical protein			
+	3554642	3555262	621	FIG043360: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3554954_3555262		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	3555422	3556687	1266	FIG030803: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3556687_3555422		hypothetical protein		CDS	conserved hypothetical protein			
+	3556855	3557064	210	FIG069748: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3556873_3557064		hypothetical protein		CDS	hypothetical protein			
+	3557099	3557284	186	FIG064496: Hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3557099_3557284		hypothetical protein		CDS	hypothetical protein			
-	3557311	3558495	1185	PROBABLE TRANSPOSASE	peg	gi|57116681|ref|NC_000962.2|_3558495_3557311		Transposase and inactivated derivatives, IS30 family		CDS	integrase core domain protein			
-	3558629	3558853	225	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3558853_3558629					conserved hypothetical protein			
+	3559560	3560024	465	Oxidoreductase (EC 1.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3559563_3560024		Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases		CDS	luciferase-like monooxygenase family protein			
-	3560194	3563172	2979	INTEGRAL MEMBRANE PROTEIN (Rhomboid family)	peg	gi|57116681|ref|NC_000962.2|_3563148_3560194		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	3560043	3560210	168	FIG00826712: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3560043_3560210		hypothetical protein		CDS	hypothetical protein			
-	3563264	3564262	999	Lon-like protease with PDZ domain	peg	gi|57116681|ref|NC_000962.2|_3564262_3563264		Predicted secreted protein containing a PDZ domain		CDS	lon protease (S16) C-terminal proteolytic domain protein			
+	3564382	3565782	1401	Collagen alpha 1(I) chain precursor	peg	gi|57116681|ref|NC_000962.2|_3564382_3565782		putative hydrolase		CDS	hydrolase family protein			
+	3565788	3566687	900	FIG00822196: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3565863_3566687		hypothetical protein		CDS	conserved hypothetical protein			
-	3566696	3566896	201	FIG00822846: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3566869_3566696		hypothetical protein		CDS	putative conserved protein			
+	3567024	3568367	1344	Ubiquinone biosynthesis monooxygenase UbiB	peg	gi|57116681|ref|NC_000962.2|_3567039_3568367		Predicted unusual protein kinase		CDS	phosphotransferase enzyme family protein			
-	3568401	3568691	291	WhiB-family transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_3568628_3568401		Transcription factor WhiB./AT hook motif.		CDS	AT hook motif family protein			
-	3569109	3571220	2112	"ATP-dependent DNA helicase UvrD/PcrA, actinomycete paralog"	peg	gi|57116681|ref|NC_000962.2|_3571211_3569109		ATP-dependent DNA helicase, Rep family	3.6.4.12	CDS	uvrD/REP helicase N-terminal domain protein			
+	3571335	3571589	255	POSSIBLE GLUTAREDOXIN PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3571335_3571589		Glutaredoxin-like protein		CDS	glutaredoxin family protein			
-	3571602	3572543	942	NADH pyrophosphatase (EC 3.6.1.22)	peg	gi|57116681|ref|NC_000962.2|_3572525_3571602		NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding	3.6.1.22	CDS	NUDIX domain protein			
-	3572602	3573669	1068	Potassium channel protein	peg	gi|57116681|ref|NC_000962.2|_3573669_3572602		K+ transport systems, NAD-binding component		CDS	trkA-N domain protein			
-	3573731	3577036	3306	ATP-dependent DNA helicase SCO5184	peg	gi|57116681|ref|NC_000962.2|_3577036_3573731		Superfamily I DNA and RNA helicases	3.6.4.12	CDS	uvrD/REP helicase N-terminal domain protein			
-	3577033	3580200	3168	ATP-dependent DNA helicase SCO5183	peg	gi|57116681|ref|NC_000962.2|_3580200_3577033		Superfamily I DNA and RNA helicases		CDS	uvrD/REP helicase N-terminal domain protein			
+	3580277	3580495	219	FIG00823358: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3580286_3580495		hypothetical protein		CDS	conserved hypothetical protein			
+	3580638	3581312	675	possible lipase	peg	gi|57116681|ref|NC_000962.2|_3580638_3581312		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	esterase family protein			
+	3581315	3581620	306	Methylated DNA-protein cysteine methyltransferase	peg	gi|57116681|ref|NC_000962.2|_3581315_3581620		O(6)-alkylguanine repair protein YbaZ		CDS	6-O-methylguanine DNA methyltransferase, DNA binding domain protein			
-	3581627	3582505	879	FIG00994019: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3582505_3581627		hypothetical protein		CDS	putative aminoglycoside phosphotransferase			
-	3582532	3583710	1179	Sulfur carrier protein adenylyltransferase ThiF	peg	gi|57116681|ref|NC_000962.2|_3583710_3582532		Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2		CDS	putative adenylyltransferase/sulfurtransferase MoeZ			
-	3583801	3584787	987	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3584472_3583801		Protein of unknown function (DUF3152).		CDS	conserved hypothetical protein			
-	3585677	3585964	288	putative ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_3585964_3585677		Protein of unknown function (DUF3107).		CDS	conserved hypothetical protein			
+	3585004	3585690	687	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3585271_3585690		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	3586156	3586518	363	FIG00819977: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3586485_3586156		hypothetical protein		CDS	putative hrpA-like helicase			
+	3586541	3586834	294	putative membrane protein	peg	gi|57116681|ref|NC_000962.2|_3586541_3586834		Mycobacterium membrane protein.		CDS	mycobacterium membrane family protein			
-	3586844	3587539	696	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3587512_3586844		Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA		CDS	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like family protein			
+	3587798	3589381	1584	putative ATP-dependent RNA helicase	peg	gi|57116681|ref|NC_000962.2|_3587798_3589381		Superfamily II DNA and RNA helicases		CDS	helicase conserved C-terminal domain protein			
+	3589394	3590617	1224	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_3589394_3590617		hypothetical protein		CDS	putative conserved alanine and valine rich protein			
-	3590692	3591492	801	Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj	peg	gi|57116681|ref|NC_000962.2|_3591492_3590692		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
+	3591646	3592257	612	putative phosphoglycerate mutase family protein	peg	gi|57116681|ref|NC_000962.2|_3591652_3592257		Fructose-2,6-bisphosphatase	5.4.2.1	CDS	histidine phosphatase super family protein			
+	3592254	3593372	1119	Isochorismate synthase (EC 5.4.4.2)	peg	gi|57116681|ref|NC_000962.2|_3592254_3593372		isochorismate synthase (EC 5.4.4.2)	5.4.4.2	CDS	isochorismate synthase dhbC	5.4.4.2	dhbC	
-	3593804	3594211	408	PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3594211_3593804		hypothetical protein		CDS	putative membrane protein			
+	3593520	3593852	333	Diamine acetyltransferase (EC 2.3.1.57)	peg	gi|57116681|ref|NC_000962.2|_3593520_3593852		Acetyltransferases		CDS	acetyltransferase family protein			
+	3594468	3595433	966	Transcription regulator [contains diacylglycerol kinase catalytic domain]	peg	gi|57116681|ref|NC_000962.2|_3594477_3595433		Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase		CDS	diacylglycerol kinase catalytic domain protein			
+	3595713	3595967	255	WhiB-like transcription regulator	peg	gi|57116681|ref|NC_000962.2|_3595713_3595967		transcription factor WhiB		CDS	transcription factor WhiB family protein			
-	3596029	3597534	1506	"Signal transduction histidine kinase, subgroup 2"	peg	gi|57116681|ref|NC_000962.2|_3597534_3596029		Signal transduction histidine kinase		CDS	putative sensor histidine kinase pdtaS			
-	3597551	3597790	240	Biotin carboxyl carrier protein	peg	gi|57116681|ref|NC_000962.2|_3597772_3597551		Pyruvate carboxylase		CDS	biotinylated protein TB7.3			
-	3598051	3598356	306	Anti-sigma factor	peg	gi|57116681|ref|NC_000962.2|_3598356_3598051		mycothiol system anti-sigma-R factor		CDS				
-	3598353	3598904	552	FIG00821786: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3598757_3598353		hypothetical protein		CDS	conserved hypothetical protein			
-	3598901	3599668	768	RNA polymerase sigma factor RpoE	peg	gi|57116681|ref|NC_000962.2|_3599668_3598901		RNA polymerase sigma-70 factor, TIGR02947 family		CDS	RNA polymerase sigma factor		sigR	
+	3599851	3600699	849	Short-chain dehydrogenase/reductase SDR	peg	gi|57116681|ref|NC_000962.2|_3599851_3600699		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
-	3600795	3601022	228	FIG00823618: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3601022_3600795		hypothetical protein		CDS	conserved hypothetical protein			
-	3601016	3602440	1425	Putative phosphotransferase	peg	gi|57116681|ref|NC_000962.2|_3602332_3601016		Predicted aminoglycoside phosphotransferase		CDS	acetyltransferase family protein			
-	3602564	3603322	759	FIG00996837: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3603322_3602564		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	3603377	3604729	1353	5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	peg	gi|57116681|ref|NC_000962.2|_3603425_3604729		3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)	2.5.1.19	CDS	3-phosphoshikimate 1-carboxyvinyltransferase	2.5.1.19	aroA	
+	3604726	3605718	993	Ribosome small subunit-stimulated GTPase EngC	peg	gi|57116681|ref|NC_000962.2|_3604726_3605718		ribosome small subunit-dependent GTPase A	3.6.1.-	CDS	ribosome small subunit-dependent GTPase A	3.6.-.-	rsgA	
-	3605751	3607034	1284	POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE)	peg	gi|57116681|ref|NC_000962.2|_3607034_3605751		Fatty acid desaturase	1.14.19.3	CDS	stearoyl-CoA 9-desaturase		desA3	
-	3607112	3608254	1143	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	peg	gi|57116681|ref|NC_000962.2|_3608254_3607112		Flavodoxin reductases (ferredoxin-NADPH reductases) family 1		CDS	stearoyl-CoA 9-desaturase electron transfer partner			
-	3608364	3608873	510	FIG00996471: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3608873_3608364		hypothetical protein		CDS	conserved hypothetical protein			
-	3608870	3609757	888	UDP-galactose-lipid carrier transferase (EC 2.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_3609757_3608870		polyphosphate kinase 2, PA0141 family		CDS	polyphosphate kinase 2	2.7.4.1	ppk2	
-	3609781	3610383	603	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_3610380_3609781		hypothetical protein		CDS	conserved hypothetical protein			
-	3610374	3611189	816	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_3611189_3610374		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	putative diacyglycerol O-acyltransferase tgs3			
+	3611390	3611941	552	FIG00820824: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3611390_3611941		hypothetical protein		CDS	conserved hypothetical protein			
-	3611959	3613116	1158	putative transmembrane transport protein	peg	gi|57116681|ref|NC_000962.2|_3613116_3611959		potassium/proton antiporter membrane subunit, CPA2 family (TC 2.A.37.5.2)		CDS	sodium/hydrogen exchanger family protein			
-	3613121	3613603	483	"TrkA, Potassium channel"	peg	gi|57116681|ref|NC_000962.2|_3613603_3613121		potassium/proton antiporter regulatory subunit, CPA2 family (TC 2.A.37.5.2)		CDS	trkA-C domain protein			
-	3613664	3614398	735	putative conserved integral membrane protein	peg	gi|57116681|ref|NC_000962.2|_3614398_3613664		Putative protein-S-isoprenylcysteine methyltransferase		CDS	nnrU family protein			
-	3614457	3617663	3207	Multidrug resistance protein B	peg	gi|57116681|ref|NC_000962.2|_3617663_3614457		drug resistance transporter, EmrB/QacA subfamily		CDS	H+ antiporter-2 family protein			
-	3617682	3620579	2898	Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_3620495_3617682		protein translocase subunit secA		CDS	preprotein translocase, SecA subunit		secA	
-	3620610	3621269	660	Ribosomal subunit interface protein	peg	gi|57116681|ref|NC_000962.2|_3621254_3620610		ribosomal subunit interface protein		CDS	ribosomal subunit interface protein		raiA	
-	3621570	3622295	726	"Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy"	peg	gi|57116681|ref|NC_000962.2|_3622211_3621570		Predicted amidophosphoribosyltransferases		CDS	phosphoribosyl transferase domain protein			
-	3622249	3623091	843	FIG00820662: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3623043_3622249		Protein of unknown function (DUF2993).		CDS	conserved hypothetical protein			
-	3623159	3624922	1764	LpqB	peg	gi|57116681|ref|NC_000962.2|_3624910_3623159		Sporulation and spore germination./Lipoprotein LpqB beta-propeller domain.		CDS	lipoLpqB beta-propeller domain protein			
-	3624910	3626613	1704	Sensor histidine kinase MtrB (EC 2.7.3.-)	peg	gi|57116681|ref|NC_000962.2|_3626613_3624910		Signal transduction histidine kinase	2.7.13.3	CDS	HAMP domain protein			
-	3626663	3627349	687	DNA-binding response regulator mtrA	peg	gi|57116681|ref|NC_000962.2|_3627349_3626663		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	response regulator		mtrA	
-	3627419	3628063	645	Thymidylate kinase (EC 2.7.4.9)	peg	gi|57116681|ref|NC_000962.2|_3628015_3627419		thymidylate kinase (EC 2.7.4.9)	2.7.4.9	CDS	thymidylate kinase	2.7.4.9	tmk	
-	3628160	3629647	1488	Adenosylhomocysteinase (EC 3.3.1.1)	peg	gi|57116681|ref|NC_000962.2|_3629647_3628160		adenosylhomocysteinase (EC 3.3.1.1)	3.3.1.1	CDS	adenosylhomocysteinase	3.3.1.1	ahcY	
-	3629752	3630387	636	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3630357_3629752		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	3630384	3630566	183	Rubredoxin	peg	gi|57116681|ref|NC_000962.2|_3630566_3630384		Rubredoxin		CDS	rubredoxin		rubA	
-	3630571	3630741	171	Rubredoxin	peg	gi|57116681|ref|NC_000962.2|_3630741_3630571		Rubredoxin		CDS	rubredoxin-2		alkG	
-	3630738	3631988	1251	Alkane-1 monooxygenase (EC 1.14.15.3)	peg	gi|57116681|ref|NC_000962.2|_3631988_3630738		alkane 1-monooxygenase (EC 1.14.15.3)	1.14.15.3	CDS	fatty acid desaturase family protein			
-	3632097	3633584	1488	Amino acid permease	peg	gi|57116681|ref|NC_000962.2|_3633584_3632097		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	amino acid permease family protein			
-	3635041	3636267	1227	Mannose-6-phosphate isomerase (EC 5.3.1.8)	peg	gi|57116681|ref|NC_000962.2|_3636267_3635041		mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8)	5.3.1.8	CDS	mannose-6-phosphate isomerase, class I	5.3.1.8	manA	
+	3633675	3635063	1389	putative secreted protein	peg	gi|57116681|ref|NC_000962.2|_3633675_3635063		hypothetical protein		CDS	conserved hypothetical protein			
-	3636275	3637315	1041	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3637315_3636275		hypothetical protein		CDS	putative tobH			
-	3637312	3638709	1398	Phosphomannomutase (EC 5.4.2.8)	peg	gi|57116681|ref|NC_000962.2|_3638688_3637312		phosphomannomutase (EC 5.4.2.8)		CDS	phosphoglucomutase/phosphomannomutase, C-terminal domain protein			
-	3638811	3639302	492	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3639203_3638811		Protein of unknown function (DUF3499).		CDS	conserved hypothetical protein			
+	3639425	3639844	420	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3639488_3639844		Possibl zinc metallo-peptidase.		CDS	possibl zinc metallo-peptidase family protein			
-	3639872	3640243	372	Sporulation regulatory protein WhiB	peg	gi|57116681|ref|NC_000962.2|_3640243_3639872		transcription factor WhiB		CDS	transcription factor WhiB family protein			
+	3640543	3641538	996	"Lactyl (2) diphospho-(5')guanosine:7,8-didemethyl-8-hydroxy-5-deazariboflavin 2-phospho-L-lactate transferase"	peg	gi|57116681|ref|NC_000962.2|_3640543_3641538		LPPG:FO 2-phospho-L-lactate transferase (EC 2.7.8.28)	2.7.8.28	CDS	FO 2-phospho-L-lactate transferase	2.7.8.-	cofD	
+	3641535	3642881	1347	Coenzyme F420-0:L-glutamate ligase @ Coenzyme F420-1:L-glutamate ligase / domain of unknown function	peg	gi|57116681|ref|NC_000962.2|_3641535_3642881		coenzyme F420-0 gamma-glutamyl ligase (EC 6.3.2.31)	6.3.2.31, 6.3.2.34	CDS	gamma-glutamyl ligase	6.3.2.-	cofE	
+	3643249	3644838	1590	probable DNA methylase	peg	gi|57116681|ref|NC_000962.2|_3643249_3644838		Adenine-specific DNA methylase		CDS	eco57I restriction-modification methylase family protein			
-	3644898	3645977	1080	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	peg	gi|57116681|ref|NC_000962.2|_3645977_3644898		Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	2.7.7.13	CDS	bacterial transferase hexapeptide family protein			
-	3645979	3646902	924	"dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL"	peg	gi|57116681|ref|NC_000962.2|_3646902_3645979		Predicted glycosyltransferases		CDS	dTDP-Rha:alpha-D-GlcNAc-pyrophosphate polyprenol, alpha-3-L-rhamnosyltransferase	2.4.-.-	wbbL	
-	3646895	3647809	915	dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	peg	gi|57116681|ref|NC_000962.2|_3647809_3646895		dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	1.1.1.133	CDS	dTDP-4-dehydrorhamnose reductase	1.1.1.133	rfbD	
+	3647885	3649381	1497	"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)"	peg	gi|57116681|ref|NC_000962.2|_3647903_3649381		transcriptional attenuator, LytR family		CDS	cell envelope-related function transcriptional attenuator common domain protein			
+	3649369	3650109	741	FIG00996117: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3649369_3650109		TIGR03089 family protein		CDS	AMP-binding enzyme family protein			
+	3650234	3650515	282	FIG00821109: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3650234_3650515		Protein of unknown function (DUF1490).		CDS	conserved hypothetical protein			
-	3652679	3653347	669	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_3653299_3652679		Predicted Co/Zn/Cd cation transporters		CDS	cation efflux family protein			
+	3650526	3652682	2157	Probable cation-transporting P-type ATPase C (EC 3.6.3.-) (Metal-transporting ATPase Mta72)	peg	gi|57116681|ref|NC_000962.2|_3650526_3652682		copper-(or silver)-translocating P-type ATPase	3.6.3.-	CDS	copper-translocating P-type ATPase	3.6.3.4		
+	3653448	3654632	1185	L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)	peg	gi|57116681|ref|NC_000962.2|_3653448_3654632		Predicted acyl-CoA transferases/carnitine dehydratase		CDS	coA-transferase III family protein			
-	3656920	3658089	1170	Butyryl-CoA dehydrogenase (EC 1.3.99.2)	peg	gi|57116681|ref|NC_000962.2|_3658089_3656920		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase	1.3.99.3		
+	3654661	3656931	2271	Carbonic anhydrase (EC 4.2.1.1)	peg	gi|57116681|ref|NC_000962.2|_3654661_3656931		Sulfate permease and related transporters (MFS superfamily)	4.2.1.1	CDS	sulfate transporter family protein			
-	3658114	3658638	525	Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)	peg	gi|57116681|ref|NC_000962.2|_3658638_3658114		5-(carboxyamino)imidazole ribonucleotide mutase	5.4.99.18	CDS	N5-carboxyaminoimidazole ribonucleotide mutase	5.4.99.18	purE	
-	3658635	3659861	1227	Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)	peg	gi|57116681|ref|NC_000962.2|_3659861_3658635		5-(carboxyamino)imidazole ribonucleotide synthase	6.3.4.18	CDS	phosphoribosylaminoimidazole carboxylase, ATPase subunit	4.1.1.21	purK	
-	3660651	3661169	519	FIG00995613: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3661169_3660651		Predicted membrane protein		CDS	bacterial PH domain protein			
+	3659878	3660696	819	FIG00821069: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3659878_3660696		Predicted membrane protein		CDS	gtrA-like family protein			
-	3661212	3662012	801	Biotin-protein ligase (EC 6.3.4.15)	peg	gi|57116681|ref|NC_000962.2|_3662012_3661212		birA, biotin-[acetyl-CoA-carboxylase] ligase region	6.3.4.15	CDS	biotin--[acetyl-CoA-carboxylase] ligase	6.3.4.15		
+	3662035	3663708	1674	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	peg	gi|57116681|ref|NC_000962.2|_3662035_3663708		Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)	6.4.1.3	CDS	putative propionyl-CoA carboxylase beta chain 5			
+	3663731	3664222	492	FIG00820143: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3663992_3664222		Acyl-CoA carboxylase epsilon subunit.		CDS	acyl-CoA carboxylase epsilon subunit			
+	3664219	3664887	669	Septum formation protein Maf	peg	gi|57116681|ref|NC_000962.2|_3664219_3664887		MAF protein		CDS	septum formation protein Maf		maf	
+	3664856	3665821	966	"Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)"	peg	gi|57116681|ref|NC_000962.2|_3664958_3665821		Rhodanese-related sulfurtransferase	2.8.1.2, 2.8.1.1	CDS	putative thiosulfate sulfurtransferase sseA			
+	3665818	3666249	432	Sulfur acceptor protein SufE for iron-sulfur cluster assembly	peg	gi|57116681|ref|NC_000962.2|_3665818_3666249		SufE protein probably involved in Fe-S center assembly		CDS	fe-S metabolism associated domain protein			
+	3666357	3668159	1803	Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) / Biotin carboxyl carrier protein of acetyl-CoA carboxylase	peg	gi|57116681|ref|NC_000962.2|_3666357_3668159		biotin carboxyl carrier protein/biotin carboxylase (EC 6.3.4.14)	6.3.4.14	CDS	carbamoyl-phosphate synthase L chain, ATP binding domain protein			
-	3668169	3668954	786	RNA polymerase sigma factor SigB	peg	gi|57116681|ref|NC_000962.2|_3668954_3668169		RNA polymerase sigma-70 factor, sigma-B/F/G subfamily		CDS	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily protein			
-	3668951	3669457	507	Serine-protein kinase RsbW (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_3669457_3668951		Anti-sigma regulatory factor (Ser/Thr protein kinase)		CDS	histidine kinase-like ATPase domain protein			
-	3669586	3669897	312	Putative uncharacterized protein usfY	peg	gi|57116681|ref|NC_000962.2|_3669897_3669586		hypothetical protein		CDS	putative usfY protein			
-	3670034	3670411	378	Possible transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_3670411_3670034		hypothetical protein		CDS	putative membrane protein			
-	3670445	3671713	1269	Probable L-lysine-epsilon aminotransferase (EC 2.6.1.36) (L-lysine aminotransferase) (Lysine 6-aminotransferase)	peg	gi|57116681|ref|NC_000962.2|_3671713_3670445		L-lysine 6-transaminase precursor (EC 2.6.1.36)	2.6.1.36	CDS	L-lysine 6-transaminase	2.6.1.36	lat	
-	3671845	3672297	453	"Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system"	peg	gi|57116681|ref|NC_000962.2|_3672297_3671845		transcriptional regulator, AsnC family		CDS	asnC family protein			
+	3672328	3673575	1248	Uncharacterized protein Rv3292/MT3391	peg	gi|57116681|ref|NC_000962.2|_3672328_3673575		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	3673602	3675086	1485	Aldehyde dehydrogenase B (EC 1.2.1.22)	peg	gi|57116681|ref|NC_000962.2|_3673602_3675086		delta-1-piperideine-6-carboxylate dehydrogenase (EC 1.2.1.-)	1.2.1.3	CDS	aldehyde dehydrogenase family protein			
-	3675186	3675995	810	Possible AAA family ATPase	peg	gi|57116681|ref|NC_000962.2|_3675935_3675186		Domain of unknown function (DUF4143).		CDS	conserved hypothetical protein			
+	3676066	3676731	666	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3676066_3676731		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	3676775	3681316	4542	Probable ATP-dependent helicase lhr (EC 3.6.1.-)	peg	gi|57116681|ref|NC_000962.2|_3676775_3681316		ATP dependent helicase, Lhr family	3.6.4.-	CDS	DEAD/DEAH box helicase family protein			
+	3681320	3682087	768	Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	peg	gi|57116681|ref|NC_000962.2|_3681320_3682087		Formamidopyrimidine-DNA glycosylase	4.2.99.18, 3.2.2.-	CDS	formamidopyrimidine-DNA glycosylase H2TH domain protein			
-	3682110	3683024	915	POSSIBLE ESTERASE LIPOPROTEIN LPQC	peg	gi|57116681|ref|NC_000962.2|_3683024_3682110		Poly(3-hydroxybutyrate) depolymerase		CDS	prolyl oligopeptidase family protein			
-	3683051	3685963	2913	Arylsulfatase (EC 3.1.6.1)	peg	gi|57116681|ref|NC_000962.2|_3685963_3683051		Arylsulfatase A and related enzymes	3.1.6.1	CDS	sulfatase family protein			
-	3685983	3686900	918	RNA pseudouridylate synthase family protein	peg	gi|57116681|ref|NC_000962.2|_3686867_3685983		Pseudouridylate synthases, 23S RNA-specific	5.4.99.28, 5.4.99.29	CDS	RNA pseudouridylate synthase family protein			
-	3686912	3687577	666	Phosphate transport system regulatory protein PhoU	peg	gi|57116681|ref|NC_000962.2|_3687577_3686912		phosphate transport system regulatory protein PhoU		CDS	phosphate transport system regulatory protein PhoU		phoU	
-	3687685	3689442	1758	Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	peg	gi|57116681|ref|NC_000962.2|_3689442_3687685		Glycerol-3-phosphate dehydrogenase	1.1.5.3	CDS	FAD binding domain protein			
-	3689457	3690938	1482	Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	peg	gi|57116681|ref|NC_000962.2|_3690938_3689457		Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	1.8.1.4	CDS	NAD	1.6.5.2	lpdA	
+	3691021	3691620	600	FIG01122412: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3691141_3691620		AIG2-like family.		CDS	AIG2-like family protein			
-	3691639	3692808	1170	Possible N-acyl-L-amino acid amidohydrolase amiA1 (EC 3.5.1.-)	peg	gi|57116681|ref|NC_000962.2|_3692808_3691639		amidohydrolase	3.5.1.-	CDS	amidohydrolase family protein			
-	3692805	3693989	1185	"Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A"	peg	gi|57116681|ref|NC_000962.2|_3693989_3692805		amidohydrolase		CDS	amidohydrolase family protein			
+	3694054	3694860	807	Purine nucleoside phosphorylase (EC 2.4.2.1)	peg	gi|57116681|ref|NC_000962.2|_3694054_3694860		purine nucleotide phosphorylase	2.4.2.1	CDS	purine nucleotide phosphorylase	2.4.2.1		
+	3694864	3696468	1605	Phosphomannomutase (EC 5.4.2.8)	peg	gi|57116681|ref|NC_000962.2|_3694864_3696468		Phosphomannomutase		CDS	phosphoglucomutase/phosphomannomutase, C-terminal domain protein			
-	3696470	3697186	717	uracil phosphoribosyltransferase	peg	gi|57116681|ref|NC_000962.2|_3697093_3696470		uracil phosphoribosyltransferase (EC 2.4.2.9)	2.4.2.9	CDS	uracil phosphoribosyltransferase	2.4.2.9	upp	
+	3697198	3698097	900	Possible acid phosphatase (EC 3.1.3.2)	peg	gi|57116681|ref|NC_000962.2|_3697258_3698097		Phosphoesterase family.	3.1.3.2	CDS	phosphoesterase family protein			
+	3698121	3699383	1263	FIG026501: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3698121_3699383		hypothetical protein		CDS	conserved hypothetical protein			
-	3699404	3700336	933	"Hydrolase, alpha/beta hydrolase fold family"	peg	gi|57116681|ref|NC_000962.2|_3700330_3699404		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
-	3700356	3700526	171	FIG00820553: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3700526_3700356		hypothetical protein		CDS	hypothetical protein			
-	3700705	3701016	312	SECRETED PROTEIN ANTIGEN	peg	gi|57116681|ref|NC_000962.2|_3701016_3700705		hypothetical protein		CDS	hypothetical protein			
-	3701087	3702184	1098	Adenosine deaminase (EC 3.5.4.4)	peg	gi|57116681|ref|NC_000962.2|_3702184_3701087		adenosine deaminase (EC 3.5.4.4)	3.5.4.4	CDS	adenosine deaminase	3.5.4.4	add	
-	3702184	3703467	1284	Thymidine phosphorylase (EC 2.4.2.4)	peg	gi|57116681|ref|NC_000962.2|_3703467_3702184		thymidine phosphorylase (EC 2.4.2.4)	2.4.2.4	CDS	pyrimidine-nucleoside phosphorylase family protein	2.4.2.2	pdp	
-	3703464	3703865	402	Cytidine deaminase (EC 3.5.4.5)	peg	gi|57116681|ref|NC_000962.2|_3703844_3703464		cytidine deaminase (EC 3.5.4.5)	3.5.4.5	CDS	cytidine deaminase	3.5.4.5	cdd	
+	3704102	3704440	339	Succinate dehydrogenase cytochrome b-556 subunit	peg	gi|57116681|ref|NC_000962.2|_3704102_3704440		succinate dehydrogenase subunit C (EC 1.3.5.1)		CDS	succinate dehydrogenase, cytochrome b556 subunit		sdhC	
+	3704422	3704871	450	Succinate dehydrogenase hydrophobic membrane anchor protein	peg	gi|57116681|ref|NC_000962.2|_3704422_3704871		succinate dehydrogenase subunit D (EC 1.3.5.1)		CDS	succinate dehydrogenase/Fumarate reductase transmembrane subunit			
+	3705000	3706772	1773	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	peg	gi|57116681|ref|NC_000962.2|_3705024_3706772		succinate dehydrogenase subunit A (EC 1.3.5.1)	1.3.99.1	CDS	succinate dehydrogenase, flavoprotein subunit		sdhA	
+	3706772	3707563	792	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	peg	gi|57116681|ref|NC_000962.2|_3706772_3707563		succinate dehydrogenase subunit B (EC 1.3.5.1)	1.3.99.1	CDS	succinate dehydrogenase and fumarate reductase iron-sulfur family protein			
-	3707642	3708070	429	"Toxin 1, PIN domain"	peg	gi|57116681|ref|NC_000962.2|_3708070_3707642		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC39			
-	3708074	3708316	243	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3708316_3708074		Ribbon-helix-helix protein, copG family.		CDS	ribbon-helix-helix , copG family protein			
-	3708438	3709070	633	Possible methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3709070_3708438		Methyltransferase domain.		CDS	methyltransferase domain protein			
-	3709049	3709714	666	Molybdenum cofactor biosynthesis protein MoaE	peg	gi|57116681|ref|NC_000962.2|_3709714_3709049		molybdopterin synthase subunit MoaE (EC 2.8.1.12)/molybdopterin synthase subunit MoaD (EC 2.8.1.12)	2.-	CDS	molybdopterin converting factor, subunit 1		moaD	
-	3709715	3710248	534	Molybdenum cofactor biosynthesis protein MoaC	peg	gi|57116681|ref|NC_000962.2|_3710248_3709715		molybdenum cofactor biosynthesis protein MoaC		CDS	molybdenum cofactor biosynthesis protein C		moaC	
-	3710245	3710397	153	Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	peg	gi|57116681|ref|NC_000962.2|_3710361_3710245		hypothetical protein		CDS	putative pterin-4-alpha-carbinolamine dehydratase moaB3			
+	3710433	3710759	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3710433_3710759		Transposase and inactivated derivatives		CDS	transposase family protein			
+	3710810	3711694	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3710810_3711694		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	3713394	3714341	948				RNA polymerase sigma factor, sigma-70 family		CDS				
+	3711749	3713461	1713	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3711749_3713461		Uncharacterized conserved protein		CDS	carboxymuconolactone decarboxylase family protein			
+	3714392	3715708	1317	Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)	peg	gi|57116681|ref|NC_000962.2|_3714392_3715708		Adenosylmethionine-8-amino-7-oxononanoate aminotransferase		CDS	aminotransferase class-III family protein			
-	3716991	3717218	228	FIG00822519: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3717218_3716991					hypothetical protein			
+	3715777	3716994	1218	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg	gi|57116681|ref|NC_000962.2|_3715816_3716994		D-alanyl-D-alanine carboxypeptidase	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase family protein			
+	3717090	3718598	1509	Sugar-transport integral membrane proteinSugI	peg	gi|57116681|ref|NC_000962.2|_3717315_3718598		MFS transporter, sugar porter (SP) family		CDS	MFS transporter, sugar porter family protein			
+	3718595	3719746	1152	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	peg	gi|57116681|ref|NC_000962.2|_3718595_3719746		N-acetylglucosamine 6-phosphate deacetylase (EC 3.5.1.25)	3.5.1.25	CDS	N-acetylglucosamine-6-phosphate deacetylase	3.5.1.25	nagA	
-	3719937	3720782	846	Hydroxyproline-rich glycoprotein DZ-HRGP precursor	peg	gi|57116681|ref|NC_000962.2|_3720782_3719937		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
+	3720927	3721238	312				hypothetical protein		CDS				
+	3721257	3721697	441	Mercuric resistance operon regulatory protein	peg	gi|57116681|ref|NC_000962.2|_3721257_3721697		Predicted transcriptional regulators		CDS	merR regulatory family protein			
-	3721731	3722600	870	putative membrane protein	peg	gi|57116681|ref|NC_000962.2|_3722600_3721731		ribonuclease, putative		CDS	inner membrane protein YhjD		yhjD	
-	3722621	3723631	1011	Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	peg	gi|57116681|ref|NC_000962.2|_3723631_3722621		tryptophanyl-tRNA synthetase (EC 6.1.1.2)	6.1.1.2	CDS	tryptophan--tRNA ligase	6.1.1.2	trpS	
+	3723916	3724548	633	Alpha/beta hydrolase family	peg	gi|57116681|ref|NC_000962.2|_3723916_3724548		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
-	3724615	3725844	1230	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	peg	gi|57116681|ref|NC_000962.2|_3725844_3724615		isocitrate dehydrogenase (NADP) (EC 1.1.1.42)	1.1.1.42	CDS	isocitrate dehydrogenase, NADP-dependent	1.1.1.42		
-	3725884	3726096	213	FIG00822939: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3726096_3725884		hypothetical protein		CDS	putative nADP-dependent isocitrate dehydrogenase			
+	3726127	3727476	1350	O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)	peg	gi|57116681|ref|NC_000962.2|_3726127_3727476		O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	2.5.1.49	CDS	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein			
+	3727488	3728627	1140	Homoserine O-acetyltransferase (EC 2.3.1.31)	peg	gi|57116681|ref|NC_000962.2|_3727488_3728627		homoserine O-acetyltransferase (EC 2.3.1.31)	2.3.1.31	CDS	homoserine O-acetyltransferase	2.3.1.31	metX	
+	3728624	3729355	732	Methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_3728624_3729355		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	ubiE/COQ5 methyltransferase family protein			
-	3729364	3736935	7572	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3736920_3729364		PPE-repeat proteins		CDS	PPE family protein			
-	3736984	3738000	1017	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_3738000_3736984		hypothetical protein		CDS	hypothetical protein			
-	3738158	3742768	4611	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3742768_3738158		hypothetical protein		CDS	PE family protein			
-	3743198	3743455	258	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3743449_3743198		Protein of unknown function (DUF3017).		CDS	conserved hypothetical protein			
-	3743711	3753184	9474	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3753184_3743711		PPE-repeat proteins		CDS	PPE family protein			
+	3753765	3754256	492	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3753765_3754256		Transposase.		CDS	transposase family protein			
-	3754293	3755033	741	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3755033_3754293					transposase family protein			
+	3754269	3754550	282				hypothetical protein		CDS				
-	3754585	3755715	1131				hypothetical protein		CDS				
-	3755328	3755564	237	"ISMsm4, transposase"	peg	gi|57116681|ref|NC_000962.2|_3755564_3755328					putative transposase			
-	3755952	3767267	11316	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3767129_3755952		PPE-repeat proteins		CDS	PPE family protein			
-	3767346	3768140	795	probable oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_3768140_3767346		Berberine and berberine like.		CDS	berberine and berberine like family protein			
-	3768222	3768593	372	probable oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_3768593_3768222		FAD/FMN-containing dehydrogenases		CDS	FAD binding domain protein			
-	3768736	3768996	261	POSSIBLE OXIDOREDUCTASE	peg	gi|57116681|ref|NC_000962.2|_3768996_3768736		hypothetical protein		CDS	putative oxidoreductase			
+	3769111	3769500	390	Possible lipoprotein LprJ	peg	gi|57116681|ref|NC_000962.2|_3769111_3769500		Protein of unknown function (DUF732).		CDS	conserved hypothetical protein			
-	3769514	3769807	294	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3769801_3769514		Protein of unknown function (DUF3017).		CDS	conserved hypothetical protein			
-	3769804	3770721	918	Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	peg	gi|57116681|ref|NC_000962.2|_3770721_3769804		5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	1.5.1.5, 3.5.4.9	CDS	bifunctional protein FolD	3.5.4.9	folD	
+	3770773	3771048	276	YefM protein (antitoxin to YoeB)	peg	gi|57116681|ref|NC_000962.2|_3770773_3771048		prevent-host-death family protein		CDS	antitoxin RelJ		relJ	
+	3771045	3771302	258	YoeB toxin protein	peg	gi|57116681|ref|NC_000962.2|_3771045_3771302		toxin-antitoxin system, toxin component, Txe/YoeB family		CDS	addiction module toxin, Txe/YoeB family			
+	3771344	3772534	1191	"NADH:flavin oxidoreductases, Old Yellow Enzyme family"	peg	gi|57116681|ref|NC_000962.2|_3771374_3772534		NADH:flavin oxidoreductases, Old Yellow Enzyme family		CDS	dihydrouridine synthase family protein			
-	3773016	3773567	552	pentapeptide repeat family protein	peg	gi|57116681|ref|NC_000962.2|_3773567_3773016		Uncharacterized low-complexity proteins		CDS	pentapeptide repeat family protein			
+	3772756	3773019	264	ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_3772762_3773019		FOG: FHA domain		CDS	FHA domain protein			
-	3773574	3774155	582	Putative ATP/GTP-binding protein	peg	gi|57116681|ref|NC_000962.2|_3774155_3773574		Predicted GTPase		CDS	elongation factor Tu GTP binding domain protein			
-	3774136	3774525	390	FIG00995222: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3774525_3774136		Protein of unknown function (DUF742).		CDS	conserved hypothetical protein			
-	3774482	3774874	393	FIG01121836: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3774862_3774482		Uncharacterized distant relative of homeotic protein bithoraxoid		CDS	roadblock/LC7 domain protein			
-	3774871	3777501	2631	putative sensor-like histidine kinase	peg	gi|57116681|ref|NC_000962.2|_3777501_3774871		Signal transduction histidine kinase		CDS	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			
+	3777737	3778201	465	tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) ## TrmL	peg	gi|57116681|ref|NC_000962.2|_3777737_3778201		Predicted rRNA methylase (SpoU class)	2.1.1.207	CDS	spoU rRNA Methylase family protein			
+	3778541	3780334	1794	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_3778541_3780334		PE family.		CDS	PE family protein			
-	3780335	3780979	645	putative oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_3780979_3780335		Nitroreductase		CDS	nitroreductase family protein			
+	3781002	3781412	411	FIG00820233: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3781002_3781412		PPOX class probable F420-dependent enzyme, Rv3369 family		CDS	pyridoxamine 5'-phosphate oxidase family protein			
-	3781501	3784776	3276	Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7)	peg	gi|57116681|ref|NC_000962.2|_3784731_3781501		error-prone DNA polymerase, DnaE-like (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III, alpha subunit	2.7.7.7	dnaE	
+	3784932	3786272	1341	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3784932_3786272		acyltransferase, WS/DGAT/MGAT		CDS	putative diacyglycerol O-acyltransferase tgs1			
+	3786314	3787489	1176	Trehalose-6-phosphate phosphatase (EC 3.1.3.12)	peg	gi|57116681|ref|NC_000962.2|_3786314_3787489		trehalose 6-phosphatase (EC 3.1.3.12)	3.1.3.12	CDS	trehalose-phosphatase	3.1.3.12	otsB	
+	3787741	3788367	627	PROBABLE ENOYL-COA HYDRATASE ECHA18 (ENOYL HYDRASE) (UNSATURATED ACYL-COA HYDRATASE) (CROTONASE)( EC:4.2.1.17 )	peg	gi|57116681|ref|NC_000962.2|_3787741_3788367		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase/isomerase family protein			
+	3788371	3788616	246	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_3788371_3788616		hypothetical protein	4.2.1.17	CDS	putative enoyl-CoA hydratase echA18_1			
+	3788609	3790048	1440	Glutamyl-tRNA(Gln) amidotransferase subunit A-like protein	peg	gi|57116681|ref|NC_000962.2|_3788621_3790048		Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	amidase family protein			
+	3790156	3790809	654	hydrolase	peg	gi|57116681|ref|NC_000962.2|_3790156_3790809		haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E		CDS	HAD hydrolase, IA, variant 1 family protein			
-	3790848	3792446	1599	Ent-copalyl diphosphate synthase	peg	gi|57116681|ref|NC_000962.2|_3792446_3790848		Squalene cyclase		CDS	prenyltransferase-like family protein			
-	3792358	3793248	891				hypothetical protein		CDS	conserved hypothetical protein			
-	3793257	3794867	1611	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	peg	gi|57116681|ref|NC_000962.2|_3794867_3793257		Deoxyxylulose-5-phosphate synthase	2.2.1.7	CDS	1-deoxy-D-xylulose-5-phosphate synthase	2.2.1.7	dxs	
+	3794896	3795060	165				hypothetical protein		CDS				
-	3795100	3795984	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3795984_3795100		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	3796035	3796361	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3796361_3796035		Transposase and inactivated derivatives		CDS	transposase family protein			
-	3796448	3797443	996	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	peg	gi|57116681|ref|NC_000962.2|_3797443_3796448		4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	1.17.1.2	CDS	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1.17.1.2	ispH	
-	3797437	3798489	1053	POSSIBLE POLYPRENYL SYNTHETASE IDSB (POLYPRENYL TRANSFERASE) (POLYPRENYL DIPHOSPHATE SYNTHASE)	peg	gi|57116681|ref|NC_000962.2|_3798390_3797437		Geranylgeranyl pyrophosphate synthase	2.5.1.10, 2.5.1.29, 2.5.1.1	CDS	putative polyprenyl synthatase			
-	3799243	3799635	393	FIG00822190: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3799635_3799243		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC46			
+	3799118	3799306	189				hypothetical protein		CDS				
-	3799635	3799910	276	FIG00821458: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3799901_3799635		prevent-host-death family protein		CDS	antitoxin VapB46		vapB46	
+	3800017	3800796	780	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3800017_3800796		transposase, IS5 family		CDS	conserved hypothetical protein			
+	3800786	3801463	678	PROBABLE TRANSPOSASE	peg	gi|57116681|ref|NC_000962.2|_3800786_3801463		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
+	3801653	3803848	2196	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_3801653_3803848		PE family.		CDS	PE family protein			
-	3803919	3804791	873	Enoyl-CoA hydratase	peg	gi|57116681|ref|NC_000962.2|_3804791_3803919		Acyl dehydratase		CDS	maoC like domain protein			
+	3804865	3805575	711	Lipoprotein LpqD	peg	gi|57116681|ref|NC_000962.2|_3804910_3805575		Fructose-2,6-bisphosphatase		CDS	histidine phosphatase super family protein			
+	3805621	3807573	1953	"Oxidoreductase, short-chain dehydrogenase/reductase family"	peg	gi|57116681|ref|NC_000962.2|_3805621_3807573		Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes		CDS	fatty acyl-CoA reductase domain protein	1.2.1.n2	acr1	
-	3807574	3808437	864	Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	peg	gi|57116681|ref|NC_000962.2|_3808437_3807574		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	cyclopropane mycolic acid synthase 1	2.1.1.79	cmaA1	
+	3808461	3809387	927	Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	peg	gi|57116681|ref|NC_000962.2|_3808461_3809387		Inosine-uridine nucleoside N-ribohydrolase	3.2.2.1	CDS	inosine-uridine preferring nucleoside hydrolase family protein			
-	3809442	3811022	1581	DNA polymerase IV-like protein ImuB	peg	gi|57116681|ref|NC_000962.2|_3810989_3809442		Nucleotidyltransferase/DNA polymerase involved in DNA repair		CDS	impB/mucB/samB family protein			
-	3811022	3811636	615	FIG00821108: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3811636_3811022		hypothetical protein		CDS	conserved hypothetical protein			
+	3811635	3812345	711	PROBABLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3811635_3812345		hypothetical protein		CDS	putative membrane protein			
-	3812501	3814078	1578	bifunctional GMP synthase/glutamine amidotransferase protein	peg	gi|57116681|ref|NC_000962.2|_3814078_3812501		GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2)	6.3.5.2	CDS	GMP synthase [glutamine-hydrolyzing]	6.3.5.2	guaA	
-	3814090	3814998	909	Phytoene synthase (EC 2.5.1.32)	peg	gi|57116681|ref|NC_000962.2|_3814998_3814090		farnesyl-diphosphate farnesyltransferase (EC 2.5.1.21)	2.5.1.32	CDS	squalene synthase HpnD	2.5.1.21	hpnD	
-	3815027	3816106	1080	polyprenyl diphosphate synthase	peg	gi|57116681|ref|NC_000962.2|_3816106_3815027		Geranylgeranyl pyrophosphate synthase	2.5.1.1, 2.5.1.10, 2.5.1.29	CDS	putative polyprenyl synthatase			
+	3816255	3817175	921	O-Methyltransferase involved in polyketide biosynthesis	peg	gi|57116681|ref|NC_000962.2|_3816255_3817175		methyltransferase, putative, TIGR00027 family		CDS	methyltransferase, TIGR00027 family protein	2.1.1.-		
+	3817239	3818027	789	"Hydrolase, haloacid dehalogenase-like family"	peg	gi|57116681|ref|NC_000962.2|_3817284_3818027		haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase		CDS	HAD hydrolase, IA, variant 3 family protein			
+	3818042	3820402	2361	Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)	peg	gi|57116681|ref|NC_000962.2|_3818042_3820402		Trehalose and maltose hydrolases (possible phosphorylases)		CDS	glycosyl hydrolase family 65 central catalytic domain protein			
-	3820448	3820660	213				hypothetical protein		CDS	conserved hypothetical protein			
-	3820653	3821891	1239	DegT/DnrJ/EryC1 family protein	peg	gi|57116681|ref|NC_000962.2|_3821819_3820653		Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis		CDS	degT/DnrJ/EryC1/StrS aminotransferase family protein			
-	3822262	3823863	1602	"Zn-dependent hydrolases, including glyoxylases"	peg	gi|57116681|ref|NC_000962.2|_3823836_3822262		Uncharacterized protein conserved in bacteria		CDS	FAD-NAD(P)-binding family protein			
-	3823880	3824584	705	Methionyl-tRNA formyltransferase	peg	gi|57116681|ref|NC_000962.2|_3824584_3823880		Methionyl-tRNA formyltransferase		CDS	formyl transferase family protein			
-	3824702	3825268	567	"Transcriptional regulator, TetR family"	peg	gi|57116681|ref|NC_000962.2|_3825235_3824702		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	3825330	3826217	888	Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17)	peg	gi|57116681|ref|NC_000962.2|_3825330_3826217		Probable taurine catabolism dioxygenase	1.14.11.17	CDS	alpha-ketoglutarate-dependent taurine dioxygenase	1.14.11.17		
+	3826375	3826551	177	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3826375_3826551		hypothetical protein		CDS	antitoxin VapB47		vapB47	
+	3826548	3826958	411	FIG00822687: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3826557_3826958		Predicted nucleic acid-binding protein, contains PIN domain		CDS	putative ribonuclease VapC47			
-	3826991	3828727	1737	Cholesterol oxidase (EC 1.1.3.6)	peg	gi|57116681|ref|NC_000962.2|_3828727_3826991		Choline dehydrogenase and related flavoproteins	1.1.3.6	CDS	cholesterol oxidase	1.1.3.6	choD	
-	3828783	3829910	1128	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	peg	gi|57116681|ref|NC_000962.2|_3829910_3828783		IMP dehydrogenase family protein	1.1.1.205	CDS	conserved hypothetical protein			
-	3829930	3831519	1590	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	peg	gi|57116681|ref|NC_000962.2|_3831507_3829930		inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	1.1.1.205	CDS	inosine-5'-monophosphate dehydrogenase	1.1.1.205	guaB	
+	3831726	3832136	411	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3831726_3832136		hypothetical protein		CDS	conserved hypothetical protein			
-	3832146	3833045	900	FIG00997706: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3833045_3832146		hypothetical protein		CDS	conserved hypothetical protein			
-	3833038	3833613	576	RNA polymerase sigma-70 factor	peg	gi|57116681|ref|NC_000962.2|_3833613_3833038		RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma factor, sigma-70 family protein			
-	3833694	3834485	792	FIG00996157: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3834485_3833694		hypothetical protein		CDS	conserved hypothetical protein			
+	3834892	3835200	309	Sporulation regulatory protein WhiD	peg	gi|57116681|ref|NC_000962.2|_3834892_3835200		Transcription factor WhiB.		CDS	transcription factor WhiB family protein			
-	3835272	3836891	1620	Heat shock protein 60 family chaperone GroEL	peg	gi|57116681|ref|NC_000962.2|_3836891_3835272		chaperonin GroL		CDS	chaperonin GroL		groL	
-	3836986	3837288	303	Heat shock protein 60 family co-chaperone GroES	peg	gi|57116681|ref|NC_000962.2|_3837288_3836986		Co-chaperonin GroES (HSP10)		CDS	10 kDa chaperonin		groS	
-	3837555	3838589	1035	"TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA"	peg	gi|57116681|ref|NC_000962.2|_3838577_3837555		O-sialoglycoprotein endopeptidase (EC 3.4.24.57)	3.4.24.57	CDS	metallohydrolase, glycoprotease/Kae1 family protein			
-	3838586	3839062	477	Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	peg	gi|57116681|ref|NC_000962.2|_3839062_3838586		ribosomal-protein-alanine acetyltransferase	2.3.1.128	CDS	ribosomal-protein-alanine acetyltransferase	2.3.1.128	rimI	
-	3839059	3839694	636	"Inactive homolog of metal-dependent proteases, putative molecular chaperone"	peg	gi|57116681|ref|NC_000962.2|_3839685_3839059		universal bacterial protein YeaZ		CDS	glycoprotease family protein			
-	3839691	3840197	507	"ATPase YjeE, predicted to have essential role in cell wall biosynthesis"	peg	gi|57116681|ref|NC_000962.2|_3840197_3839691		ATPase, YjeE family		CDS	conserved hypothetical protein			
-	3840194	3841420	1227	Alanine racemase (EC 5.1.1.1)	peg	gi|57116681|ref|NC_000962.2|_3841420_3840194		alanine racemase (EC 5.1.1.1)	5.1.1.1	CDS	alanine racemase	5.1.1.1	alr	
+	3842239	3842769	531	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3842248_3842769		PPE family.		CDS	PPE family protein			
-	3843514	3843780	267	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3843765_3843514					putative predicted protein			
+	3843036	3843734	699				PPE family.		CDS				
-	3843885	3844640	756	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3844640_3843885		DNA replication protein		CDS	istB-like ATP binding family protein			
-	3844738	3845970	1233	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3845970_3844738		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	3846053	3846250	198	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3846250_3846053		hypothetical protein		CDS	putative predicted protein			
-	3847642	3848805	1164	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3848805_3847642		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	3847165	3847701	537				PPE family.		CDS				
-	3848844	3848999	156	FIG00822099: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3848999_3848844					putative predicted protein			
-	3849024	3849188	165	FIG00825126: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3849188_3849024		hypothetical protein		CDS	transposase of ISCARN54, ORFA, IS3 family IS3 group			
-	3849294	3850139	846	Transposase	peg	gi|57116681|ref|NC_000962.2|_3850139_3849294		Transposase and inactivated derivatives		CDS	transposase, Mutator family protein			
-	3850372	3851754	1383	GadB( EC:4.1.1.15 )	peg	gi|57116681|ref|NC_000962.2|_3851754_3850372		glutamate decarboxylase (EC 4.1.1.15)	4.1.1.15	CDS	glutamate decarboxylase	4.1.1.15		
-	3851792	3853213	1422	NAD(P)HX epimerase / NAD(P)HX dehydratase	peg	gi|57116681|ref|NC_000962.2|_3853213_3851792		yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region		CDS	yjeF-related family protein			
-	3853215	3853928	714	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3853913_3853215		hypothetical protein		CDS	putative membrane protein			
-	3853939	3854877	939	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3854754_3853939		hypothetical protein		CDS	putative cONSERVED TRANSMEMBRANE PROTEIN			
-	3854798	3854959	162	FIG00820835: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3854959_3854798								
-	3855015	3856889	1875	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	peg	gi|57116681|ref|NC_000962.2|_3856889_3855015		glutamine--fructose-6-phosphate transaminase	2.6.1.16	CDS	glutamine-fructose-6-phosphate transaminase	2.6.1.16	glmS	
+	3856911	3857387	477	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3856986_3857387		Protein of unknown function (DUF2510).		CDS	conserved hypothetical protein			
+	3857397	3858239	843	FIG00996653: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3857397_3858239		Dienelactone hydrolase and related enzymes		CDS	dienelactone hydrolase family protein			
-	3858259	3859689	1431	Conserved alanine and proline rich protein	peg	gi|57116681|ref|NC_000962.2|_3859662_3858259		hypothetical protein		CDS	putative conserved alanine and proline rich protein			
-	3859665	3859976	312	FIG00820542: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3859976_3859665		hypothetical protein		CDS	conserved hypothetical protein			
-	3860024	3861370	1347	Phosphoglucosamine mutase (EC 5.4.2.10)	peg	gi|57116681|ref|NC_000962.2|_3861370_3860024		phosphoglucosamine mutase (EC 5.4.2.10)	5.4.2.10	CDS	phosphoglucosamine mutase	5.4.2.10	glmM	
-	3861495	3861950	456	SSU ribosomal protein S9p (S16e)	peg	gi|57116681|ref|NC_000962.2|_3861950_3861495		SSU ribosomal protein S9P		CDS	30S ribosomal protein S9		rpsI	
-	3861947	3862390	444	LSU ribosomal protein L13p (L13Ae)	peg	gi|57116681|ref|NC_000962.2|_3862390_3861947		LSU ribosomal protein L13P		CDS	ribosomal protein L13		rplM	
-	3862624	3862926	303	probable secreted protein	peg	gi|57116681|ref|NC_000962.2|_3862911_3862624		WXG100 family type VII secretion target		CDS	WXG100 type VII secretion target family protein			
-	3862947	3863378	432	ESAT-6 like protein EsxU	peg	gi|57116681|ref|NC_000962.2|_3863264_3862947		Uncharacterized protein conserved in bacteria		CDS	s of 100 residues with WXG family protein			
-	3863317	3864531	1215	Type VII secretion-associated protein	peg	gi|57116681|ref|NC_000962.2|_3864531_3863317		type VII secretion-associated protein, Rv3446c family, C-terminal domain		CDS	conserved hypothetical protein			
-	3864528	3868238	3711	FtsK/SpoIIIE family protein	peg	gi|57116681|ref|NC_000962.2|_3868043_3864528		type VII secretion protein EccCa/type VII secretion protein EccCb		CDS	type VII secretion protein EccCb		eccCb	
+	3868072	3868365	294	FIG00824274: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3868072_3868365					hypothetical protein			
+	3868352	3869755	1404	PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3868352_3869755		type VII secretion integral membrane protein EccD		CDS	type VII secretion integral membrane protein EccD		eccD	
-	3871084	3872496	1413	PROBABLE CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3872496_3871084		type VII secretion protein EccB, Actinobacterial		CDS	type VII secretion protein EccB		eccB	
+	3869746	3871119	1374	subtilase family protein	peg	gi|57116681|ref|NC_000962.2|_3869746_3871119		type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	
+	3872617	3873405	789	"serine esterase, cutinase family"	peg	gi|57116681|ref|NC_000962.2|_3872617_3873405		Cutinase.	3.1.1.74	CDS	cutinase family protein			
+	3873452	3874132	681	"serine esterase, cutinase family"	peg	gi|57116681|ref|NC_000962.2|_3873452_3874132		Cutinase.	3.1.1.-	CDS	cutinase family protein			
+	3874404	3874736	333	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3874404_3874736		hypothetical protein		CDS	putative membrane protein			
-	3876052	3876945	894	tRNA pseudouridine synthase A (EC 4.2.1.70)	peg	gi|57116681|ref|NC_000962.2|_3876822_3876052		pseudouridylate synthase I	5.4.99.12	CDS	tRNA pseudouridine synthase family protein			
+	3874759	3876090	1332	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3874759_3876090		Purine-cytosine permease and related proteins		CDS	putative membrane protein			
-	3876890	3877432	543	LSU ribosomal protein L17p	peg	gi|57116681|ref|NC_000962.2|_3877432_3876890		LSU ribosomal protein L17P		CDS	ribosomal protein L17		rplQ	
-	3877464	3878507	1044	DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)	peg	gi|57116681|ref|NC_000962.2|_3878507_3877464		DNA-directed RNA polymerase subunit alpha (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase, alpha subunit	2.7.7.6	rpoA	
-	3878659	3879264	606	SSU ribosomal protein S4p (S9e)	peg	gi|57116681|ref|NC_000962.2|_3879264_3878659		SSU ribosomal protein S4P		CDS	ribosomal protein S4		rpsD	
-	3879273	3879692	420	SSU ribosomal protein S11p (S14e)	peg	gi|57116681|ref|NC_000962.2|_3879692_3879273		SSU ribosomal protein S11P		CDS	30S ribosomal protein S11		rpsK	
-	3879696	3880070	375	SSU ribosomal protein S13p (S18e)	peg	gi|57116681|ref|NC_000962.2|_3880070_3879696		SSU ribosomal protein S13P		CDS	30S ribosomal protein S13		rpsM	
-	3880432	3880653	222	Translation initiation factor 1	peg	gi|57116681|ref|NC_000962.2|_3880653_3880432		bacterial translation initiation factor 1 (bIF-1)		CDS	translation initiation factor IF-1		infA	
+	3880907	3881764	858	"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"	peg	gi|57116681|ref|NC_000962.2|_3880907_3881764		probable F420-dependent oxidoreductase, MSMEG_4141 family		CDS	putative F420-dependent oxidoreductase, MSMEG_4141 family protein			
+	3881837	3882832	996	"dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)"	peg	gi|57116681|ref|NC_000962.2|_3881837_3882832		dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	4.2.1.46	CDS	dTDP-glucose 4,6-dehydratase	4.2.1.46	rfbB	
+	3882834	3883442	609	"dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)"	peg	gi|57116681|ref|NC_000962.2|_3882834_3883442		dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	5.1.3.13	CDS	dTDP-4-dehydrorhamnose 3,5-epimerase	5.1.3.13	rfbC	
+	3883958	3884917	960	Partial REP13E12 repeat protein	peg	gi|57116681|ref|NC_000962.2|_3883958_3884917		Domain of unknown function (DUF222).		CDS	conserved hypothetical protein			
-	3884975	3886069	1095	UDP-glucose 4-epimerase (EC 5.1.3.2)	peg	gi|57116681|ref|NC_000962.2|_3886069_3884975		Nucleoside-diphosphate-sugar epimerases	4.2.1.46	CDS	polysaccharide biosynthesis family protein			
-	3886073	3887083	1011	4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	peg	gi|57116681|ref|NC_000962.2|_3887014_3886073		Isopropylmalate/homocitrate/citramalate synthases	4.1.3.39	CDS	HMGL-like family protein			
-	3887144	3888817	1674	Acetohydroxy acid synthase	peg	gi|57116681|ref|NC_000962.2|_3888802_3887144		Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]	2.2.1.6	CDS	thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			
-	3888808	3889293	486	Mannose-6-phosphate isomerase	peg	gi|57116681|ref|NC_000962.2|_3889293_3888808		Mannose-6-phosphate isomerase		CDS	cupin domain protein			
+	3889362	3889868	507	FIG00820398: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3889362_3889868		SnoaL-like domain.		CDS	snoaL-like domain protein			
-	3889948	3890733	786	Peroxidase BpoA	peg	gi|57116681|ref|NC_000962.2|_3890733_3889948		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
+	3890830	3891156	327	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3890830_3891156		Transposase and inactivated derivatives		CDS	transposase family protein			
+	3891207	3892091	885	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_3891207_3892091		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	3892371	3893768	1398	dicarboxylic acid transporter PcaT	peg	gi|57116681|ref|NC_000962.2|_3893768_3892371		Arabinose efflux permease		CDS	sugar (and other) transporter family protein			
+	3894093	3894389	297	PE family protein	peg	gi|57116681|ref|NC_000962.2|_3894093_3894389		PE family.		CDS	PE family protein			
+	3894426	3895607	1182	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3894426_3895607		PPE-repeat proteins		CDS	PPE family protein			
+	3895637	3898885	3249	POSSIBLE TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3895637_3898885		patatin-related protein		CDS	patatin-related domain protein			
-	3898909	3900402	1494	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_3900402_3898909		acyltransferase, WS/DGAT/MGAT		CDS	putative diacyglycerol O-acyltransferase tgs2			
-	3900493	3901239	747	PROBABLE INTEGRAL MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3901239_3900493		Protein of unknown function (DUF2910).		CDS	conserved hypothetical protein			
-	3901324	3902106	783	PROBABLE CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3902106_3901324		hypothetical protein		CDS	conserved hypothetical protein			
-	3902150	3902812	663	Lipoprotein LppP/LprE	peg	gi|57116681|ref|NC_000962.2|_3902695_3902150		LppP/LprE lipoprotein.		CDS	lppP/LprE lipofamily protein			
+	3903078	3904616	1539	"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)"	peg	gi|57116681|ref|NC_000962.2|_3903171_3904616		transcriptional attenuator, LytR family		CDS	cell envelope-related function transcriptional attenuator common domain protein			
-	3904622	3905566	945	short chain dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_3905503_3904622		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	polysaccharide biosynthesis family protein			
-	3906174	3907157	984	putative esterase	peg	gi|57116681|ref|NC_000962.2|_3907031_3906174		Esterase/lipase		CDS	alpha/beta hydrolase fold family protein			
+	3905730	3906221	492	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3905826_3906221		Predicted membrane protein		CDS	doxX-like family protein			
+	3907667	3907990	324	"Transcriptional regulator, PadR family"	peg	gi|57116681|ref|NC_000962.2|_3907667_3907990		Predicted transcriptional regulators		CDS	transcriptional regulator PadR-like family protein			
+	3908072	3908236	165	FIG00820754: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3908072_3908236		hypothetical protein		CDS	conserved hypothetical protein			
+	3908236	3909738	1503	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15)"	peg	gi|57116681|ref|NC_000962.2|_3908302_3909738		trehalose 6-phosphate synthase (EC 2.4.1.15)	2.4.1.15	CDS	trehalose-phosphate synthase	2.4.1.-	otsA	
-	3910465	3910947	483	MCE-associated transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_3910938_3910465		Macrophage killing protein with similarity to conjugation protein.		CDS	macrophage killing with similarity to conjugation family protein			
+	3909890	3910468	579	FIG00820113: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3909890_3910468		hypothetical protein		CDS	conserved hypothetical protein			
-	3910947	3911675	729	MCE-associated alanine and valine rich protein	peg	gi|57116681|ref|NC_000962.2|_3911417_3910947		hypothetical protein		CDS	putative mCE associated alanine and valine rich protein			
-	3911675	3913369	1695	MCE-family protein Mce1F	peg	gi|57116681|ref|NC_000962.2|_3913369_3911675		virulence factor Mce family protein		CDS	mce related family protein			
-	3913380	3914534	1155	MCE-family lipoprotein LprK (MCE-family lipoprotein Mce1e)	peg	gi|57116681|ref|NC_000962.2|_3914534_3913380		virulence factor Mce family protein		CDS	mce related family protein			
-	3914531	3915886	1356	MCE-family protein Mce1D	peg	gi|57116681|ref|NC_000962.2|_3915886_3914531		virulence factor Mce family protein		CDS	conserved hypothetical protein			
-	3915883	3916956	1074	MCE-family protein Mce1C	peg	gi|57116681|ref|NC_000962.2|_3916956_3915883		virulence factor Mce family protein		CDS	conserved hypothetical protein			
-	3916946	3917998	1053	MCE-family protein Mce1B	peg	gi|57116681|ref|NC_000962.2|_3917998_3916946		virulence factor Mce family protein		CDS	mce related family protein			
-	3917998	3919200	1203	MCE-family protein Mce1A	peg	gi|57116681|ref|NC_000962.2|_3919200_3917998		ABC-type transport system involved in resistance to organic solvents, periplasmic component		CDS	mce related family protein			
-	3919220	3920062	843	Conserved hypothetical integral membrane protein YrbE1B	peg	gi|57116681|ref|NC_000962.2|_3920062_3919220		ABC-type transport system involved in resistance to organic solvents, permease component		CDS	permease family protein			
-	3920097	3920861	765	Conserved hypothetical integral membrane protein YrbE1A	peg	gi|57116681|ref|NC_000962.2|_3920861_3920097		ABC-type transport system involved in resistance to organic solvents, permease component		CDS	permease family protein			
-	3921087	3922040	954	Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_3922040_3921087		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.100	CDS	short chain dehydrogenase			
-	3922065	3922256	192	Ferredoxin	peg	gi|57116681|ref|NC_000962.2|_3922256_3922065		Ferredoxin		CDS	conserved hypothetical protein			
+	3922471	3923673	1203	FadE30	peg	gi|57116681|ref|NC_000962.2|_3922471_3923673		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, N-terminal domain protein			
+	3923698	3924819	1122	"Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)"	peg	gi|57116681|ref|NC_000962.2|_3923698_3924819		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	3924890	3926398	1509	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_3924890_3926398		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	long-chain-fatty-acid--CoA ligase FadD17	6.2.1.3	fadD17	
+	3926569	3930714	4146	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3926569_3930714		PE family.		CDS	PE family protein			
+	3931005	3936710	5706	PE-PGRS virulence associated protein	peg	gi|57116681|ref|NC_000962.2|_3931005_3936710		PE family.		CDS	PE family protein			
-	3936877	3938424	1548	COG0028: Thiamine pyrophosphate-requiring enzymes	peg	gi|57116681|ref|NC_000962.2|_3938424_3936877		Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]	2.2.1.6	CDS	thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			
-	3938421	3939257	837	PROBABLE ANTIBIOTIC-RESISTANCE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3939257_3938421		Predicted metal-dependent hydrolase of the TIM-barrel fold		CDS	amidohydrolase family protein			
-	3941721	3943058	1338	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3943058_3941721		hypothetical protein		CDS	hypothetical protein			
+	3939617	3941761	2145	PE-PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_3939617_3941761		PE family.		CDS	PE family protein			
-	3943098	3945074	1977	Merozoite surface protein 2	peg	gi|57116681|ref|NC_000962.2|_3943379_3943098		hypothetical protein		CDS	hypothetical protein			
-	3943406	3943813	408	"peptidase C14, caspase catalytic subunit p20"	peg	gi|57116681|ref|NC_000962.2|_3943813_3943406					hypothetical protein			
+	3943812	3944963	1152	PE-PGRS virulence associated protein	peg	gi|57116681|ref|NC_000962.2|_3943812_3944963					hypothetical protein			
-	3945092	3945616	525	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_3945616_3945092					AMP-binding enzyme family protein			
+	3945110	3945712	603				hypothetical protein		CDS				
+	3945794	3950263	4470	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_3945794_3950263					PE family protein			
-	3950824	3952470	1647	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_3952464_3950824		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	long-chain-fatty-acid--CoA ligase FadD19	6.2.1.3	fadD19	
+	3950294	3950902	609				hypothetical protein		CDS				
+	3952526	3953335	810	Enoyl-CoA hydratase (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_3952526_3953335		short chain enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	enoyl-CoA hydratase EchA1		echA1	
+	3953431	3954270	840	FIG00821502: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3953431_3954270		Domain of unknown function (DUF4095).		CDS	conserved hypothetical protein			
-	3954325	3955521	1197	putative cytochrome P450 hydroxylase	peg	gi|57116681|ref|NC_000962.2|_3955521_3954325		Cytochrome P450		CDS	putative cytochrome P450 142			
+	3955541	3956260	720	Acetoacetate decarboxylase family protein	peg	gi|57116681|ref|NC_000962.2|_3955541_3956260		Acetoacetate decarboxylase (ADC).		CDS	acetoacetate decarboxylase family protein			
-	3956325	3957356	1032	Coenzyme F420-dependent oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_3957356_3956325		probable F420-dependent oxidoreductase, Rv3520c family		CDS	putative F420-dependent oxidoreductase, Rv3520c family protein			
+	3957428	3958432	1005	FIG00996312: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3957428_3958432		Predicted nucleic-acid-binding protein containing a Zn-ribbon		CDS	conserved hypothetical protein			
+	3958448	3959512	1065	Lipid-transfer protein	peg	gi|57116681|ref|NC_000962.2|_3958448_3959512		Acetyl-CoA acetyltransferase		CDS	putative lipid transfer protein/keto acyl-CoA thiolase Ltp4			
+	3959529	3960713	1185	3-ketoacyl-CoA thiolase	peg	gi|57116681|ref|NC_000962.2|_3959529_3960713		Acetyl-CoA acetyltransferase	2.3.1.9	CDS	putative lipid carrier protein/keto acyl-CoA thiolase Ltp3			
+	3960860	3961786	927	Serine/threonine protein kinase (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_3961052_3961786		NHL repeat.		CDS	NHL repeat family protein			
-	3961800	3962324	525	"carbonic anhydrase, family 3"	peg	gi|57116681|ref|NC_000962.2|_3962324_3961800		Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily		CDS	bacterial transferase hexapeptide family protein			
+	3962439	3963599	1161	Terminal oxygenase KshA	peg	gi|57116681|ref|NC_000962.2|_3962544_3963599		Rieske [2Fe-2S] domain.		CDS	3-ketosteroid-9-alpha-hydroxylase oxygenase subunit	1.17.1.-	kshA	
+	3963605	3964054	450	FIG00820011: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3963605_3964054		hypothetical protein		CDS	conserved hypothetical protein			
-	3964479	3965189	711	FIG00820460: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3965012_3964479		hypothetical protein		CDS	putative methyltransferase			
+	3965423	3965620	198	FIG00821812: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3965444_3965620		hypothetical protein		CDS	transposase domain protein			
+	3965625	3965822	198	FIG00822113: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3965625_3965822					transposase domain protein			
-	3965884	3967038	1155	FIG00994930: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3967011_3965884		Sulfotransferase family.		CDS	sulfotransferase domain protein			
-	3967038	3967820	783	short chain dehydrogenase	peg	gi|57116681|ref|NC_000962.2|_3967820_3967038		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
-	3967817	3968944	1128	FIG00994788: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_3968944_3967817		Protein of unknown function (DUF1214).		CDS	conserved hypothetical protein			
+	3969343	3970563	1221	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3969343_3970563		PPE-repeat proteins		CDS	PPE family protein			
-	3970705	3972453	1749	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3972453_3970705		PPE-repeat proteins		CDS	PPE family protein			
-	3972552	3973592	1041	4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	peg	gi|57116681|ref|NC_000962.2|_3973592_3972552		4-hydroxy-2-oxovalerate aldolase	4.1.3.39	CDS	4-hydroxy-2-oxovalerate aldolase	4.1.3.39	dmpG	
-	3973589	3974500	912	"Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol"	peg	gi|57116681|ref|NC_000962.2|_3974500_3973589		acetaldehyde dehydrogenase (EC 1.2.1.10)	1.2.1.10	CDS	acetaldehyde dehydrogenase	1.2.1.10		
-	3974511	3975296	786	2-keto-4-pentenoate hydratase	peg	gi|57116681|ref|NC_000962.2|_3975296_3974511		2-keto-4-pentenoate hydratase	4.2.1.80	CDS	fumarylacetoacetate (FAA) hydrolase family protein			
+	3975360	3977060	1701	3-oxosteroid 1-dehydrogenase (EC 1.3.99.4)	peg	gi|57116681|ref|NC_000962.2|_3975360_3977060		Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	1.3.99.4	CDS	3-oxosteroid 1-dehydrogenase	1.3.99.4	kstD	
+	3977062	3977922	861	Enoyl-CoA hydratase	peg	gi|57116681|ref|NC_000962.2|_3977062_3977922		Acyl dehydratase		CDS	maoC like domain protein			
+	3978059	3979498	1440	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3978059_3979498		PPE-repeat proteins		CDS	PPE family protein			
-	3979499	3980659	1161	Lipid carrier protein IgrF	peg	gi|57116681|ref|NC_000962.2|_3980659_3979499		Acetyl-CoA acetyltransferase		CDS	putative exopolyphosphatase			
-	3980659	3981048	390	Enoyl coenzyme A hydratase IgrE	peg	gi|57116681|ref|NC_000962.2|_3981030_3980659		hypothetical protein		CDS	maoC like domain protein			
-	3981045	3981980	936	Conserved protein IgrD	peg	gi|57116681|ref|NC_000962.2|_3981971_3981045		Predicted nucleic-acid-binding protein containing a Zn-ribbon		CDS	conserved hypothetical protein			
-	3981977	3983140	1164	Probable acyl-CoA dehydrogenase FadE29 (EC 1.3.99.-); Acyl-CoA dehydrogenase IgrC	peg	gi|57116681|ref|NC_000962.2|_3983140_3981977		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
-	3983125	3984144	1020	Probable acyl-CoA dehydrogenase FadE28 (EC 1.3.99.-); Acyl-CoA dehydrogenase IgrB	peg	gi|57116681|ref|NC_000962.2|_3984144_3983125		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
-	3984144	3985397	1254	Putative cytochrome P450 125 (EC 1.14.-.-); Putative cytochrome P450 IgrA	peg	gi|57116681|ref|NC_000962.2|_3985397_3984144		Cytochrome P450		CDS	steroid C27-monooxygenase	1.14.13.-	cyp125	
+	3985557	3986732	1176	Probable acetyl-CoA acetyltransferase FadA5 (EC 2.3.1.9)	peg	gi|57116681|ref|NC_000962.2|_3985557_3986732		acetyl-CoA acetyltransferases	2.3.1.9	CDS	acetyl-CoA C-acetyltransferase family protein			
+	3986844	3987299	456	Putative uncharacterized protein BCG_3611	peg	gi|57116681|ref|NC_000962.2|_3986844_3987299		deazaflavin-dependent nitroreductase family protein		CDS	deazaflavin-dependent nitroreductase	1.-.-.-	ddn	
-	3987382	3988296	915	Putative uncharacterized protein (Hypothetical short-chain type dehydrogenase/reductase)	peg	gi|57116681|ref|NC_000962.2|_3988296_3987382		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase			
-	3988319	3989098	780	Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_3989098_3988319		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
+	3989153	3989896	744	Probable enoyl-CoA hydratase EchA20 (EC 4.2.1.17)	peg	gi|57116681|ref|NC_000962.2|_3989153_3989896		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase/isomerase family protein			
+	3989896	3990774	879	Putative CoA-transferase subunit alpha Rv3551/MT3655 (EC 2.8.3.-)	peg	gi|57116681|ref|NC_000962.2|_3989896_3990774		Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit		CDS	coenzyme A transferase family protein			
+	3990771	3991523	753	Putative CoA-transferase subunit beta Rv3552/MT3656 (EC 2.8.3.-)	peg	gi|57116681|ref|NC_000962.2|_3990771_3991523		Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit		CDS	putative 3-oxoadipate CoA-transferase			
+	3991621	3992688	1068	2-nitropropane dioxygenase (EC 1.13.11.32)	peg	gi|57116681|ref|NC_000962.2|_3991621_3992688		Dioxygenases related to 2-nitropropane dioxygenase		CDS	nitronate monooxygenase family protein			
+	3992724	3994742	2019	Possible electron transfer protein FdxB (EC 1.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_3992739_3994742		Fatty acid desaturase		CDS	2Fe-2S iron-sulfur cluster binding domain protein			
-	3994830	3995705	876	Putative uncharacterized protein BCG_3619c	peg	gi|57116681|ref|NC_000962.2|_3995705_3994830		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3995804	3996964	1161	Probable acetyl-CoA acetyltransferase FadA6 (EC 2.3.1.9)	peg	gi|57116681|ref|NC_000962.2|_3996964_3995804		acetyl-CoA acetyltransferases	2.3.1.9	CDS	acetyl-CoA C-acetyltransferase family protein			
-	3997029	3997631	603	"Transcriptional factor in putative operon for degradation of branched-chain alkanes, nitroalkanes and may be also cyclic ketones, alkenoic acids"	peg	gi|57116681|ref|NC_000962.2|_3997622_3997029		transcriptional regulator, TetR family		CDS	HTH-type transcriptional repressor KstR2		kstR2	
+	3997980	3999638	1659	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_3997980_3999638		PPE-repeat proteins		CDS	PPE family protein			
-	3999647	4000435	789	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|57116681|ref|NC_000962.2|_4000435_3999647		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.100	CDS	short chain dehydrogenase			
-	4000432	4001589	1158	FadE30	peg	gi|57116681|ref|NC_000962.2|_4001589_4000432		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	4001637	4003160	1524	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_4001637_4003160		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	AMP-binding enzyme family protein			
+	4003161	4004294	1134	"Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)"	peg	gi|57116681|ref|NC_000962.2|_4003161_4004294		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	4004297	4005250	954	Acyl-CoA dehydrogenase FadE32	peg	gi|57116681|ref|NC_000962.2|_4004297_4005250		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	4005247	4006203	957	Acyl-CoA dehydrogenase FadE33	peg	gi|57116681|ref|NC_000962.2|_4005271_4006203		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
-	4007331	4008182	852	Arylamine N-acetyltransferase (EC 2.3.1.5)	peg	gi|57116681|ref|NC_000962.2|_4008182_4007331		Arylamine N-acetyltransferase	2.3.1.5	CDS	arylamine N-acetyltransferase	2.3.1.5	nat	
+	4006200	4007366	1167	Valine--pyruvate aminotransferase (EC 2.6.1.66) ## AvtA	peg	gi|57116681|ref|NC_000962.2|_4006200_4007366		Aspartate/tyrosine/aromatic aminotransferase		CDS	aminotransferase class I and II family protein			
+	4008176	4008448	273	FIG00824752: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4008176_4008448					hypothetical protein			
-	4008464	4008634	171	FIG00822596: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4008634_4008464					arylamine N-acetyltransferase nat domain protein		nat	
-	4008719	4009282	564	Nitrilotriacetate monooxygenase component B (EC 1.14.13.-)	peg	gi|57116681|ref|NC_000962.2|_4009282_4008719		Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	flavin-dependent monooxygenase, reductase subunit	1.5.1.-	hsaB	
-	4009297	4010199	903	"PUTATIVE BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE BPHC (23OHBP OXYGENASE) (2,3-DIHYDROXYBIPHENYL DIOXYGENASE) (2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE) (DHBD)( EC:1.13.11.39 )"	peg	gi|57116681|ref|NC_000962.2|_4010199_4009297		Predicted ring-cleavage extradiol dioxygenase	1.13.11.25	CDS	iron-dependent extradiol dioxygenase	1.13.11.-	hsaC	
-	4010196	4011071	876	"2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-)"	peg	gi|57116681|ref|NC_000962.2|_4011071_4010196		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	4,5-9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase	3.7.1.8	hsaD	
-	4011086	4012270	1185	POSSIBLE OXIDOREDUCTASE	peg	gi|57116681|ref|NC_000962.2|_4012270_4011086		Acyl-CoA dehydrogenases		CDS	flavin-dependent monooxygenase, oxygenase subunit	1.14.14.-	hsaA	
+	4012417	4013493	1077	"Phenylacetate-CoA oxygenase/reductase, PaaK subunit"	peg	gi|57116681|ref|NC_000962.2|_4012417_4013493		Flavodoxin reductases (ferredoxin-NADPH reductases) family 1		CDS	3-ketosteroid-9-alpha-hydroxylase reductase subunit	1.17.1.-	hmp	
+	4013511	4014041	531	FIG00821138: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4013511_4014041		hypothetical protein		CDS	conserved hypothetical protein			
-	4014077	4016212	2136	Acyl-CoA dehydrogenase (EC 1.3.99.-)	peg	gi|57116681|ref|NC_000962.2|_4016212_4014077		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	4016421	4017083	663	"Transcriptional regulator kstR (Rv3574), TetR family"	peg	gi|57116681|ref|NC_000962.2|_4016484_4017083		transcriptional regulator, TetR family		CDS	HTH-type transcriptional repressor KstR		kstR	
-	4017089	4018168	1080	"Transcriptional regulator, LacI family"	peg	gi|57116681|ref|NC_000962.2|_4018042_4017089		transcriptional regulator, LacI family		CDS	periplasmic binding s and sugar binding domain of LacI family protein			
+	4018101	4018274	174	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4018101_4018274								
+	4018358	4019071	714	Serine/threonine protein kinase (EC 2.7.11.1)	peg	gi|57116681|ref|NC_000962.2|_4018358_4019071		PknH-like extracellular domain.		CDS	pknH-like extracellular domain protein			
+	4019208	4020128	921	Zn-dependent hydrolases of the beta-lactamase fold	peg	gi|57116681|ref|NC_000962.2|_4019262_4020128		Predicted Zn-dependent hydrolases of the beta-lactamase fold		CDS	beta-lactamase superfamily domain protein			
+	4020142	4021383	1242	Arsenic efflux pump protein	peg	gi|57116681|ref|NC_000962.2|_4020142_4021383		arsenite efflux membrane protein ArsB (TC 3.A.4.1.1; TC 2.A.45.1.1)		CDS	citrate transporter family protein			
-	4021425	4022393	969	23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_4022393_4021425		rRNA methylase, putative, group 3	2.1.1.185	CDS	RNA 2'-O ribose methyltransferase substrate binding family protein			
-	4022394	4023803	1410	Cysteinyl-tRNA synthetase (EC 6.1.1.16)	peg	gi|57116681|ref|NC_000962.2|_4023803_4022394		cysteinyl-tRNA synthetase (EC 6.1.1.16)	6.1.1.16	CDS	cysteine--tRNA ligase	6.1.1.16	cysS	
-	4023868	4024347	480	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)"	peg	gi|57116681|ref|NC_000962.2|_4024269_4023868		2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	4.6.1.12	CDS	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	ispF	
-	4024344	4025039	696	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	peg	gi|57116681|ref|NC_000962.2|_4025039_4024344		2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60	CDS	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60	ispD	
-	4025056	4025544	489	CarD-like transcriptional regulator	peg	gi|57116681|ref|NC_000962.2|_4025544_4025056		transcriptional regulator, CarD family		CDS	carD-like/TRCF domain protein			
+	4025830	4026378	549	Lipoprotein LpqE	peg	gi|57116681|ref|NC_000962.2|_4025830_4026378		hypothetical protein		CDS	putative lipoprotein lpqE			
+	4026555	4027886	1332	DNA repair protein RadA	peg	gi|57116681|ref|NC_000962.2|_4026591_4027886		DNA repair protein RadA		CDS	DNA repair protein RadA		radA	
+	4027891	4028967	1077	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4027900_4028967		Predicted nucleic-acid-binding protein (contains the HHH domain)		CDS	disA bacterial checkpoint controller linker region family protein			
-	4028968	4029786	819	FIG00820636: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4029762_4028968		hypothetical protein		CDS	putative cONSERVED MEMBRANE PROTEIN			
-	4029871	4030494	624	Carbonic anhydrase (EC 4.2.1.1)	peg	gi|57116681|ref|NC_000962.2|_4030494_4029871		Carbonic anhydrase	4.2.1.1	CDS	carbonic anhydrase	4.2.1.1	cynT	
-	4031404	4033158	1755	PE-PGRS virulence associated protein	peg	gi|57116681|ref|NC_000962.2|_4033158_4031404		PE family.		CDS	PE family protein			
+	4030493	4031407	915	A/G-specific adenine glycosylase (EC 3.2.2.-)	peg	gi|57116681|ref|NC_000962.2|_4030493_4031407		A/G-specific DNA-adenine glycosylase (EC 3.2.2.-)	3.2.2.-	CDS	hhH-GPD superbase excision DNA repair family protein			
-	4033269	4034033	765	PUTATIVE HYDROLASE	peg	gi|57116681|ref|NC_000962.2|_4033979_4033269		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
+	4034057	4034374	318	Antibiotic biosynthesis monooxygenase	peg	gi|57116681|ref|NC_000962.2|_4034066_4034374		Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides		CDS	antibiotic biosynthesis monooxygenase family protein			
+	4034394	4035710	1317	Beta-lactamase (EC 3.5.2.6)	peg	gi|57116681|ref|NC_000962.2|_4034394_4035710		Beta-lactamase class A		CDS	beta-lactamase enzyme family protein			
+	4035857	4036684	828	Phage endolysin	peg	gi|57116681|ref|NC_000962.2|_4035857_4036684		N-acetylmuramoyl-L-alanine amidase.		CDS	N-acetylmuramoyl-L-alanine amidase family protein			
-	4036731	4038050	1320	PE_PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_4038050_4036731		PE family.		CDS	PE family protein			
-	4038158	4040704	2547	"ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative regulator of genetic competence clcC/mecB"	peg	gi|57116681|ref|NC_000962.2|_4040704_4038158		ATPases with chaperone activity, ATP-binding subunit		CDS	istB-like ATP binding family protein			
-	4040981	4041319	339	Histone protein Lsr2	peg	gi|57116681|ref|NC_000962.2|_4041319_4040981		Lsr2.		CDS	protein lsr2		lsr2	
-	4041423	4042940	1518	Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)	peg	gi|57116681|ref|NC_000962.2|_4042940_4041423		lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6	CDS	lysine--tRNA ligase	6.1.1.6	lysS	
-	4043041	4043859	819	"Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)"	peg	gi|57116681|ref|NC_000962.2|_4043859_4043041		pantothenate kinase (EC 2.7.1.33)	2.7.1.33	CDS	pantothenate kinase, type III family protein	2.7.1.33	coaX	
-	4043862	4044281	420	Aspartate 1-decarboxylase (EC 4.1.1.11)	peg	gi|57116681|ref|NC_000962.2|_4044281_4043862		L-aspartate 1-decarboxylase (EC 4.1.1.11)	4.1.1.11	CDS	aspartate 1-decarboxylase	4.1.1.11	panD	
-	4044281	4045210	930	Pantoate--beta-alanine ligase (EC 6.3.2.1)	peg	gi|57116681|ref|NC_000962.2|_4045210_4044281		pantothenate synthetase (EC 6.3.2.1)	6.3.2.1	CDS	pantoate--beta-alanine ligase	6.3.2.1	panC	
-	4045207	4046118	912	FIG173306: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4046118_4045207		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	4046303	4047496	1194	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_4047439_4046303		hypothetical protein		CDS	putative conserved transmembrane protein rich in alanine and arginine and proline			
-	4047705	4048181	477	FIG027937: secreted protein	peg	gi|57116681|ref|NC_000962.2|_4048181_4047705		Protein of unknown function (DUF3180).		CDS	conserved hypothetical protein			
-	4048181	4048747	567	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	peg	gi|57116681|ref|NC_000962.2|_4048747_4048181		2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2.7.6.3	CDS	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	2.7.6.3	folK	
-	4048744	4049145	402	Dihydroneopterin aldolase (EC 4.1.2.25)	peg	gi|57116681|ref|NC_000962.2|_4049145_4048744		dihydroneopterin aldolase	4.1.2.25	CDS	dihydroneopterin aldolase	4.1.2.25	folB	
-	4049138	4049965	828	Dihydropteroate synthase (EC 2.5.1.15)	peg	gi|57116681|ref|NC_000962.2|_4049965_4049138		Dihydropteroate synthase (EC 2.5.1.15)	2.5.1.15	CDS	dihydropteroate synthase	2.5.1.15	folP	
-	4049977	4050585	609	GTP cyclohydrolase I (EC 3.5.4.16) type 1	peg	gi|57116681|ref|NC_000962.2|_4050585_4049977		GTP cyclohydrolase I (EC 3.5.4.16)	3.5.4.16	CDS	GTP cyclohydrolase I	3.5.4.16	folE	
-	4050601	4052883	2283	Cell division protein FtsH (EC 3.4.24.-)	peg	gi|57116681|ref|NC_000962.2|_4052868_4050601		membrane protease FtsH catalytic subunit (EC 3.4.24.-)	3.4.24.-	CDS	ATP-dependent metallopeptidase HflB family protein	3.4.24.-	hflB	
+	4053036	4053638	603				hypothetical protein		CDS				
-	4054142	4054720	579	ESX-1 secretion system protein (Rv3614c)	peg	gi|57116681|ref|NC_000962.2|_4054720_4054142		hypothetical protein		CDS	ESX-1 secretion-associated protein EspD		espD	
-	4054812	4055123	312	Highly immunodominant RD1 (Region of Difference 1)-dependent secreted antigen specific for Mycobacterium tuberculosis infection	peg	gi|57116681|ref|NC_000962.2|_4055123_4054812		Protein of unknown function (DUF2580).		CDS	ESX-1 secretion-associated protein EspC		espC	
-	4055197	4056375	1179	ESX-1 secretion system protein (Rv3616c)	peg	gi|57116681|ref|NC_000962.2|_4056375_4055197		hypothetical protein		CDS	ESX-1 secretion-associated protein EspA		espA	
+	4057733	4058701	969	Epoxide hydrolase (EC 3.3.2.9)	peg	gi|57116681|ref|NC_000962.2|_4057733_4058701		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	alpha/beta hydrolase fold family protein			
+	4058698	4059885	1188	"Limonene 1,2-monooxygenase"	peg	gi|57116681|ref|NC_000962.2|_4058698_4059885		Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases	1.14.13.107	CDS	limonene 1,2-monooxygenase	1.14.13.107	limB	
-	4059984	4060268	285	ESAT-6-like protein EsxL	peg	gi|57116681|ref|NC_000962.2|_4060268_4059984		Proteins of 100 residues with WXG.		CDS	putative ESAT-6-like protein 6			
-	4060295	4060591	297	ESAT-6-like protein EsxK	peg	gi|57116681|ref|NC_000962.2|_4060591_4060295		WXG100 family type VII secretion target		CDS	putative ESAT-6-like protein 7			
-	4060648	4061889	1242	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_4061889_4060648		PPE-repeat proteins		CDS	PPE family protein			
-	4061899	4062198	300	PE family protein	peg	gi|57116681|ref|NC_000962.2|_4062198_4061899		PE family.		CDS	PE family protein			
+	4062413	4063249	837	Lipoprotein LpqG	peg	gi|57116681|ref|NC_000962.2|_4062449_4063249		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	4063254	4063862	609	Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	peg	gi|57116681|ref|NC_000962.2|_4063856_4063254		hypoxanthine phosphoribosyltransferase (EC 2.4.2.8)	2.4.2.8	CDS	hypoxanthine phosphoribosyltransferase	2.4.2.8	hpt	
-	4063901	4064872	972	tRNA(Ile)-lysidine synthetase	peg	gi|57116681|ref|NC_000962.2|_4064785_4063901		tRNA(Ile)-lysidine synthetase, N-terminal domain		CDS	tRNA(Ile)-lysidine synthetase	6.3.4.-	tilS	
-	4064851	4065924	1074	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4065912_4064851		putative hydrolase/uncharacterized protein, coenzyme F420 biosynthesis associated		CDS	hydrolase family protein			
-	4065900	4067285	1386	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg	gi|57116681|ref|NC_000962.2|_4067252_4065900		D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family	3.4.21.-, 3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	3.4.16.4	dacB	
+	4067423	4067911	489	Inorganic pyrophosphatase (EC 3.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_4067423_4067911		Inorganic pyrophosphatase	3.6.1.1	CDS	inorganic pyrophosphatase	3.6.1.1	ppa	
-	4067957	4069054	1098	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_4069054_4067957		Uncharacterized protein conserved in bacteria		CDS	integral membrane TerC family protein			
+	4069175	4070470	1296	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4069175_4070470		hypothetical protein		CDS	putative membrane protein			
+	4070514	4071239	726	Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster	peg	gi|57116681|ref|NC_000962.2|_4070526_4071239		Glycosyltransferases involved in cell wall biogenesis		CDS	glycosyl transferase 2 family protein			
+	4071236	4071580	345	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_4071236_4071580		Uncharacterized conserved protein (DUF2304).		CDS	conserved hypothetical protein			
+	4071791	4072666	876	Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin	peg	gi|57116681|ref|NC_000962.2|_4071791_4072666		Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin		CDS	phytanoyl-CoA dioxygenase family protein			
-	4072667	4073635	969	UDP-glucose 4-epimerase (EC 5.1.3.2)	peg	gi|57116681|ref|NC_000962.2|_4073611_4072667		Nucleoside-diphosphate-sugar epimerases	5.1.3.2	CDS	UDP-glucose 4-epimerase			
+	4073649	4075409	1761	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4073649_4075409		hypothetical protein		CDS	putative membrane protein			
+	4075752	4076099	348	putative transposase	peg	gi|57116681|ref|NC_000962.2|_4075752_4076099		Transposase and inactivated derivatives		CDS	sigma-70, region 4 family protein			
+	4076089	4076625	537	PROBABLE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1533	peg	gi|57116681|ref|NC_000962.2|_4076089_4076625					iS21 family transposase			
+	4076619	4076984	366	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_4076619_4076984		hypothetical protein		CDS	iS21 family transposase			
+	4076984	4077730	747	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_4076984_4077730		DNA replication protein		CDS	istB-like ATP binding family protein			
-	4078520	4079788	1269	Transposase	peg	gi|57116681|ref|NC_000962.2|_4079788_4078520		Transposase and inactivated derivatives		CDS	transposase, Mutator family protein			
-	4079925	4080560	636	Cell filamentation protein Fic	peg	gi|57116681|ref|NC_000962.2|_4080560_4079925		Protein involved in cell division		CDS	fic/DOC family protein			
-	4080571	4080765	195	FIG00821290: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4080765_4080571		hypothetical protein		CDS	conserved hypothetical protein			
+	4081160	4081351	192	FIG00821200: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4081160_4081351		hypothetical protein		CDS	conserved hypothetical protein			
-	4081516	4082724	1209	DNA polymerase III delta prime subunit (EC 2.7.7.7)	peg	gi|57116681|ref|NC_000962.2|_4082712_4081516		DNA polymerase III, delta prime subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III, delta' subunit	2.7.7.7	holB	
-	4084453	4087440	2988	DNA topoisomerase I (EC 5.99.1.2)	peg	gi|57116681|ref|NC_000962.2|_4087257_4084453		DNA topoisomerase I (EC 5.99.1.2)	5.99.1.2	CDS	DNA topoisomerase I	5.99.1.2	topA	
+	4082807	4084456	1650	Adenylate cyclase (EC 4.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_4082807_4084456		Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	HAMP domain protein			
-	4087610	4088188	579	FIG00995018: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4088188_4087610		hypothetical protein		CDS	conserved hypothetical protein			
-	4088328	4088531	204	Cold shock protein CspA	peg	gi|57116681|ref|NC_000962.2|_4088531_4088328		cold-shock DNA-binding protein family		CDS	putative cold shock protein A			
+	4088781	4091096	2316	ATP-dependent helicase	peg	gi|57116681|ref|NC_000962.2|_4088781_4091096		helicase/secretion neighborhood putative DEAH-box helicase		CDS	DEAD/DEAH box helicase family protein			
+	4091233	4091517	285	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4091233_4091517		PE family.		CDS	PE family protein			
+	4091841	4092878	1038	FIG00821239: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4091841_4092878		hypothetical protein		CDS	conserved hypothetical protein			
-	4093021	4093176	156	FIG00824171: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4093176_4093021					conserved hypothetical protein			
+	4093625	4094527	903	PE-PGRS family protein	peg	gi|57116681|ref|NC_000962.2|_4093625_4094527		PE family.		CDS	PE family protein			
-	4094660	4094968	309	FIG00995606: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4094959_4094660		helicase/secretion neighborhood TadE-like protein		CDS	flp pilus-assembly TadE/G-like family protein			
-	4094923	4095300	378	FIG00999563: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4095300_4094923		hypothetical protein		CDS	conserved hypothetical protein			
-	4095324	4095530	207	FIG043778: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4095530_4095324		Protein of unknown function (DUF4244).		CDS	conserved hypothetical protein			
-	4095540	4096142	603	FIG054221: Possible conserved alanine rich membrane protein	peg	gi|57116681|ref|NC_000962.2|_4096142_4095540		Flp pilus assembly protein TadC		CDS	type II secretion system (T2SS), F family protein			
-	4096139	4096939	801	FIG016317: Probable conserved transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_4096939_4096139		Flp pilus assembly protein TadB		CDS	type II secretion system (T2SS), F family protein			
-	4096936	4098099	1164	"Flp pilus assembly protein, ATPase CpaF"	peg	gi|57116681|ref|NC_000962.2|_4098099_4096936		helicase/secretion neighborhood ATPase		CDS	type II/IV secretion system family protein			
-	4098096	4099169	1074	Septum site-determining protein MinD @ possible CpaE	peg	gi|57116681|ref|NC_000962.2|_4099169_4098096		helicase/secretion neighborhood CpaE-like protein		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
+	4099647	4100510	864	Phosphoserine phosphatase (EC 3.1.3.3)	peg	gi|57116681|ref|NC_000962.2|_4099647_4100510		HAD-superfamily subfamily IB hydrolase, TIGR01490		CDS	HAD phosphoserine phosphatase-like hydrolase, IB family protein			
-	4101265	4102035	771	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4102035_4101265		hypothetical protein		CDS	putative heat repeat-containing PBS lyase			
-	4102032	4103687	1656	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	peg	gi|57116681|ref|NC_000962.2|_4103687_4102032		ATPase components of various ABC-type transport systems, contain duplicated ATPase		CDS	nickel import ATP-binding protein NikE	3.6.3.24	nikE	
-	4103675	4104538	864	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	peg	gi|57116681|ref|NC_000962.2|_4104538_4103675		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	N-terminal TM domain of oligopeptide transport permease C family protein			
-	4104531	4105457	927	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	peg	gi|57116681|ref|NC_000962.2|_4105457_4104531		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	binding--dependent transport system inner membrane component family protein			
-	4105459	4107084	1626	"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)"	peg	gi|57116681|ref|NC_000962.2|_4107084_4105459		ABC-type oligopeptide transport system, periplasmic component		CDS	bacterial extracellular solute-binding s, 5 Middle family protein			
+	4107792	4109747	1956	Acetyl-coenzyme A synthetase (EC 6.2.1.1)	peg	gi|57116681|ref|NC_000962.2|_4107792_4109747		acetyl-coenzyme A synthetase (EC 6.2.1.1)	6.2.1.1	CDS	acetate--CoA ligase	6.2.1.1	acs	
-	4109783	4110481	699	Protease	peg	gi|57116681|ref|NC_000962.2|_4110424_4109783		hypothetical protein		CDS	putative secreted protein			
+	4110827	4111345	519	FIG00820727: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4110827_4111345		Protein of unknown function (DUF1469).		CDS	conserved hypothetical protein			
-	4112322	4113524	1203	putative serine protease	peg	gi|57116681|ref|NC_000962.2|_4113515_4112322		Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain		CDS	colicin V production family protein			
+	4111346	4112329	984	Epoxide hydrolase (EC 3.3.2.9)	peg	gi|57116681|ref|NC_000962.2|_4111346_4112329		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.3.2.9	CDS	alpha/beta hydrolase fold family protein			
-	4113521	4114342	822	Hypothetical nudix hydrolase YeaB	peg	gi|57116681|ref|NC_000962.2|_4114342_4113521		ADP-ribose pyrophosphatase		CDS	NUDIX domain protein			
-	4114474	4115121	648	Possible membrane-anchored thioredoxin-like protein	peg	gi|57116681|ref|NC_000962.2|_4115121_4114474		Thiol-disulfide isomerase and thioredoxins		CDS	ahpC/TSA family protein			
-	4115157	4115945	789	Endonuclease III (EC 4.2.99.18)	peg	gi|57116681|ref|NC_000962.2|_4115945_4115157		DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-)	4.2.99.18	CDS	endonuclease III	4.2.99.18	nth	
+	4116032	4116379	348	POSSIBLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4116032_4116379					putative membrane protein			
+	4116159	4116413	255				hypothetical protein		CDS				
+	4116478	4117152	675	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	peg	gi|57116681|ref|NC_000962.2|_4116478_4117152		cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	putative transcriptional regulator			
-	4117258	4118052	795	"FIG146518: Zn-dependent hydrolases, including glyoxylases"	peg	gi|57116681|ref|NC_000962.2|_4118052_4117258		Zn-dependent hydrolases, including glyoxylases		CDS	metallo-beta-lactamase superfamily protein			
-	4118059	4118514	456	FIG137598: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4118514_4118059		Putative translation initiation inhibitor, yjgF family		CDS	endoribonuclease L-PSP family protein			
-	4118530	4118691	162	FIG011121: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4118691_4118530		Domain of unknown function (DUF4177).		CDS	conserved hypothetical protein			
+	4118776	4119798	1023	Arsenical pump-driving ATPase (EC 3.6.3.16)	peg	gi|57116681|ref|NC_000962.2|_4118827_4119798		arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1)		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
+	4119795	4120955	1161	Arsenical pump-driving ATPase (EC 3.6.3.16)	peg	gi|57116681|ref|NC_000962.2|_4119822_4120955		arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1)		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
-	4121198	4121500	303	WhiB-type transcription regulator	peg	gi|57116681|ref|NC_000962.2|_4121500_4121198		Transcription factor WhiB.		CDS	transcription factor WhiB family protein			
+	4121916	4124348	2433	Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	peg	gi|57116681|ref|NC_000962.2|_4121916_4124348		Membrane carboxypeptidase (penicillin-binding protein)		CDS	penicillin binding transpeptidase domain protein			
+	4124417	4125376	960	putative secreted protein	peg	gi|57116681|ref|NC_000962.2|_4124417_4125376		Predicted phosphohydrolases		CDS	calcineurin-like phosphoesterase family protein			
+	4125373	4126479	1107	Cysteine synthase (EC 2.5.1.47)	peg	gi|57116681|ref|NC_000962.2|_4125373_4126479		Cysteine synthase	2.5.1.47	CDS	pyridoxal-phosphate dependent enzyme family protein			
-	4127295	4128725	1431	Probable cytochrome P450 137 cyp137 (EC 1.14.-.-)	peg	gi|57116681|ref|NC_000962.2|_4128596_4127295		Cytochrome P450		CDS	cytochrome P450 family protein			
-	4128751	4129200	450	FIG00821580: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4129200_4128751		hypothetical protein		CDS	conserved hypothetical protein			
-	4129323	4129691	369	Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV	peg	gi|57116681|ref|NC_000962.2|_4129691_4129323		anti-anti-sigma factor		CDS	anti-anti-sigma factor family protein			
-	4129893	4130312	420	Transamidase GatB domain protein	peg	gi|57116681|ref|NC_000962.2|_4130312_4129893		Uncharacterized conserved protein		CDS	yqey-like family protein			
+	4130480	4131712	1233	putative integral membrane protein	peg	gi|57116681|ref|NC_000962.2|_4130516_4131712		hypothetical protein		CDS	putative membrane protein			
+	4131691	4132392	702	PROBABLE CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4131739_4132392		Domain of unknown function (DUF4129).		CDS	conserved hypothetical protein			
+	4132440	4133519	1080	FIG00818282: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4132440_4133519		Domain of unknown function (DUF4350).		CDS	conserved hypothetical protein			
+	4133516	4134592	1077	MoxR-like ATPase	peg	gi|57116681|ref|NC_000962.2|_4133669_4134592		MoxR-like ATPases	3.6.3.-	CDS	AAA domain family protein			
+	4134726	4136048	1323	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_4134726_4136048		Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)		CDS	conserved hypothetical protein			
-	4136122	4137114	993	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4137114_4136122		Uncharacterized membrane protein		CDS	conserved hypothetical protein			
+	4137206	4138138	933	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_4137215_4138138		Predicted membrane protein/domain		CDS	RDD family protein			
-	4138202	4139755	1554	Glycerol kinase (EC 2.7.1.30)	peg	gi|57116681|ref|NC_000962.2|_4139755_4138202		glycerol kinase (EC 2.7.1.30)	2.7.1.30	CDS	glycerol kinase	2.7.1.30	glpK	
-	4139805	4140242	438	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_4140242_4139805		Predicted nucleic acid-binding protein, contains PIN domain		CDS	mycobacterium tuberculosis PIN domain protein			
-	4140239	4140463	225	"DNA-binding protein, CopG family"	peg	gi|57116681|ref|NC_000962.2|_4140463_4140239		hypothetical protein		CDS				
+	4140484	4142022	1539	FIG00820887: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4140484_4142022		hypothetical protein		CDS	glutamate-cysteine ligase 2 family protein			
+	4142044	4142745	702	Methyltransferase (EC 2.1.1.-)	peg	gi|57116681|ref|NC_000962.2|_4142044_4142745		Thiopurine S-methyltransferase (TPMT).		CDS	methyltransferase domain protein			
-	4142748	4143935	1188	"Selenocysteine lyase, CsdB"	peg	gi|57116681|ref|NC_000962.2|_4143920_4142748		Selenocysteine lyase		CDS	aminotransferase class-V family protein			
-	4143951	4144916	966	ABC transporter ATP-binding protein	peg	gi|57116681|ref|NC_000962.2|_4144910_4143951		probable methyltransferase		CDS	conserved hypothetical protein			
-	4144913	4145614	702	Glutamine amidotransferases class-II	peg	gi|57116681|ref|NC_000962.2|_4145563_4144913		TIGR03442 family protein		CDS	glutamine amidotransferase domain protein			
-	4145614	4146891	1278	Serine/threonine kinase	peg	gi|57116681|ref|NC_000962.2|_4146891_4145614		TIGR03440 family protein		CDS	aerobic sulfatase maturase family protein			
-	4146888	4148186	1299	"Similar to Glutamate--cysteine ligase (EC 6.3.2.2), function unknown"	peg	gi|57116681|ref|NC_000962.2|_4148171_4146888		glutamate--cysteine ligase family protein	6.3.2.2	CDS	glutamate-cysteine ligase 2 family protein			
-	4148318	4148962	645	FIG00820305: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4148962_4148318		PknH-like extracellular domain.		CDS	pknH-like extracellular domain protein			
-	4149091	4149480	390	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4149480_4149091					putative conserved proline rich protein			
-	4149591	4149911	321	FIG00820599: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4149911_4149591		hypothetical protein		CDS	hypothetical protein			
-	4150030	4151178	1149	FIG00821722: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4151136_4150030		Domain of unknown function (DUF4185).		CDS	conserved hypothetical protein			
-	4151180	4152217	1038	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	peg	gi|57116681|ref|NC_000962.2|_4152196_4151180		aspartate semialdehyde dehydrogenase (EC 1.2.1.11)	1.2.1.11	CDS	aspartate-semialdehyde dehydrogenase	1.2.1.11	asd	
-	4152218	4153483	1266	Aspartokinase (EC 2.7.2.4)	peg	gi|57116681|ref|NC_000962.2|_4153483_4152218		aspartate kinase (EC 2.7.2.4)	2.7.2.4	CDS	aspartokinase	2.7.2.4	lysC	
+	4153740	4155674	1935	2-isopropylmalate synthase (EC 2.3.3.13)	peg	gi|57116681|ref|NC_000962.2|_4153740_4155674		2-isopropylmalate synthase, yeast type	2.3.3.13	CDS	2-isopropylmalate synthase	2.3.3.13	leuA	
-	4155740	4156729	990	DNA polymerase III subunit epsilon( EC:2.7.7.7 )	peg	gi|57116681|ref|NC_000962.2|_4156729_4155740		DNA polymerase III, epsilon subunit (EC 2.7.7.7)	2.7.7.7	CDS	exonuclease family protein			
+	4156981	4158222	1242	proposed amino acid ligase found clustered with an amidotransferase	peg	gi|57116681|ref|NC_000962.2|_4156981_4158222		UDP-N-acetylmuramyl tripeptide synthase		CDS	mur ligase middle domain protein			
+	4158215	4158922	708	Putative amidotransferase similar to cobyric acid synthase	peg	gi|57116681|ref|NC_000962.2|_4158227_4158922		Predicted glutamine amidotransferase		CDS	cobB/CobQ-like glutamine amidotransferase domain protein			
-	4158931	4159806	876	FIG00821247: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4159806_4158931		Domain of unknown function (DUF4095).		CDS	conserved hypothetical protein			
-	4159889	4160500	612	Recombination protein RecR	peg	gi|57116681|ref|NC_000962.2|_4160500_4159889		DNA replication and repair protein RecR		CDS	recombination protein RecR		recR	
-	4160512	4160895	384	FIG000557: hypothetical protein co-occurring with RecR	peg	gi|57116681|ref|NC_000962.2|_4160895_4160512		DNA-binding protein, YbaB/EbfC family		CDS	DNA-binding protein, YbaB/EbfC family			
+	4161012	4161773	762	probable secreted protein	peg	gi|57116681|ref|NC_000962.2|_4161048_4161773		N-acetylmuramoyl-L-alanine amidase	3.5.1.28	CDS	N-acetylmuramoyl-L-alanine amidase family protein			
-	4161815	4162258	444	FIG00994252: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4162258_4161815		Polyketide cyclase / dehydrase and lipid transport.		CDS	polyketide cyclase / dehydrase and lipid transport family protein			
+	4162306	4163718	1413	FAD/FMN-containing dehydrogenases	peg	gi|57116681|ref|NC_000962.2|_4162342_4163718		FAD/FMN-containing dehydrogenases		CDS	FAD binding domain protein			
-	4164995	4166731	1737	DNA polymerase III subunits gamma and tau (EC 2.7.7.7)	peg	gi|57116681|ref|NC_000962.2|_4166731_4164995		DNA polymerase III, subunit gamma and tau	2.7.7.7	CDS	DNA polymerase III, subunit gamma and tau	2.7.7.7	dnaX	
+	4163715	4164998	1284	Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	peg	gi|57116681|ref|NC_000962.2|_4163736_4164998		Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	mycolic acid cyclopropane synthetase family protein			
-	4166821	4168128	1308	Aspartate transaminase (EC 2.6.1.1)	peg	gi|57116681|ref|NC_000962.2|_4168128_4166821		Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs		CDS	ASPARTATE AMINOTRANSFERASE	2.6.1.1	aspB	
+	4168536	4169300	765	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4168536_4169300		hypothetical protein		CDS	conserved hypothetical protein			
+	4169467	4169709	243	"serine esterase, cutinase family"	peg	gi|57116681|ref|NC_000962.2|_4169467_4169709					cutinase family protein			
-	4170049	4170927	879				hypothetical protein		CDS				
+	4169606	4170169	564	"serine esterase, cutinase family"	peg	gi|57116681|ref|NC_000962.2|_4169858_4170169		Cutinase.		CDS	cutinase family protein			
+	4170214	4171143	930	Dihydroflavonol-4-reductase (EC 1.1.1.219)	peg	gi|57116681|ref|NC_000962.2|_4170214_4171143					polysaccharide biosynthesis family protein			
+	4170981	4171214	234				hypothetical protein		CDS				
+	4171421	4172614	1194	"2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific (EC 1.1.1.4)"	peg	gi|57116681|ref|NC_000962.2|_4171421_4172614		Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	zinc-binding dehydrogenase family protein			
+	4172955	4174763	1809	POSSIBLE OXIDOREDUCTASE	peg	gi|57116681|ref|NC_000962.2|_4172955_4174763		Uncharacterized conserved protein		CDS	FAD binding domain protein			
+	4174873	4178070	3198	Multidrug resistance protein B	peg	gi|57116681|ref|NC_000962.2|_4174996_4178070		drug resistance transporter, EmrB/QacA subfamily		CDS	H+ antiporter-2 family protein			
+	4178096	4180615	2520	Possible Fe-S oxidoreductase	peg	gi|57116681|ref|NC_000962.2|_4178096_4180615		Predicted Fe-S oxidoreductases		CDS	methyltransferase domain protein			
-	4180680	4181720	1041	ATP-dependent DNA ligase (EC 6.5.1.1)	peg	gi|57116681|ref|NC_000962.2|_4181720_4180680		DNA polymerase LigD, polymerase domain	6.5.1.1	CDS	DNA polymerase LigD, polymerase domain		ligD	
+	4181758	4182834	1077	ATP-dependent DNA ligase (EC 6.5.1.1) LigC	peg	gi|57116681|ref|NC_000962.2|_4181758_4182834		ATP-dependent DNA ligase	6.5.1.1	CDS	ATP dependent DNA ligase domain protein			
-	4182852	4183004	153	FIG00821224: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4183004_4182852					hypothetical protein			
+	4182856	4183992	1137	FIG00820818: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4182856_4183992		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	4184012	4184512	501	MutT-like protein	peg	gi|57116681|ref|NC_000962.2|_4184512_4184012		Predicted NTP pyrophosphohydrolase		CDS	NUDIX domain protein			
-	4184526	4185890	1365	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_4185890_4184526		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	putative diacyglycerol O-acyltransferase tgs2			
+	4186089	4186577	489	Probable transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_4186089_4186577		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	4186634	4187695	1062	"Transcriptional regulator, AraC family"	peg	gi|57116681|ref|NC_000962.2|_4186640_4187695		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
-	4189285	4190232	948	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_4190232_4189285		PPE family.		CDS	PPE family protein			
+	4187699	4189288	1590	"membrane protein, putative"	peg	gi|57116681|ref|NC_000962.2|_4187699_4189288		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	4190284	4190517	234	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4190517_4190284		PPE family.		CDS	PPE family protein			
-	4190833	4192188	1356	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase	peg	gi|57116681|ref|NC_000962.2|_4192188_4190833		Diacylglycerol O-acyltransferase (EC 2.3.1.20)		CDS	putative diacyglycerol O-acyltransferase tgs2			
-	4192179	4192853	675	"monooxygenase, flavin-binding family"	peg	gi|57116681|ref|NC_000962.2|_4192853_4192179		hypothetical protein		CDS	FAD-containing monooxygenase EthA	1.14.13.-	ethA	
-	4192850	4193245	396	"monooxygenase, flavin-binding family"	peg	gi|57116681|ref|NC_000962.2|_4193245_4192850		hypothetical protein		CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
-	4193391	4195373	1983	"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)"	peg	gi|57116681|ref|NC_000962.2|_4195373_4193391		ATPase, P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase		CDS	cadmium-translocating P-type ATPase	3.6.3.3	cadA	
+	4195440	4195802	363	"Cobalt(II) binding transcription repressor, nmtR"	peg	gi|57116681|ref|NC_000962.2|_4195440_4195802		transcriptional regulator, ArsR family		CDS	HTH-type transcriptional repressor CzrA		czrA	
-	4195886	4196098	213	FIG00822941: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4196083_4195886		Uncharacterized protein conserved in bacteria (DUF2237).		CDS	conserved hypothetical protein			
-	4196171	4196506	336	PE family protein	peg	gi|57116681|ref|NC_000962.2|_4196506_4196171		PE family.		CDS	conserved hypothetical protein			
+	4196724	4197107	384	FIG00820925: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4196724_4197107		hypothetical protein		CDS	conserved hypothetical protein			
+	4197236	4197595	360	FIG00821869: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4197236_4197595		hypothetical protein		CDS	conserved hypothetical protein			
-	4197628	4197951	324	FIG00820497: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4197951_4197628		hypothetical protein		CDS	conserved hypothetical protein			
-	4197884	4198192	309				PIN domain.		CDS				
-	4198205	4198597	393	Excisionase	peg	gi|57116681|ref|NC_000962.2|_4198531_4198205		DNA binding domain, excisionase family		CDS	DNA binding , excisionase family domain protein			
+	4198874	4199089	216	Integrase	peg	gi|57116681|ref|NC_000962.2|_4198874_4199089		Site-specific recombinase XerD		CDS	phage integrase family protein			
-	4199247	4199705	459	tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	peg	gi|57116681|ref|NC_000962.2|_4199705_4199247		tRNA-adenosine deaminase (EC 3.5.4.-)		CDS	cytidine and deoxycytidylate deaminase zinc-binding region family protein			
-	4199721	4200242	522	FIG00994171: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4200242_4199721		putative tRNA adenosine deaminase-associated protein		CDS	putative conserved protein			
-	4201289	4201810	522	FIG00998044: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4201810_4201289		Uncharacterized protein conserved in bacteria		CDS	glycolipid-binding family protein			
+	4200382	4201326	945	Arogenate dehydrogenase (EC 1.3.1.43)	peg	gi|57116681|ref|NC_000962.2|_4200388_4201326		prephenate dehydrogenase (EC 1.3.1.12)	1.3.1.12	CDS	prephenate dehydrogenase			
-	4201894	4202613	720	Glycine betaine ABC transport system permease protein	peg	gi|57116681|ref|NC_000962.2|_4202613_4201894		ABC-type proline/glycine betaine transport systems, permease component		CDS	binding--dependent transport system inner membrane component family protein			
-	4202610	4203299	690	L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)	peg	gi|57116681|ref|NC_000962.2|_4203299_4202610		ABC-type proline/glycine betaine transport systems, permease component		CDS	binding--dependent transport system inner membrane component family protein			
-	4203287	4204417	1131	L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)	peg	gi|57116681|ref|NC_000962.2|_4204417_4203287		ABC-type proline/glycine betaine transport systems, ATPase components		CDS	ABC transporter family protein			
-	4204426	4205457	1032	L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1)	peg	gi|57116681|ref|NC_000962.2|_4205256_4204426		Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)		CDS	substrate binding domain of ABC-type glycine betaine transport system family protein			
+	4205487	4205840	354	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_4205538_4205840		Uncharacterized integral membrane protein		CDS	conserved hypothetical protein			
-	4205862	4206917	1056	Acyl-CoA dehydrogenase FadE36 (EC 1.3.99.-)	peg	gi|57116681|ref|NC_000962.2|_4206917_4205862		Predicted aminoglycoside phosphotransferase		CDS	phosphotransferase enzyme family protein			
-	4206996	4208876	1881	alkyl sulfatase (EC 3.1.6.-)	peg	gi|57116681|ref|NC_000962.2|_4208876_4206996		Alkyl sulfatase and related hydrolases		CDS	metallo-beta-lactamase superfamily protein			
+	4209047	4209526	480	19 kDa lipoprotein antigen precursor LpqH	peg	gi|57116681|ref|NC_000962.2|_4209047_4209526		Mycobacterium 19 kDa lipoprotein antigen.		CDS	mycobacterium 19 kDa lipoantigen family protein			
-	4209582	4211018	1437	sensor histidine kinase	peg	gi|57116681|ref|NC_000962.2|_4211009_4209582		Signal transduction histidine kinase	2.7.13.3	CDS	putative sensor histidine kinase TcrY			
-	4211080	4211820	741	putative two-component system response regulator	peg	gi|57116681|ref|NC_000962.2|_4211820_4211080		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	putative transcriptional regulatory protein TcrX			
+	4212158	4212982	825	FIG00821932: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4212158_4212982		hypothetical protein		CDS	conserved hypothetical protein			
-	4212996	4213940	945	O-Methyltransferase involved in polyketide biosynthesis	peg	gi|57116681|ref|NC_000962.2|_4213940_4212996		methyltransferase, putative, TIGR00027 family		CDS	putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			
+	4214070	4214429	360	FIG00824660: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4214070_4214429		SnoaL-like domain.		CDS	snoaL-like domain protein			
+	4214615	4214887	273	FIG00821447: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4214615_4214887		hypothetical protein		CDS	conserved hypothetical protein			
-	4215200	4215775	576	FIG00820132: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4215745_4215200		hypothetical protein		CDS	putative membrane protein			
-	4215881	4216063	183	PROBABLE REMNANT OF A TRANSPOSASE	peg	gi|57116681|ref|NC_000962.2|_4216003_4215881		hypothetical protein		CDS	hypothetical protein			
-	4216078	4216269	192	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_4216269_4216078		hypothetical protein		CDS	transposase domain protein			
-	4216404	4216730	327	FIG00824690: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4216730_4216404		hypothetical protein		CDS	conserved hypothetical protein			
+	4217134	4218195	1062	Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	peg	gi|57116681|ref|NC_000962.2|_4217134_4218195		Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	2.6.1.9	CDS	putative phenylalanine aminotransferase			
-	4218241	4218825	585	"Transcriptional regulator, ArsR family"	peg	gi|57116681|ref|NC_000962.2|_4218825_4218241		TIGR03086 family protein		CDS	conserved hypothetical protein			
+	4218789	4219673	885	Enoyl-CoA hydratase	peg	gi|57116681|ref|NC_000962.2|_4218849_4219673		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	enoyl-CoA hydratase/isomerase family protein			
+	4219685	4220932	1248	Beta-lactamase	peg	gi|57116681|ref|NC_000962.2|_4219685_4220932		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
+	4221088	4222648	1561							conserved hypothetical protein			
+	4222694	4223680	987	Quinone oxidoreductase (EC 1.6.5.5)	peg	gi|57116681|ref|NC_000962.2|_4222694_4223680		putative NAD(P)H quinone oxidoreductase, PIG3 family		CDS	NAD(P)H quinone oxidoreductase, PIG3 family protein			
-	4223699	4224895	1197	Cysteine desulfurase (EC 2.8.1.7)	peg	gi|57116681|ref|NC_000962.2|_4224895_4223699		Selenocysteine lyase		CDS	aminotransferase class-V family protein			
+	4224985	4226985	2001	FIG00820726: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4224985_4226985		hypothetical protein		CDS	putative membrane protein			
+	4227001	4227525	525	FIG00822472: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4227001_4227525		Protein of unknown function (DUF2587).		CDS	conserved hypothetical protein			
+	4227529	4228350	822	"O-antigen export system, ATP-binding protein"	peg	gi|57116681|ref|NC_000962.2|_4227529_4228350		ABC-type polysaccharide/polyol phosphate transport system, ATPase component		CDS	ABC transporter family protein			
+	4228347	4229261	915	Putative glycosyl transferase	peg	gi|57116681|ref|NC_000962.2|_4228347_4229261		Predicted glycosyltransferases		CDS	UDP-galactofuranosyl transferase GlfT1	2.4.1.-	glfT1	
+	4229258	4230100	843	O-antigen export system permease protein RfbD	peg	gi|57116681|ref|NC_000962.2|_4229258_4230100		ABC-type polysaccharide/polyol phosphate export systems, permease component		CDS	ABC-2 type transporter family protein			
+	4230256	4231236	981	"dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)"	peg	gi|57116681|ref|NC_000962.2|_4230256_4231236		dTDP-D-glucose 4,6-dehydratase	4.2.1.46	CDS	polysaccharide biosynthesis family protein			
-	4232374	4233597	1224	Membrane proteins related to metalloendopeptidases	peg	gi|57116681|ref|NC_000962.2|_4233597_4232374		Membrane proteins related to metalloendopeptidases		CDS	glycosyl transferase 2 family protein			
+	4231320	4232393	1074	"dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)"	peg	gi|57116681|ref|NC_000962.2|_4231353_4232393		hypothetical protein		CDS	conserved hypothetical protein			
-	4233610	4234536	927	FIG00819993: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4234536_4233610		methyltransferase, putative, TIGR00027 family		CDS	methyltransferase, TIGR00027 family protein	2.1.1.-		
+	4234780	4235265	486	Nucleoside diphosphate kinase regulator	peg	gi|57116681|ref|NC_000962.2|_4234780_4235265		Transcription elongation factor		CDS	transcription elongation factor, GreA/GreB, C-term family protein			
+	4235311	4235739	429	Possible membrane protein	peg	gi|57116681|ref|NC_000962.2|_4235311_4235739		Predicted membrane protein		CDS	gtrA-like family protein			
+	4235779	4237164	1386	"Oxidoreductase, FAD-binding protein"	peg	gi|57116681|ref|NC_000962.2|_4235788_4237164		FAD/FMN-containing dehydrogenases		CDS	putative decaprenylphosphoryl-beta-D-ribose oxidase			
+	4237165	4237929	765	3-oxoacyl-[acyl-carrier protein] reductase paralog (EC 1.1.1.100)	peg	gi|57116681|ref|NC_000962.2|_4237198_4237929		Short-chain dehydrogenases of various substrate specificities		CDS	putative decaprenylphosphoryl-D-2-keto erythropentose reductase			
+	4237971	4239863	1893	putative membrane protein	peg	gi|57116681|ref|NC_000962.2|_4238004_4239863		Arabinofuranosyltransferase N terminal./Arabinofuranosyltransferase A C terminal.	2.4.2.-	CDS	arabinofuranosyltransferase AftA	2.4.2.-	aftA	
+	4239860	4243147	3288	INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBC (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE)	peg	gi|57116681|ref|NC_000962.2|_4239860_4243147		Mycobacterial cell wall arabinan synthesis protein.	2.4.2.-	CDS	putative arabinosyltransferase C			
+	4243233	4246517	3285	Probable arabinosyltransferase A (EC 2.4.2.-)	peg	gi|57116681|ref|NC_000962.2|_4243233_4246517		4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	2.4.2.-	CDS	mycobacterial cell wall arabinan synthesis family protein			
+	4246514	4249810	3297	Integral membrane indolylacetylinositol arabinosyltransferase embB( EC:2.4.2.34 )	peg	gi|57116681|ref|NC_000962.2|_4246598_4249810		Mycobacterial cell wall arabinan synthesis protein.	2.4.2.-	CDS	putative arabinosyltransferase C			
+	4249878	4251005	1128	Putative uncharacterized protein BCG_3858	peg	gi|57116681|ref|NC_000962.2|_4250124_4251005		RNAse Z (EC 3.1.26.11)		CDS	metallo-beta-lactamase superfamily protein			
+	4251085	4252866	1782	Probable acyl-CoA dehydrogenase fadE35 (EC 1.3.99.-)	peg	gi|57116681|ref|NC_000962.2|_4251085_4252866		Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	4252993	4254327	1335	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_4252993_4254327		Transposase and inactivated derivatives		CDS	transposase family protein			
-	4254380	4255948	1569	Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	peg	gi|57116681|ref|NC_000962.2|_4255948_4254380		Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)		CDS	propionyl-CoA carboxylase complex B subunit		pccB	
-	4255945	4261146	5202	"Probable polyketide synthase, similar to many. e.g. gp|M63676|SERERYAA_1 S.erythraea first ORF of eryA gene, involved in complex polyketide formation in erythromycin biosynthesis."	peg	gi|57116681|ref|NC_000962.2|_4261080_4255945		mycolic acid condensase (EC 2.3.1.-)		CDS	thioesterase domain protein			
-	4261153	4263042	1890	fatty-acid-CoA ligase FadD32	peg	gi|57116681|ref|NC_000962.2|_4263042_4261153		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	long-chain-fatty-acid--AMP ligase FadD32	6.2.1.-	fadD32	
-	4263355	4264365	1011	hypothetical protein Rv3802c	peg	gi|57116681|ref|NC_000962.2|_4264365_4263355		Cutinase.		CDS	conserved hypothetical protein			
-	4264563	4265462	900	Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C) (EC 2.3.1.-)	peg	gi|57116681|ref|NC_000962.2|_4265462_4264563		Predicted esterase		CDS	antigen 85-C	2.3.1.-	fbpC	
-	4265642	4266658	1017	Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C) (EC 2.3.1.-)	peg	gi|57116681|ref|NC_000962.2|_4266604_4265642		Predicted esterase		CDS	antigen 85-B	2.3.1.-	fbpB	
-	4266953	4268950	1998	hypothetical protein Rv3805c	peg	gi|57116681|ref|NC_000962.2|_4268854_4266953		hypothetical protein	2.4.2.-	CDS	putative membrane protein			
-	4268925	4269833	909	POSSIBLE CONSERVED INTEGRAL MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4269833_4268925		4-hydroxybenzoate polyprenyltransferase and related prenyltransferases		CDS	ubiA prenyltransferase family protein			
-	4269840	4270373	534	FIG008913: Membrane-associated phospholipid phosphatase	peg	gi|57116681|ref|NC_000962.2|_4270340_4269840		Membrane-associated phospholipid phosphatase		CDS	PAP2 superfamily protein			
-	4270366	4272279	1914	Galactofuranosyl transferase (EC 2.-.-.-)	peg	gi|57116681|ref|NC_000962.2|_4272213_4270366		Predicted glycosyltransferases		CDS	UDP-galactofuranosyl transferase GlfT2	2.4.1.-	glfT2	
-	4272276	4273475	1200	UDP-galactopyranose mutase (EC 5.4.99.9)	peg	gi|57116681|ref|NC_000962.2|_4273475_4272276		UDP-galactopyranose mutase	5.4.99.9	CDS	UDP-galactopyranose mutase	5.4.99.9	glf	
+	4273739	4274593	855	Exported repetitive protein precursor (Cell surface protein pirG) (EXP53)	peg	gi|57116681|ref|NC_000962.2|_4273739_4274593		GLTT repeat (6 copies).		CDS	exported repetitive protein		erp	
+	4274756	4276417	1662	Putative uncharacterized protein BCG_3873	peg	gi|57116681|ref|NC_000962.2|_4274756_4276417		Uncharacterized protein potentially involved in peptidoglycan biosynthesis		CDS	N-acetylmuramoyl-L-alanine amidase family protein			
-	4278082	4278234	153	FIG00823856: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4278234_4278082		hypothetical protein		CDS	putative pilT domain protein			
+	4276571	4278085	1515	PE-PGRS FAMILY PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4276571_4278085		PE family.		CDS	PE family protein			
-	4278394	4279203	810	Cof family hydrolase	peg	gi|57116681|ref|NC_000962.2|_4279203_4278394		HAD-superfamily hydrolase, subfamily IIB		CDS	HAD hydrolase, IIB family protein			
-	4279230	4280015	786	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	peg	gi|57116681|ref|NC_000962.2|_4280015_4279230		1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	acyltransferase family protein			
-	4280033	4280788	756	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	peg	gi|57116681|ref|NC_000962.2|_4280788_4280033		1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	acyltransferase family protein			
-	4280792	4281571	780	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	peg	gi|57116681|ref|NC_000962.2|_4281571_4280792		1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	bacterial lipid A biosynthesis acyltransferase family protein			
+	4281647	4282402	756	aminoglycoside 3'-phosphotransferase	peg	gi|57116681|ref|NC_000962.2|_4281647_4282402		Aminoglycoside phosphotransferase	2.7.1.95	CDS	phosphotransferase enzyme family protein			
+	4282449	4283999	1551	Rieske (2Fe-2S) domain protein	peg	gi|57116681|ref|NC_000962.2|_4282449_4283999		Predicted Zn-dependent hydrolases of the beta-lactamase fold		CDS	putative Rieske 2Fe-2S iron-sulfur protein MSMEG_6410			
+	4283996	4284331	336	Putative uncharacterized protein BCG_3881	peg	gi|57116681|ref|NC_000962.2|_4283999_4284331		hypothetical protein		CDS	conserved hypothetical protein			
-	4284419	4285645	1227	Polyketide synthase associated protein papA2	peg	gi|57116681|ref|NC_000962.2|_4285645_4284419		Condensation domain.		CDS	trehalose-2-sulfate acyltransferase papA2	2.3.1.-	papA2	
+	4285889	4286686	798	hypothetical protein Rv3821	peg	gi|57116681|ref|NC_000962.2|_4285889_4286686		Protein of unknown function (DUF2910).		CDS	conserved hypothetical protein			
+	4286721	4287935	1215	PE family protein	peg	gi|57116681|ref|NC_000962.2|_4287174_4287935		PE-PPE domain.		CDS	PE-PPE domain protein			
-	4288260	4291529	3270	"membrane protein, MmpL family, putative"	peg	gi|57116681|ref|NC_000962.2|_4291397_4288260		Predicted drug exporters of the RND superfamily		CDS	membrane transport protein mmpL8		mmpL8	
-	4291639	4293174	1536	Polyketide synthase associated protein PapA1	peg	gi|57116681|ref|NC_000962.2|_4292925_4291639		Non-ribosomal peptide synthetase modules and related proteins		CDS	trehalose-2-sulfate acyltransferase papA2	2.3.1.-	papA2	
-	4293225	4299536	6312	Polyketide synthase	peg	gi|57116681|ref|NC_000962.2|_4299536_4293225		Polyketide synthase modules and related proteins		CDS	mycocerosic acid synthase	2.3.1.111	mas	
-	4301563	4302786	1224	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_4302786_4301563		Transposase and inactivated derivatives		CDS	putative transposase family protein			
+	4299812	4301566	1755	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|57116681|ref|NC_000962.2|_4299812_4301566		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	putative long-chain-fatty-acid--CoA ligase FadD23			
-	4302786	4303367	582	POSSIBLE RESOLVASE	peg	gi|57116681|ref|NC_000962.2|_4303367_4302786		Predicted site-specific integrase-resolvase		CDS	resolvase, N terminal domain protein			
-	4303398	4305008	1611	Beta-carotene ketolase (EC 1.14.-.-)	peg	gi|57116681|ref|NC_000962.2|_4305008_4303398		Phytoene dehydrogenase and related proteins		CDS	FAD binding domain protein			
-	4305056	4305685	630	Beta-carotene ketolase (EC 1.14.-.-)	peg	gi|57116681|ref|NC_000962.2|_4305685_4305056		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	4306236	4306754	519	FIG00820669: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4306754_4306236		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
+	4305757	4306239	483	FIG00821485: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4305757_4306239		Protein of unknown function (DUF2834).		CDS	conserved hypothetical protein			
-	4307655	4308914	1260	Seryl-tRNA synthetase (EC 6.1.1.11)	peg	gi|57116681|ref|NC_000962.2|_4308914_4307655		seryl-tRNA synthetase (EC 6.1.1.11)	6.1.1.11	CDS	serine--tRNA ligase	6.1.1.11	serS	
+	4306867	4307658	792	"Transcriptional regulator, AraC family"	peg	gi|57116681|ref|NC_000962.2|_4306867_4307658		transcriptional regulator, AraC family		CDS	cupin domain protein			
+	4309038	4310396	1359	PROBABLE CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4309038_4310396		Septum formation.		CDS	conserved hypothetical protein			
-	4310703	4310936	234				hypothetical protein		CDS				
+	4310401	4310814	414	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4310413_4310814		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	4311009	4311707	699	putative phosphoglycerate mutase	peg	gi|57116681|ref|NC_000962.2|_4311692_4311009		Fructose-2,6-bisphosphatase	5.4.2.1	CDS	histidine phosphatase super family protein			
-	4311704	4312675	972	Prephenate dehydratase (EC 4.2.1.51)	peg	gi|57116681|ref|NC_000962.2|_4312675_4311704		prephenate dehydratase (EC 4.2.1.51)	4.2.1.51	CDS	prephenate dehydratase family protein			
+	4312765	4313541	777	FIG00998479: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4312765_4313541		hypothetical protein		CDS	conserved hypothetical protein			
+	4313618	4313980	363	"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)"	peg	gi|57116681|ref|NC_000962.2|_4313618_4313980		transcriptional attenuator, LytR family		CDS	cell envelope-related function transcriptional attenuator common domain protein			
+	4314178	4314723	546	Ferritin	peg	gi|57116681|ref|NC_000962.2|_4314220_4314723		Ferritin-like protein		CDS	putative bacterioferritin BfrB			
-	4314738	4315568	831	Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	peg	gi|57116681|ref|NC_000962.2|_4315568_4314738		Glycerophosphoryl diester phosphodiesterase	3.1.4.46	CDS	glycerophosphoryl diester phosphodiesterase family protein			
-	4315568	4316515	948	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4316515_4315568		Domain of unknown function (DUF4328).		CDS	conserved hypothetical protein			
+	4316430	4316609	180	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4316430_4316609								
-	4316896	4317048	153							hypothetical protein			
-	4317685	4317885	201	FIG00822175: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4317885_4317685					conserved hypothetical protein			
+	4318775	4319266	492	Mobile element protein	peg	gi|57116681|ref|NC_000962.2|_4318775_4319266		Transposase.		CDS	transposase family protein			
+	4319281	4319640	360	FIG091491: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4319281_4319640		hypothetical protein		CDS	conserved hypothetical protein			
+	4319825	4320040	216	FIG00821489: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4319825_4320040					conserved hypothetical protein			
-	4320254	4320433	180	FIG00821329: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4320409_4320254		hypothetical protein		CDS	hypothetical protein			
+	4320704	4321327	624	Superoxide dismutase [Mn/Fe] (EC 1.15.1.1)	peg	gi|57116681|ref|NC_000962.2|_4320704_4321327		Superoxide dismutase	1.15.1.1	CDS	superoxide dismutase [Fe]	1.15.1.1	sodB	
+	4321538	4322071	534	FIG017534: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4321607_4322071		hypothetical protein		CDS	conserved hypothetical protein			
-	4322162	4322341	180	FIG00820641: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4322341_4322162					hypothetical protein			
+	4322326	4323234	909	FIG037441: Conserved transmembrane protein	peg	gi|57116681|ref|NC_000962.2|_4322326_4323234		Predicted membrane protein		CDS	conserved hypothetical protein			
+	4323499	4323897	399	ESX-1 secreted protein regulator EspR	peg	gi|57116681|ref|NC_000962.2|_4323499_4323897		hypothetical protein		CDS	ESX-1 secretion-associated regulator EspR		espR	
+	4324015	4324671	657	FIG022958: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4324015_4324671		hypothetical protein		CDS	conserved hypothetical protein			
+	4324683	4324967	285	POSSIBLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4324683_4324967		hypothetical protein		CDS	hypothetical protein			
+	4325074	4325478	405	POSSIBLE HISTONE-LIKE PROTEIN HNS	peg	gi|57116681|ref|NC_000962.2|_4325074_4325478		hypothetical protein		CDS	hypothetical protein			
+	4325495	4325968	474	Ribonuclease E inhibitor RraA	peg	gi|57116681|ref|NC_000962.2|_4325495_4325968		RraA famliy		CDS	putative regulator of ribonuclease activity			
-	4326004	4327473	1470	"monooxygenase, flavin-binding family"	peg	gi|57116681|ref|NC_000962.2|_4327473_4326004		Predicted flavoprotein involved in K+ transport	1.14.13.-	CDS	FAD-containing monooxygenase EthA	1.14.13.-	ethA	
+	4327549	4328199	651	"Transcriptional repressor EthR, TetR family"	peg	gi|57116681|ref|NC_000962.2|_4327549_4328199		transcriptional regulator, TetR family		CDS	HTH-type transcriptional regulator EthR		ethR	
-	4328401	4329408	1008	DNA-dependent DNA polymerase beta chain	peg	gi|57116681|ref|NC_000962.2|_4329408_4328401		Histidinol phosphatase and related hydrolases of the PHP family		CDS	PHP domain protein			
-	4329417	4329614	198	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4329614_4329417		hypothetical protein		CDS	membrane domain protein			
-	4329745	4329921	177	FIG00820244: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4329921_4329745		hypothetical protein		CDS	conserved hypothetical protein			
-	4330039	4331505	1467	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	peg	gi|57116681|ref|NC_000962.2|_4331505_4330039		glutamate synthase (NADH) small subunit (EC 1.4.1.14)	1.4.1.13, 1.4.1.14	CDS	glutamate synthase, NADH/NADPH, small subunit domain protein	1.4.1.-	gltD	
-	4331498	4336081	4584	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	peg	gi|57116681|ref|NC_000962.2|_4336081_4331498		Glutamate synthase domain 2	1.4.1.13, 1.4.1.14	CDS	GXGXG motif family protein			
+	4337074	4337949	876	"Antiactivator of flagellar biosynthesis FleN, an ATPase"	peg	gi|57116681|ref|NC_000962.2|_4337077_4337949		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
-	4338171	4338461	291				Transcription factor WhiB.		CDS				
+	4337946	4338272	327	FIG00820791: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4337946_4338272					transcription factor WhiB domain protein			
+	4338915	4340027	1113	Probable forkhead-associated protein	peg	gi|57116681|ref|NC_000962.2|_4338981_4340027		hypothetical protein		CDS	conserved hypothetical protein			
+	4340270	4341478	1209	FIG034615: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4340270_4341478		hypothetical protein		CDS	putative eSX-1 secretion-associated protein EspE			
+	4341566	4341877	312	conserved hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4341566_4341877		Protein of unknown function (DUF2580).		CDS	ESX-1 secretion-associated protein EspF		espF	
+	4341874	4342731	858	RD1 region associated protein Rv3866	peg	gi|57116681|ref|NC_000962.2|_4341874_4342731		EspG family.		CDS	ESX-1 secretion-associated protein EspG1		espG1	
+	4342770	4343321	552	RD1 region associated protein Rv3867	peg	gi|57116681|ref|NC_000962.2|_4342770_4343321		hypothetical protein		CDS	ESX-1 secretion-associated protein EspD		espD	
+	4343314	4345035	1722	"AAA family ATPase, ESX-1 secretion system component Rv3868"	peg	gi|57116681|ref|NC_000962.2|_4343326_4345035		type VII secretion AAA-ATPase EccA		CDS	type VII secretion AAA-ATPase EccA		eccA	
+	4345039	4346481	1443	Putative ESX-1 secretion system component Rv3869	peg	gi|57116681|ref|NC_000962.2|_4345039_4346481		type VII secretion protein EccB, Actinobacterial		CDS	type VII secretion protein EccB		eccB	
+	4346481	4348724	2244	"FtsK/SpoIIIE family protein Rv3870, component of ESX-1 secretion system"	peg	gi|57116681|ref|NC_000962.2|_4346481_4348724		type VII secretion protein EccCa		CDS	ESX-1 secretion system protein eccCa1		eccCa1	
+	4348827	4350602	1776	"FtsK/SpoIIIE family protein Rv3871, component of ESX-1 secretion system"	peg	gi|57116681|ref|NC_000962.2|_4348827_4350602		type VII secretion protein EccCb		CDS	ESX-1 secretion system protein EccCb1		eccCb1	
+	4350745	4351044	300	PE family protein	peg	gi|57116681|ref|NC_000962.2|_4350745_4351044		PE family.		CDS	conserved hypothetical protein			
+	4351066	4352181	1116	Putative ESX-1 secretion system gating protein PPE68	peg	gi|57116681|ref|NC_000962.2|_4351066_4352181		PPE-repeat proteins		CDS	PPE family protein			
+	4352274	4352576	303	10 kDa culture filtrate antigen CFP-10 (EsxB)	peg	gi|57116681|ref|NC_000962.2|_4352274_4352576		WXG100 family type VII secretion target		CDS	ESAT-6-like protein esxB		esxB	
+	4352609	4352896	288	6 kDa early secretory antigenic target ESAT-6 (EsxA)	peg	gi|57116681|ref|NC_000962.2|_4352609_4352896		WXG100 family type VII secretion target		CDS	6 kDa early secretory antigenic target		esxA	
-	4353021	4353422	402				hypothetical protein		CDS				
+	4353010	4355010	2001	RD1 region associated protein Rv3876	peg	gi|57116681|ref|NC_000962.2|_4353010_4355010		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
+	4355079	4356542	1464	Putative ESX-1 secretion system component Rv3877	peg	gi|57116681|ref|NC_000962.2|_4355079_4356542		type VII secretion integral membrane protein EccD		CDS	type VII secretion integral membrane protein EccD		eccD	
+	4356693	4357535	843	RD1 region associated protein Rv3878	peg	gi|57116681|ref|NC_000962.2|_4356693_4357535		hypothetical protein		CDS	putative eSX-1 secretion-associated protein EspJ			
-	4357593	4359782	2190	RD1 region associated protein Rv3879c	peg	gi|57116681|ref|NC_000962.2|_4358414_4357593		hypothetical protein		CDS	ESX-1 secretion-associated EspK domain protein		espK	
+	4358460	4359365	906	LigA	peg	gi|57116681|ref|NC_000962.2|_4358460_4359365					conserved hypothetical protein			
+	4359618	4359905	288	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4359618_4359905					putative predicted protein			
-	4360199	4360546	348	FIG00821130: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4360540_4360199		YbaB/EbfC DNA-binding family.		CDS	ybaB/EbfC DNA-binding family protein			
-	4360543	4361925	1383	FIG028708: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4361925_4360543		hypothetical protein		CDS	ESX-1 secretion-associated protein EspB		espB	
-	4362032	4363420	1389	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_4363420_4362032		type VII secretion protein EccE		CDS	ESX-1 secretion system protein EccE1		eccE1	
-	4363417	4364787	1371	serine protease	peg	gi|57116681|ref|NC_000962.2|_4364787_4363417		type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	
-	4364979	4366829	1851	Type VII secretion system protein EccA2	peg	gi|57116681|ref|NC_000962.2|_4366817_4364979		type VII secretion AAA-ATPase EccA		CDS	type VII secretion AAA-ATPase EccA		eccA	
-	4366908	4368521	1614	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|57116681|ref|NC_000962.2|_4368521_4366908		type VII secretion protein EccE		CDS	type VII secretion protein EccE		eccE	
-	4368518	4370170	1653	Type VII secretion-associated serine protease mycosin	peg	gi|57116681|ref|NC_000962.2|_4369954_4368518		type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	
-	4370155	4371684	1530	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4371561_4370155		type VII secretion integral membrane protein EccD		CDS	type VII secretion integral membrane protein EccD		eccD	
-	4371681	4372679	999	ATP/GTP binding protein	peg	gi|57116681|ref|NC_000962.2|_4372679_4371681		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
-	4372800	4373630	831	FIG00820325: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4373630_4372800		EspG family.		CDS	espG family protein			
-	4373726	4374013	288	Esat-6 like protein EsxC	peg	gi|57116681|ref|NC_000962.2|_4373932_4373726		Uncharacterized protein conserved in bacteria		CDS	s of 100 residues with WXG family protein			
-	4374049	4374372	324	Esat-6 like protein EsxD	peg	gi|57116681|ref|NC_000962.2|_4374372_4374049		Proteins of 100 residues with WXG.		CDS	s of 100 residues with WXG family protein			
-	4374484	4375683	1200	PPE family protein	peg	gi|57116681|ref|NC_000962.2|_4375683_4374484		PPE family.		CDS	PPE family protein			
-	4375762	4375995	234	PE family protein	peg	gi|57116681|ref|NC_000962.2|_4375968_4375762		PE family.		CDS	PE family protein			
-	4376074	4376238	165	FIG00824716: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4376238_4376074					hypothetical protein			
-	4376262	4380452	4191	FtsK/SpoIIIE family protein	peg	gi|57116681|ref|NC_000962.2|_4380452_4376262		DNA segregation ATPase FtsK/SpoIIIE and related proteins		CDS	type VII secretion protein EccCb		eccCb	
-	4380453	4381940	1488	PROBABLE CONSERVED MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4381940_4380453		type VII secretion protein EccB, Actinobacterial		CDS	type VII secretion protein EccB		eccB	
-	4381943	4382851	909	Putative secreted protein	peg	gi|57116681|ref|NC_000962.2|_4382812_4381943		SLT domain proteins		CDS	transglycosylase SLT domain protein			
-	4383008	4383640	633	FIG00820584: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4383640_4383008		hypothetical protein		CDS	conserved hypothetical protein			
-	4383653	4383991	339	FIG00820584: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4383991_4383653		hypothetical protein		CDS	conserved hypothetical protein			
-	4384147	4384863	717	Vegetative cell wall protein gp1 precursor	peg	gi|57116681|ref|NC_000962.2|_4384863_4384147		hypothetical protein		CDS	conserved hypothetical protein			
-	4385373	4386305	933	Vegetative cell wall protein gp1 precursor	peg	gi|57116681|ref|NC_000962.2|_4386305_4385373		hypothetical protein		CDS	putative conserved alanine rich protein			
+	4385189	4385485	297				hypothetical protein		CDS				
-	4386365	4386718	354	POSSIBLE MEMBRANE PROTEIN	peg	gi|57116681|ref|NC_000962.2|_4386718_4386365		hypothetical protein		CDS	putative membrane protein			
+	4386757	4386987	231	FIG00822578: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4386757_4386987		hypothetical protein		CDS	conserved hypothetical protein			
-	4387365	4387895	531	FIG00820525: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4387883_4387365		hypothetical protein		CDS	conserved hypothetical protein			
-	4387892	4390432	2541	FIG00832379: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4390432_4387892		Protein of unknown function (DUF4237).		CDS	conserved hypothetical protein			
-	4390437	4390727	291	Esat-6 like protein EsxE	peg	gi|57116681|ref|NC_000962.2|_4390727_4390437		Uncharacterized protein conserved in bacteria		CDS	s of 100 residues with WXG family protein			
-	4390720	4391031	312	Esat-6 like protein EsxF	peg	gi|57116681|ref|NC_000962.2|_4391031_4390720		Uncharacterized protein conserved in bacteria		CDS	WXG100 type VII secretion target family protein			
-	4391097	4391606	510	FIG00820046: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4391606_4391097		hypothetical protein		CDS	conserved hypothetical protein			
-	4391631	4393073	1443	tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	peg	gi|57116681|ref|NC_000962.2|_4393073_4391631		tRNA adenylyltransferase	2.7.7.19	CDS	CCA tRNA nucleotidyltransferase	2.7.7.72		
+	4393533	4394195	663	MutT/nudix family protein	peg	gi|57116681|ref|NC_000962.2|_4393623_4394195		ADP-ribose pyrophosphatase		CDS	NUDIX domain protein			
+	4394192	4396600	2409	hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4394192_4396600		hypothetical protein		CDS	conserved hypothetical protein			
+	4396597	4400151	3555	Proposed peptidoglycan lipid II flippase MurJ	peg	gi|57116681|ref|NC_000962.2|_4396618_4400151		integral membrane protein MviN		CDS	integral membrane protein MviN		mviN	
+	4400186	4400854	669	"RNA polymerase sigma-70 factor, ECF subfamily"	peg	gi|57116681|ref|NC_000962.2|_4400186_4400854		DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog		CDS	RNA polymerase sigma factor, sigma-70 family protein			
+	4400870	4401634	765	FIG00999975: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4400870_4401634		hypothetical protein		CDS	conserved hypothetical protein			
+	4401728	4402735	1008	Thioredoxin reductase (EC 1.8.1.9)	peg	gi|57116681|ref|NC_000962.2|_4401728_4402735		thioredoxin-disulfide reductase	1.8.1.9	CDS	thioredoxin-disulfide reductase	1.8.1.9	trxB	
+	4402732	4403082	351	Thioredoxin reductase (EC 1.8.1.9)	peg	gi|57116681|ref|NC_000962.2|_4402732_4403082		thioredoxin		CDS	thioredoxin		trxA	
+	4403192	4404412	1221	N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	peg	gi|57116681|ref|NC_000962.2|_4403192_4404412		N-acetylmuramoyl-L-alanine amidase		CDS	putative peptidoglycan binding domain protein			
-	4404433	4405167	735	FIG007808: hypothetical protein	peg	gi|57116681|ref|NC_000962.2|_4405167_4404433		hypothetical protein		CDS	putative acetyltransferase			
-	4405457	4406491	1035	Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J	peg	gi|57116681|ref|NC_000962.2|_4406329_4405457		chromosome segregation DNA-binding protein		CDS	parB/RepB/Spo0J family partition domain protein			
-	4406488	4407531	1044	Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj	peg	gi|57116681|ref|NC_000962.2|_4407441_4406488		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
-	4407528	4408202	675	Ribosomal RNA small subunit methyltransferase G	peg	gi|57116681|ref|NC_000962.2|_4408202_4407528		16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170)	2.1.1.170	CDS	16S rRNA (guanine(527)-N(7))-methyltransferase GidB	2.1.1.170	gidB	
-	4408334	4408897	564	RNA-binding protein Jag	peg	gi|57116681|ref|NC_000962.2|_4408897_4408334		Predicted RNA-binding protein		CDS	KH domain protein			
-	4408969	4410069	1101	"Inner membrane protein translocase component YidC, long form"	peg	gi|57116681|ref|NC_000962.2|_4410069_4408969		Preprotein translocase subunit YidC		CDS	membrane insertase, YidC/Oxa1 family domain protein		yidC	
-	4410412	4410600	189	Ribonuclease P protein component (EC 3.1.26.5)	peg	gi|57116681|ref|NC_000962.2|_4410600_4410412					ribonuclease P family protein			
